Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01805 and CCNA_01806 are separated by 19 nucleotides CCNA_01806 and CCNA_01807 are separated by 32 nucleotides
CCNA_01805: CCNA_01805 - dihydrolipoamide dehydrogenase, at 1,928,791 to 1,930,191
_01805
CCNA_01806: CCNA_01806 - ferritin-like domain protein, at 1,930,211 to 1,931,668
_01806
CCNA_01807: CCNA_01807 - acyl-acyl carrier protein synthetase, at 1,931,701 to 1,933,254
_01807
Position (kb)
1930
1931
1932 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1929.217 kb on + strand, within CCNA_01805 at 1929.282 kb on + strand, within CCNA_01805 at 1930.261 kb on - strand at 1930.271 kb on - strand at 1930.329 kb on + strand at 1930.356 kb on - strand at 1930.371 kb on + strand, within CCNA_01806 at 1930.371 kb on + strand, within CCNA_01806 at 1930.529 kb on + strand, within CCNA_01806 at 1930.529 kb on + strand, within CCNA_01806 at 1930.592 kb on + strand, within CCNA_01806 at 1930.595 kb on - strand, within CCNA_01806 at 1930.613 kb on + strand, within CCNA_01806 at 1930.644 kb on - strand, within CCNA_01806 at 1930.678 kb on + strand, within CCNA_01806 at 1930.686 kb on - strand, within CCNA_01806 at 1930.723 kb on + strand, within CCNA_01806 at 1930.784 kb on + strand, within CCNA_01806 at 1930.812 kb on - strand, within CCNA_01806 at 1930.857 kb on + strand, within CCNA_01806 at 1930.937 kb on - strand, within CCNA_01806 at 1930.947 kb on + strand, within CCNA_01806 at 1931.036 kb on + strand, within CCNA_01806 at 1931.068 kb on - strand, within CCNA_01806 at 1931.110 kb on + strand, within CCNA_01806 at 1931.133 kb on + strand, within CCNA_01806 at 1931.141 kb on - strand, within CCNA_01806 at 1931.141 kb on - strand, within CCNA_01806 at 1931.164 kb on + strand, within CCNA_01806 at 1931.193 kb on + strand, within CCNA_01806 at 1931.223 kb on + strand, within CCNA_01806 at 1931.225 kb on + strand, within CCNA_01806 at 1931.255 kb on + strand, within CCNA_01806 at 1931.255 kb on + strand, within CCNA_01806 at 1931.255 kb on + strand, within CCNA_01806 at 1931.255 kb on + strand, within CCNA_01806 at 1931.260 kb on + strand, within CCNA_01806 at 1931.260 kb on + strand, within CCNA_01806 at 1931.268 kb on - strand, within CCNA_01806 at 1931.300 kb on + strand, within CCNA_01806 at 1931.366 kb on + strand, within CCNA_01806 at 1931.366 kb on + strand, within CCNA_01806 at 1931.366 kb on + strand, within CCNA_01806 at 1931.379 kb on - strand, within CCNA_01806 at 1931.389 kb on + strand, within CCNA_01806 at 1931.390 kb on + strand, within CCNA_01806 at 1931.398 kb on - strand, within CCNA_01806 at 1931.398 kb on - strand, within CCNA_01806 at 1931.427 kb on - strand, within CCNA_01806 at 1931.453 kb on - strand, within CCNA_01806 at 1931.460 kb on + strand, within CCNA_01806 at 1931.468 kb on - strand, within CCNA_01806 at 1931.474 kb on + strand, within CCNA_01806 at 1931.474 kb on + strand, within CCNA_01806 at 1931.479 kb on + strand, within CCNA_01806 at 1931.482 kb on - strand, within CCNA_01806 at 1931.578 kb on - strand at 1931.606 kb on - strand at 1931.640 kb on + strand at 1931.706 kb on - strand at 1931.731 kb on + strand at 1931.830 kb on + strand at 1931.904 kb on + strand, within CCNA_01807 at 1931.923 kb on - strand, within CCNA_01807 at 1931.948 kb on - strand, within CCNA_01807 at 1931.965 kb on + strand, within CCNA_01807 at 1931.973 kb on - strand, within CCNA_01807 at 1931.973 kb on - strand, within CCNA_01807 at 1932.048 kb on - strand, within CCNA_01807 at 1932.186 kb on - strand, within CCNA_01807 at 1932.202 kb on + strand, within CCNA_01807 at 1932.217 kb on - strand, within CCNA_01807 at 1932.240 kb on - strand, within CCNA_01807 