Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01972 and CCNA_01973 are separated by 22 nucleotides CCNA_01973 and CCNA_01974 are separated by 115 nucleotides CCNA_01974 and CCNA_01975 are separated by 8 nucleotides
CCNA_01972: CCNA_01972 - anthranilate synthase component I, at 2,117,381 to 2,118,922
_01972
CCNA_01973: CCNA_01973 - hypothetical protein, at 2,118,945 to 2,119,154
_01973
CCNA_01974: CCNA_01974 - anthranilate synthase component II/para-aminobenzoate synthase glutamine amidotransferase component II, at 2,119,270 to 2,119,866
_01974
CCNA_01975: CCNA_01975 - anthranilate phosphoribosyltransferase, at 2,119,875 to 2,120,900
_01975
Position (kb)
2118
2119
2120 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2117.976 kb on - strand, within CCNA_01972 at 2117.987 kb on + strand, within CCNA_01972 at 2117.987 kb on + strand, within CCNA_01972 at 2118.006 kb on + strand, within CCNA_01972 at 2118.098 kb on + strand, within CCNA_01972 at 2118.105 kb on - strand, within CCNA_01972 at 2118.120 kb on + strand, within CCNA_01972 at 2118.155 kb on + strand, within CCNA_01972 at 2118.155 kb on + strand, within CCNA_01972 at 2118.163 kb on - strand, within CCNA_01972 at 2118.189 kb on - strand, within CCNA_01972 at 2118.240 kb on + strand, within CCNA_01972 at 2118.248 kb on - strand, within CCNA_01972 at 2118.255 kb on + strand, within CCNA_01972 at 2118.389 kb on - strand, within CCNA_01972 at 2118.416 kb on + strand, within CCNA_01972 at 2118.501 kb on + strand, within CCNA_01972 at 2118.518 kb on + strand, within CCNA_01972 at 2118.534 kb on - strand, within CCNA_01972 at 2118.651 kb on + strand, within CCNA_01972 at 2118.685 kb on + strand, within CCNA_01972 at 2118.722 kb on - strand, within CCNA_01972 at 2118.752 kb on + strand, within CCNA_01972 at 2118.757 kb on + strand, within CCNA_01972 at 2118.767 kb on + strand, within CCNA_01972 at 2118.769 kb on + strand at 2118.770 kb on - strand at 2118.784 kb on + strand at 2118.811 kb on + strand at 2118.856 kb on + strand at 2118.866 kb on + strand at 2118.902 kb on - strand at 2118.904 kb on + strand at 2118.983 kb on - strand, within CCNA_01973 at 2118.984 kb on - strand, within CCNA_01973 at 2119.002 kb on + strand, within CCNA_01973 at 2119.020 kb on + strand, within CCNA_01973 at 2119.093 kb on - strand, within CCNA_01973 at 2119.093 kb on - strand, within CCNA_01973 at 2119.093 kb on - strand, within CCNA_01973 at 2119.107 kb on + strand, within CCNA_01973 at 2119.128 kb on + strand, within CCNA_01973 at 2119.128 kb on + strand, within CCNA_01973 at 2119.172 kb on - strand at 2119.183 kb on + strand at 2119.248 kb on - strand at 2119.288 kb on + strand at 2119.296 kb on - strand at 2119.296 kb on - strand at 2119.366 kb on + strand, within CCNA_01974 at 2119.432 kb on - strand, within CCNA_01974 at 2119.432 kb on - strand, within CCNA_01974 at 2119.464 kb on + strand, within CCNA_01974 at 2119.464 kb on + strand, within CCNA_01974 at 2119.470 kb on - strand, within CCNA_01974 at 2119.472 kb on - strand, within CCNA_01974 at 2119.505 kb on + strand, within CCNA_01974 at 2119.526 kb on + strand, within CCNA_01974 at 2119.530 kb on + strand, within CCNA_01974 at 2119.572 kb on - strand, within CCNA_01974 