Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02698 and CCNA_02699 are separated by 114 nucleotides CCNA_02699 and CCNA_02700 overlap by 14 nucleotides
CCNA_02698: CCNA_02698 - Inosine-uridine nucleoside N-ribohydrolase, at 2,851,489 to 2,852,460
_02698
CCNA_02699: CCNA_02699 - guanine deaminase, at 2,852,575 to 2,853,861
_02699
CCNA_02700: CCNA_02700 - xanthine dehydrogenase accessory protein XdhC, at 2,853,848 to 2,854,864
_02700
Position (kb)
2852
2853
2854 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2851.578 kb on + strand at 2851.600 kb on + strand, within CCNA_02698 at 2851.644 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.719 kb on + strand, within CCNA_02698 at 2851.738 kb on - strand, within CCNA_02698 at 2851.758 kb on - strand, within CCNA_02698 at 2851.758 kb on - strand, within CCNA_02698 at 2851.760 kb on + strand, within CCNA_02698 at 2851.763 kb on - strand, within CCNA_02698 at 2851.774 kb on + strand, within CCNA_02698 at 2851.823 kb on - strand, within CCNA_02698 at 2851.845 kb on + strand, within CCNA_02698 at 2851.850 kb on + strand, within CCNA_02698 at 2851.857 kb on + strand, within CCNA_02698 at 2851.868 kb on - strand, within CCNA_02698 at 2851.873 kb on + strand, within CCNA_02698 at 2851.873 kb on + strand, within CCNA_02698 at 2851.877 kb on + strand, within CCNA_02698 at 2851.881 kb on - strand, within CCNA_02698 at 2851.896 kb on - strand, within CCNA_02698 at 2851.904 kb on - strand, within CCNA_02698 at 2851.926 kb on + strand, within CCNA_02698 at 2851.926 kb on + strand, within CCNA_02698 at 2851.934 kb on - strand, within CCNA_02698 at 2851.934 kb on - strand, within CCNA_02698 at 2851.983 kb on + strand, within CCNA_02698 at 2851.985 kb on - strand, within CCNA_02698 at 2852.016 kb on - strand, within CCNA_02698 at 2852.027 kb on + strand, within CCNA_02698 at 2852.037 kb on + strand, within CCNA_02698 at 2852.037 kb on + strand, within CCNA_02698 at 2852.037 kb on + strand, within CCNA_02698 at 2852.045 kb on - strand, within CCNA_02698 at 2852.051 kb on + strand, within CCNA_02698 at 2852.059 kb on - strand, within CCNA_02698 at 2852.072 kb on + strand, within CCNA_02698 at 2852.166 kb on + strand, within CCNA_02698 at 2852.166 kb on + strand, within CCNA_02698 at 2852.192 kb on - strand, within CCNA_02698 at 2852.211 kb on + strand, within CCNA_02698 at 2852.320 kb on - strand, within CCNA_02698 at 2852.324 kb on - strand, within CCNA_02698 at 2852.342 kb on - strand, within CCNA_02698 at 2852.342 kb on - strand, within CCNA_02698 at 2852.439 kb on - strand at 2852.500 kb on + strand at 2852.500 kb on + strand at 2852.500 kb on + strand at 2852.505 kb on + strand at 2852.511 kb on + strand at 2852.549 kb on - strand at 2853.055 kb on - strand, within CCNA_02699 at 2853.119 kb on - strand, within CCNA_02699 at 2853.121 kb on + strand, within CCNA_02699 at 2853.853 kb on + strand at 2853.889 kb on - strand at 2853.980 kb on + strand, within CCNA_02700 at 2853.980 kb on + strand, within CCNA_02700 at 2853.980 kb on + strand, within CCNA_02700 at 2853.980 kb on + strand, within CCNA_02700 at 2853.980 kb on + strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2854.052 kb on - strand, within CCNA_02700 at 2854.108 kb on + strand, within CCNA_02700 at 2854.114 kb on - strand, within CCNA_02700 at 2854.114 kb on - strand, within CCNA_02700 at 2854.136 kb on + strand, within CCNA_02700 at 2854.137 kb on + strand, within CCNA_02700 at 2854.141 kb on + strand, within CCNA_02700 at 2854.144 kb on - strand, within CCNA_02700 at 2854.144 kb on - strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.149 