Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01797

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01795 and CCNA_01797 are separated by 353 nucleotidesCCNA_01797 and CCNA_01799 are separated by 165 nucleotides CCNA_01795: CCNA_01795 - phosphopyruvate hydratase, at 1,921,855 to 1,923,135 _01795 CCNA_01797: CCNA_01797 - FtsB-related septum formation initiator, at 1,923,489 to 1,923,791 _01797 CCNA_01799: CCNA_01799 - pyruvate dehydrogenase E1 component alpha subunit, at 1,923,957 to 1,924,988 _01799 Position (kb) 1923 1924Strain fitness (log2 ratio) -2 -1 0 1at 1922.542 kb on + strand, within CCNA_01795at 1922.738 kb on + strand, within CCNA_01795at 1922.808 kb on + strand, within CCNA_01795at 1922.832 kb on + strand, within CCNA_01795at 1922.835 kb on - strand, within CCNA_01795at 1922.926 kb on + strand, within CCNA_01795at 1922.934 kb on - strand, within CCNA_01795at 1922.968 kb on - strand, within CCNA_01795at 1922.985 kb on + strand, within CCNA_01795at 1923.012 kb on + strandat 1923.049 kb on + strandat 1923.054 kb on + strandat 1923.108 kb on - strandat 1923.126 kb on - strandat 1923.145 kb on + strandat 1923.155 kb on + strandat 1923.190 kb on + strandat 1923.289 kb on + strandat 1923.312 kb on + strandat 1923.356 kb on - strandat 1923.406 kb on + strandat 1923.483 kb on + strandat 1923.758 kb on + strand, within CCNA_01797at 1923.773 kb on + strandat 1923.773 kb on + strandat 1923.798 kb on - strandat 1923.821 kb on + strandat 1923.864 kb on + strandat 1924.395 kb on + strand, within CCNA_01799at 1924.538 kb on + strand, within CCNA_01799

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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1,922,542 + CCNA_01795 0.54 +0.6
1,922,738 + CCNA_01795 0.69 -0.4
1,922,808 + CCNA_01795 0.74 +0.2
1,922,832 + CCNA_01795 0.76 +0.0
1,922,835 - CCNA_01795 0.77 +0.0
1,922,926 + CCNA_01795 0.84 -2.0
1,922,934 - CCNA_01795 0.84 +0.6
1,922,968 - CCNA_01795 0.87 -0.2
1,922,985 + CCNA_01795 0.88 -1.0
1,923,012 + +0.3
1,923,049 + -0.8
1,923,054 + -1.7
1,923,108 - +0.0
1,923,126 - -0.2
1,923,145 + -0.1
1,923,155 + -1.2
1,923,190 + -0.2
1,923,289 + +0.3
1,923,312 + -0.3
1,923,356 - +1.1
1,923,406 + +0.7
1,923,483 + -0.4
1,923,758 + CCNA_01797 0.89 -0.6
1,923,773 + -1.0
1,923,773 + -1.2
1,923,798 - +0.0
1,923,821 + +0.8
1,923,864 + +0.6
1,924,395 + CCNA_01799 0.42 +0.6
1,924,538 + CCNA_01799 0.56 +0.5

Or see this region's nucleotide sequence