at 1932.336 kb on + strand, within CCNA_01807 at 1932.344 kb on - strand, within CCNA_01807 at 1932.382 kb on + strand, within CCNA_01807 at 1932.382 kb on + strand, within CCNA_01807 at 1932.390 kb on - strand, within CCNA_01807 at 1932.390 kb on - strand, within CCNA_01807 at 1932.399 kb on + strand, within CCNA_01807 at 1932.495 kb on - strand, within CCNA_01807 at 1932.499 kb on + strand, within CCNA_01807 at 1932.499 kb on + strand, within CCNA_01807 at 1932.504 kb on + strand, within CCNA_01807 at 1932.507 kb on - strand, within CCNA_01807 at 1932.557 kb on - strand, within CCNA_01807 at 1932.567 kb on + strand, within CCNA_01807 at 1932.567 kb on + strand, within CCNA_01807 at 1932.567 kb on + strand, within CCNA_01807 at 1932.628 kb on - strand, within CCNA_01807
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 1,929,217 + CCNA_01805 0.30 -1.6 1,929,282 + CCNA_01805 0.35 -1.1 1,930,261 - -0.9 1,930,271 - -1.2 1,930,329 + +0.7 1,930,356 - +0.8 1,930,371 + CCNA_01806 0.11 +0.4 1,930,371 + CCNA_01806 0.11 +0.7 1,930,529 + CCNA_01806 0.22 -0.3 1,930,529 + CCNA_01806 0.22 +0.6 1,930,592 + CCNA_01806 0.26 +0.2 1,930,595 - CCNA_01806 0.26 -3.0 1,930,613 + CCNA_01806 0.28 -0.4 1,930,644 - CCNA_01806 0.30 +0.6 1,930,678 + CCNA_01806 0.32 -0.2 1,930,686 - CCNA_01806 0.33 +0.2 1,930,723 + CCNA_01806 0.35 -0.5 1,930,784 + CCNA_01806 0.39 +1.0 1,930,812 - CCNA_01806 0.41 +0.4 1,930,857 + CCNA_01806 0.44 +0.3 1,930,937 - CCNA_01806 0.50 +0.2 1,930,947 + CCNA_01806 0.50 -0.8 1,931,036 + CCNA_01806 0.57 -1.0 1,931,068 - CCNA_01806 0.59 -0.2 1,931,110 + CCNA_01806 0.62 -0.5 1,931,133 + CCNA_01806 0.63 -1.5 1,931,141 - CCNA_01806 0.64 -0.5 1,931,141 - CCNA_01806 0.64 +1.1 1,931,164 + CCNA_01806 0.65 +0.7 1,931,193 + CCNA_01806 0.67 +0.2 1,931,223 + CCNA_01806 0.69 -0.5 1,931,225 + CCNA_01806 0.70 +0.1 1,931,255 + CCNA_01806 0.72 +0.2 1,931,255 + CCNA_01806 0.72 +0.3 1,931,255 + CCNA_01806 0.72 +0.9 1,931,255 + CCNA_01806 0.72 +1.0 1,931,260 + CCNA_01806 0.72 +0.1 1,931,260 + CCNA_01806 0.72 +0.4 1,931,268 - CCNA_01806 0.72 -0.4 1,931,300 + CCNA_01806 0.75 +0.7 1,931,366 + CCNA_01806 0.79 +0.3 1,931,366 + CCNA_01806 0.79 -1.2 1,931,366 + CCNA_01806 0.79 +0.5 1,931,379 - CCNA_01806 0.80 +0.2 1,931,389 + CCNA_01806 0.81 -0.5 1,931,390 + CCNA_01806 0.81 +0.8 1,931,398 - CCNA_01806 0.81 -0.6 1,931,398 - CCNA_01806 0.81 -0.8 1,931,427 - CCNA_01806 0.83 +0.2 1,931,453 - CCNA_01806 0.85 -2.3 1,931,460 + CCNA_01806 0.86 +0.6 1,931,468 - CCNA_01806 0.86 +0.6 1,931,474 + CCNA_01806 0.87 -0.0 1,931,474 + CCNA_01806 0.87 +0.0 1,931,479 + CCNA_01806 0.87 +0.6 1,931,482 - CCNA_01806 0.87 -1.2 1,931,578 - -0.9 1,931,606 - +0.5 1,931,640 + -0.0 1,931,706 - +0.9 1,931,731 + -0.9 1,931,830 + -0.3 1,931,904 + CCNA_01807 0.13 +0.1 1,931,923 - CCNA_01807 0.14 +0.4 1,931,948 - CCNA_01807 0.16 -0.7 1,931,965 + CCNA_01807 0.17 -1.9 1,931,973 - CCNA_01807 0.18 +1.0 1,931,973 - CCNA_01807 0.18 +1.4 1,932,048 - CCNA_01807 0.22 +0.7 1,932,186 - CCNA_01807 0.31 +0.6 1,932,202 + CCNA_01807 0.32 -1.6 1,932,217 - CCNA_01807 0.33 +0.9 1,932,240 - CCNA_01807 0.35 +0.7 1,932,336 + CCNA_01807 0.41 +0.4 1,932,344 - CCNA_01807 0.41 +0.1 1,932,382 + CCNA_01807 0.44 +0.9 1,932,382 + CCNA_01807 0.44 +0.2 1,932,390 - CCNA_01807 0.44 -0.1 1,932,390 - CCNA_01807 0.44 -0.4 1,932,399 + CCNA_01807 0.45 -0.8 1,932,495 - CCNA_01807 0.51 -0.1 1,932,499 + CCNA_01807 0.51 -0.7 1,932,499 + CCNA_01807 0.51 -1.0 1,932,504 + CCNA_01807 0.52 -2.3 1,932,507 - CCNA_01807 0.52 -0.4 1,932,557 - CCNA_01807 0.55 -0.6 1,932,567 + CCNA_01807 0.56 -3.1 1,932,567 + CCNA_01807 0.56 -0.6 1,932,567 + CCNA_01807 0.56 -0.3 1,932,628 - CCNA_01807 0.60 -1.2
Or see this region's nucleotide sequence