Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02387

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02386 and CCNA_02387 overlap by 4 nucleotidesCCNA_02387 and CCNA_02388 are separated by 42 nucleotidesCCNA_02388 and CCNA_02389 overlap by 4 nucleotides CCNA_02386: CCNA_02386 - O-antigen ligase related enzyme, at 2,529,502 to 2,530,725 _02386 CCNA_02387: CCNA_02387 - glutathione reductase, at 2,530,722 to 2,532,122 _02387 CCNA_02388: CCNA_02388 - ribose 5-phosphate isomerase, at 2,532,165 to 2,532,848 _02388 CCNA_02389: CCNA_02389 - glucosamine-1-phosphate acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase, at 2,532,845 to 2,534,233 _02389 Position (kb) 2530 2531 2532 2533Strain fitness (log2 ratio) -2 -1 0 1 2at 2529.743 kb on + strand, within CCNA_02386at 2529.769 kb on - strand, within CCNA_02386at 2529.770 kb on + strand, within CCNA_02386at 2529.828 kb on - strand, within CCNA_02386at 2529.899 kb on + strand, within CCNA_02386at 2529.935 kb on + strand, within CCNA_02386at 2529.959 kb on + strand, within CCNA_02386at 2530.084 kb on - strand, within CCNA_02386at 2530.086 kb on - strand, within CCNA_02386at 2530.180 kb on - strand, within CCNA_02386at 2530.212 kb on + strand, within CCNA_02386at 2530.227 kb on + strand, within CCNA_02386at 2530.266 kb on - strand, within CCNA_02386at 2530.335 kb on + strand, within CCNA_02386at 2530.343 kb on - strand, within CCNA_02386at 2530.343 kb on - strand, within CCNA_02386at 2530.343 kb on - strand, within CCNA_02386at 2530.343 kb on - strand, within CCNA_02386at 2530.343 kb on - strand, within CCNA_02386at 2530.405 kb on - strand, within CCNA_02386at 2530.433 kb on - strand, within CCNA_02386at 2530.434 kb on - strand, within CCNA_02386at 2530.603 kb on + strandat 2530.611 kb on - strandat 2530.679 kb on - strandat 2530.724 kb on + strandat 2530.981 kb on + strand, within CCNA_02387at 2531.710 kb on + strand, within CCNA_02387at 2531.718 kb on - strand, within CCNA_02387at 2532.150 kb on + strandat 2532.158 kb on - strandat 2532.163 kb on + strandat 2532.163 kb on + strandat 2532.171 kb on - strandat 2532.180 kb on + strandat 2532.194 kb on - strandat 2532.195 kb on - strandat 2532.403 kb on - strand, within CCNA_02388

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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2,529,743 + CCNA_02386 0.20 -2.4
2,529,769 - CCNA_02386 0.22 +0.1
2,529,770 + CCNA_02386 0.22 -0.4
2,529,828 - CCNA_02386 0.27 -1.5
2,529,899 + CCNA_02386 0.32 -0.2
2,529,935 + CCNA_02386 0.35 +0.5
2,529,959 + CCNA_02386 0.37 +0.5
2,530,084 - CCNA_02386 0.48 +1.1
2,530,086 - CCNA_02386 0.48 -0.1
2,530,180 - CCNA_02386 0.55 -1.5
2,530,212 + CCNA_02386 0.58 -0.3
2,530,227 + CCNA_02386 0.59 +0.5
2,530,266 - CCNA_02386 0.62 -0.7
2,530,335 + CCNA_02386 0.68 -0.3
2,530,343 - CCNA_02386 0.69 -2.4
2,530,343 - CCNA_02386 0.69 +0.2
2,530,343 - CCNA_02386 0.69 +0.0
2,530,343 - CCNA_02386 0.69 +0.2
2,530,343 - CCNA_02386 0.69 -0.1
2,530,405 - CCNA_02386 0.74 -0.4
2,530,433 - CCNA_02386 0.76 +1.8
2,530,434 - CCNA_02386 0.76 -0.1
2,530,603 + -2.5
2,530,611 - +0.6
2,530,679 - -0.1
2,530,724 + +0.1
2,530,981 + CCNA_02387 0.18 +0.5
2,531,710 + CCNA_02387 0.71 +0.2
2,531,718 - CCNA_02387 0.71 -1.1
2,532,150 + +1.2
2,532,158 - +0.3
2,532,163 + -1.0
2,532,163 + +1.1
2,532,171 - -0.1
2,532,180 + -0.7
2,532,194 - +0.2
2,532,195 - +1.2
2,532,403 - CCNA_02388 0.35 +1.4

Or see this region's nucleotide sequence