kb on + strand, within CCNA_02700 at 2854.155 kb on - strand, within CCNA_02700 at 2854.155 kb on - strand, within CCNA_02700 at 2854.177 kb on - strand, within CCNA_02700 at 2854.293 kb on + strand, within CCNA_02700 at 2854.368 kb on - strand, within CCNA_02700 at 2854.420 kb on + strand, within CCNA_02700 at 2854.466 kb on + strand, within CCNA_02700 at 2854.474 kb on + strand, within CCNA_02700 at 2854.575 kb on + strand, within CCNA_02700 at 2854.596 kb on + strand, within CCNA_02700 at 2854.807 kb on - strand at 2854.807 kb on - strand at 2854.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 2,851,578 + +0.5 2,851,600 + CCNA_02698 0.11 -0.1 2,851,644 + CCNA_02698 0.16 +0.8 2,851,678 + CCNA_02698 0.19 +0.5 2,851,678 + CCNA_02698 0.19 +1.8 2,851,678 + CCNA_02698 0.19 +0.2 2,851,719 + CCNA_02698 0.24 -0.0 2,851,738 - CCNA_02698 0.26 -0.6 2,851,758 - CCNA_02698 0.28 +0.2 2,851,758 - CCNA_02698 0.28 -2.1 2,851,760 + CCNA_02698 0.28 +1.4 2,851,763 - CCNA_02698 0.28 -0.1 2,851,774 + CCNA_02698 0.29 +0.1 2,851,823 - CCNA_02698 0.34 -1.6 2,851,845 + CCNA_02698 0.37 +0.2 2,851,850 + CCNA_02698 0.37 +0.5 2,851,857 + CCNA_02698 0.38 +0.3 2,851,868 - CCNA_02698 0.39 +1.3 2,851,873 + CCNA_02698 0.40 -0.1 2,851,873 + CCNA_02698 0.40 +0.4 2,851,877 + CCNA_02698 0.40 -1.1 2,851,881 - CCNA_02698 0.40 -0.3 2,851,896 - CCNA_02698 0.42 +0.2 2,851,904 - CCNA_02698 0.43 -0.0 2,851,926 + CCNA_02698 0.45 +1.0 2,851,926 + CCNA_02698 0.45 +0.3 2,851,934 - CCNA_02698 0.46 +0.3 2,851,934 - CCNA_02698 0.46 -0.0 2,851,983 + CCNA_02698 0.51 -0.2 2,851,985 - CCNA_02698 0.51 +0.2 2,852,016 - CCNA_02698 0.54 -0.6 2,852,027 + CCNA_02698 0.55 +0.6 2,852,037 + CCNA_02698 0.56 +0.3 2,852,037 + CCNA_02698 0.56 +0.4 2,852,037 + CCNA_02698 0.56 +0.6 2,852,045 - CCNA_02698 0.57 +0.5 2,852,051 + CCNA_02698 0.58 +1.0 2,852,059 - CCNA_02698 0.59 +0.3 2,852,072 + CCNA_02698 0.60 -0.4 2,852,166 + CCNA_02698 0.70 +0.4 2,852,166 + CCNA_02698 0.70 +0.9 2,852,192 - CCNA_02698 0.72 -1.7 2,852,211 + CCNA_02698 0.74 -0.1 2,852,320 - CCNA_02698 0.85 -0.1 2,852,324 - CCNA_02698 0.86 -1.1 2,852,342 - CCNA_02698 0.88 -0.7 2,852,342 - CCNA_02698 0.88 +1.6 2,852,439 - -0.2 2,852,500 + -0.4 2,852,500 + +1.0 2,852,500 + +0.0 2,852,505 + +0.3 2,852,511 + +0.7 2,852,549 - +0.2 2,853,055 - CCNA_02699 0.37 +1.2 2,853,119 - CCNA_02699 0.42 +0.8 2,853,121 + CCNA_02699 0.42 +0.5 2,853,853 + -0.4 2,853,889 - -0.0 2,853,980 + CCNA_02700 0.13 -0.5 2,853,980 + CCNA_02700 0.13 -0.4 2,853,980 + CCNA_02700 0.13 +0.5 2,853,980 + CCNA_02700 0.13 -0.0 2,853,980 + CCNA_02700 0.13 +1.1 2,853,988 - CCNA_02700 0.14 +0.8 2,853,988 - CCNA_02700 0.14 +0.3 2,853,988 - CCNA_02700 0.14 -0.1 2,853,988 - CCNA_02700 0.14 +0.6 2,854,052 - CCNA_02700 0.20 -0.6 2,854,108 + CCNA_02700 0.26 +2.0 2,854,114 - CCNA_02700 0.26 +0.3 2,854,114 - CCNA_02700 0.26 +1.8 2,854,136 + CCNA_02700 0.28 -0.4 2,854,137 + CCNA_02700 0.28 +0.0 2,854,141 + CCNA_02700 0.29 +0.3 2,854,144 - CCNA_02700 0.29 -0.7 2,854,144 - CCNA_02700 0.29 +0.5 2,854,147 + CCNA_02700 0.29 +1.4 2,854,147 + CCNA_02700 0.29 +0.0 2,854,147 + CCNA_02700 0.29 +0.2 2,854,147 + CCNA_02700 0.29 -2.1 2,854,149 + CCNA_02700 0.30 +0.7 2,854,155 - CCNA_02700 0.30 +0.1 2,854,155 - CCNA_02700 0.30 -0.0 2,854,177 - CCNA_02700 0.32 -0.1 2,854,293 + CCNA_02700 0.44 +0.1 2,854,368 - CCNA_02700 0.51 +0.0 2,854,420 + CCNA_02700 0.56 +0.7 2,854,466 + CCNA_02700 0.61 -1.9 2,854,474 + CCNA_02700 0.62 +0.7 2,854,575 + CCNA_02700 0.71 -1.1 2,854,596 + CCNA_02700 0.74 -1.8 2,854,807 - +0.1 2,854,807 - +0.4 2,854,832 + -0.8
Or see this region's nucleotide sequence