Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01949

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01948 and CCNA_01949 overlap by 20 nucleotidesCCNA_01949 and CCNA_01950 are separated by 77 nucleotides CCNA_01948: CCNA_01948 - peptidoglycan-specific endopeptidase, M23 family, at 2,090,363 to 2,091,514 _01948 CCNA_01949: CCNA_01949 - bactofilin A BacA, at 2,091,495 to 2,091,980 _01949 CCNA_01950: CCNA_01950 - peptide chain Release factor 2 (RF-2), at 2,092,058 to 2,093,173 _01950 Position (kb) 2091 2092Strain fitness (log2 ratio) -1 0 1 2at 2090.526 kb on - strand, within CCNA_01948at 2090.548 kb on + strand, within CCNA_01948at 2090.614 kb on + strand, within CCNA_01948at 2090.614 kb on + strand, within CCNA_01948at 2090.636 kb on + strand, within CCNA_01948at 2090.636 kb on + strand, within CCNA_01948at 2090.644 kb on - strand, within CCNA_01948at 2090.644 kb on - strand, within CCNA_01948at 2090.644 kb on - strand, within CCNA_01948at 2090.659 kb on + strand, within CCNA_01948at 2090.791 kb on - strand, within CCNA_01948at 2090.816 kb on - strand, within CCNA_01948at 2090.829 kb on - strand, within CCNA_01948at 2090.840 kb on + strand, within CCNA_01948at 2090.840 kb on + strand, within CCNA_01948at 2090.840 kb on + strand, within CCNA_01948at 2090.849 kb on + strand, within CCNA_01948at 2090.864 kb on + strand, within CCNA_01948at 2090.864 kb on + strand, within CCNA_01948at 2090.884 kb on - strand, within CCNA_01948at 2090.889 kb on - strand, within CCNA_01948at 2091.008 kb on + strand, within CCNA_01948at 2091.068 kb on - strand, within CCNA_01948at 2091.197 kb on - strand, within CCNA_01948at 2091.216 kb on + strand, within CCNA_01948at 2091.224 kb on - strand, within CCNA_01948at 2091.278 kb on - strand, within CCNA_01948at 2091.356 kb on - strand, within CCNA_01948at 2091.405 kb on - strandat 2091.458 kb on + strandat 2091.458 kb on + strandat 2091.466 kb on - strandat 2091.536 kb on - strandat 2091.599 kb on + strand, within CCNA_01949at 2091.607 kb on - strand, within CCNA_01949at 2091.622 kb on + strand, within CCNA_01949at 2091.622 kb on + strand, within CCNA_01949at 2091.732 kb on - strand, within CCNA_01949at 2091.742 kb on - strand, within CCNA_01949at 2091.759 kb on - strand, within CCNA_01949at 2091.895 kb on - strand, within CCNA_01949at 2091.975 kb on + strandat 2091.993 kb on - strandat 2092.008 kb on + strandat 2092.055 kb on + strandat 2092.082 kb on + strandat 2092.082 kb on + strandat 2092.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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2,090,526 - CCNA_01948 0.14 -0.1
2,090,548 + CCNA_01948 0.16 +0.2
2,090,614 + CCNA_01948 0.22 +1.0
2,090,614 + CCNA_01948 0.22 +0.7
2,090,636 + CCNA_01948 0.24 +0.5
2,090,636 + CCNA_01948 0.24 +0.4
2,090,644 - CCNA_01948 0.24 -0.2
2,090,644 - CCNA_01948 0.24 -0.3
2,090,644 - CCNA_01948 0.24 -0.5
2,090,659 + CCNA_01948 0.26 +0.4
2,090,791 - CCNA_01948 0.37 -1.0
2,090,816 - CCNA_01948 0.39 -0.6
2,090,829 - CCNA_01948 0.40 -1.6
2,090,840 + CCNA_01948 0.41 +1.7
2,090,840 + CCNA_01948 0.41 +0.6
2,090,840 + CCNA_01948 0.41 +1.7
2,090,849 + CCNA_01948 0.42 +0.4
2,090,864 + CCNA_01948 0.43 +0.1
2,090,864 + CCNA_01948 0.43 +0.1
2,090,884 - CCNA_01948 0.45 +1.2
2,090,889 - CCNA_01948 0.46 -0.1
2,091,008 + CCNA_01948 0.56 +0.7
2,091,068 - CCNA_01948 0.61 -0.7
2,091,197 - CCNA_01948 0.72 +0.8
2,091,216 + CCNA_01948 0.74 +0.7
2,091,224 - CCNA_01948 0.75 +0.5
2,091,278 - CCNA_01948 0.79 +0.2
2,091,356 - CCNA_01948 0.86 -0.8
2,091,405 - -0.3
2,091,458 + +0.1
2,091,458 + +0.1
2,091,466 - +0.2
2,091,536 - +1.0
2,091,599 + CCNA_01949 0.21 +0.3
2,091,607 - CCNA_01949 0.23 -0.4
2,091,622 + CCNA_01949 0.26 +0.1
2,091,622 + CCNA_01949 0.26 +0.2
2,091,732 - CCNA_01949 0.49 +0.7
2,091,742 - CCNA_01949 0.51 +0.1
2,091,759 - CCNA_01949 0.54 +0.2
2,091,895 - CCNA_01949 0.82 -0.8
2,091,975 + +0.0
2,091,993 - +1.8
2,092,008 + +1.0
2,092,055 + -0.1
2,092,082 + -0.7
2,092,082 + +0.3
2,092,090 - +0.6

Or see this region's nucleotide sequence