at 2119.611 kb on + strand, within CCNA_01974 at 2119.618 kb on + strand, within CCNA_01974 at 2119.619 kb on - strand, within CCNA_01974 at 2119.632 kb on + strand, within CCNA_01974 at 2119.661 kb on - strand, within CCNA_01974 at 2119.678 kb on - strand, within CCNA_01974 at 2119.688 kb on + strand, within CCNA_01974 at 2119.696 kb on - strand, within CCNA_01974 at 2119.722 kb on + strand, within CCNA_01974 at 2119.737 kb on + strand, within CCNA_01974 at 2119.767 kb on + strand, within CCNA_01974 at 2119.825 kb on + strand at 2119.868 kb on - strand at 2119.868 kb on - strand at 2119.886 kb on + strand at 2119.917 kb on + strand at 2119.925 kb on - strand at 2120.093 kb on + strand, within CCNA_01975 at 2120.095 kb on + strand, within CCNA_01975 at 2120.141 kb on - strand, within CCNA_01975
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 2,117,976 - CCNA_01972 0.39 +0.0 2,117,987 + CCNA_01972 0.39 +0.6 2,117,987 + CCNA_01972 0.39 +0.4 2,118,006 + CCNA_01972 0.41 +0.5 2,118,098 + CCNA_01972 0.46 +0.1 2,118,105 - CCNA_01972 0.47 -3.3 2,118,120 + CCNA_01972 0.48 +0.5 2,118,155 + CCNA_01972 0.50 +0.9 2,118,155 + CCNA_01972 0.50 +0.2 2,118,163 - CCNA_01972 0.51 -0.4 2,118,189 - CCNA_01972 0.52 -0.6 2,118,240 + CCNA_01972 0.56 +0.9 2,118,248 - CCNA_01972 0.56 -1.6 2,118,255 + CCNA_01972 0.57 +0.2 2,118,389 - CCNA_01972 0.65 -0.2 2,118,416 + CCNA_01972 0.67 +0.2 2,118,501 + CCNA_01972 0.73 +0.4 2,118,518 + CCNA_01972 0.74 +0.3 2,118,534 - CCNA_01972 0.75 -1.6 2,118,651 + CCNA_01972 0.82 +0.2 2,118,685 + CCNA_01972 0.85 -0.6 2,118,722 - CCNA_01972 0.87 +0.2 2,118,752 + CCNA_01972 0.89 +0.6 2,118,757 + CCNA_01972 0.89 +1.5 2,118,767 + CCNA_01972 0.90 +0.8 2,118,769 + +1.0 2,118,770 - -0.2 2,118,784 + +0.7 2,118,811 + +0.4 2,118,856 + +0.5 2,118,866 + +0.8 2,118,902 - +0.5 2,118,904 + +1.1 2,118,983 - CCNA_01973 0.18 +0.5 2,118,984 - CCNA_01973 0.19 -0.0 2,119,002 + CCNA_01973 0.27 +0.5 2,119,020 + CCNA_01973 0.36 -0.3 2,119,093 - CCNA_01973 0.70 +0.3 2,119,093 - CCNA_01973 0.70 +0.0 2,119,093 - CCNA_01973 0.70 +0.2 2,119,107 + CCNA_01973 0.77 -0.2 2,119,128 + CCNA_01973 0.87 +0.0 2,119,128 + CCNA_01973 0.87 +0.5 2,119,172 - +0.8 2,119,183 + +0.3 2,119,248 - -1.7 2,119,288 + +1.2 2,119,296 - +0.1 2,119,296 - +0.1 2,119,366 + CCNA_01974 0.16 -0.1 2,119,432 - CCNA_01974 0.27 -0.4 2,119,432 - CCNA_01974 0.27 -0.7 2,119,464 + CCNA_01974 0.32 +0.3 2,119,464 + CCNA_01974 0.32 +0.2 2,119,470 - CCNA_01974 0.34 +0.4 2,119,472 - CCNA_01974 0.34 -0.6 2,119,505 + CCNA_01974 0.39 +0.6 2,119,526 + CCNA_01974 0.43 -0.2 2,119,530 + CCNA_01974 0.44 -0.7 2,119,572 - CCNA_01974 0.51 +1.2 2,119,611 + CCNA_01974 0.57 -0.8 2,119,618 + CCNA_01974 0.58 -0.2 2,119,619 - CCNA_01974 0.58 -1.0 2,119,632 + CCNA_01974 0.61 +1.1 2,119,661 - CCNA_01974 0.65 -2.4 2,119,678 - CCNA_01974 0.68 -1.9 2,119,688 + CCNA_01974 0.70 +0.1 2,119,696 - CCNA_01974 0.71 -0.9 2,119,722 + CCNA_01974 0.76 +0.2 2,119,737 + CCNA_01974 0.78 -0.0 2,119,767 + CCNA_01974 0.83 -0.9 2,119,825 + +0.7 2,119,868 - -0.9 2,119,868 - +2.3 2,119,886 + +0.5 2,119,917 + +0.2 2,119,925 - -0.4 2,120,093 + CCNA_01975 0.21 +0.5 2,120,095 + CCNA_01975 0.21 +0.2 2,120,141 - CCNA_01975 0.26 -0.1
Or see this region's nucleotide sequence