Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01792

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01791 and CCNA_01792 are separated by 114 nucleotidesCCNA_01792 and CCNA_01793 are separated by 123 nucleotides CCNA_01791: CCNA_01791 - CTP synthase, at 1,917,887 to 1,919,539 _01791 CCNA_01792: CCNA_01792 - LSU ribosomal protein L32P, at 1,919,654 to 1,919,836 _01792 CCNA_01793: CCNA_01793 - aspartate protease, at 1,919,960 to 1,920,958 _01793 Position (kb) 1919 1920Strain fitness (log2 ratio) -1 0 1 2at 1919.958 kb on - strandat 1919.987 kb on + strandat 1919.988 kb on - strandat 1920.050 kb on + strandat 1920.079 kb on + strand, within CCNA_01793at 1920.218 kb on + strand, within CCNA_01793at 1920.225 kb on + strand, within CCNA_01793at 1920.226 kb on - strand, within CCNA_01793at 1920.233 kb on - strand, within CCNA_01793at 1920.233 kb on - strand, within CCNA_01793at 1920.233 kb on - strand, within CCNA_01793at 1920.233 kb on - strand, within CCNA_01793at 1920.244 kb on + strand, within CCNA_01793at 1920.252 kb on - strand, within CCNA_01793at 1920.311 kb on + strand, within CCNA_01793at 1920.347 kb on - strand, within CCNA_01793at 1920.496 kb on + strand, within CCNA_01793at 1920.628 kb on + strand, within CCNA_01793at 1920.659 kb on - strand, within CCNA_01793at 1920.723 kb on - strand, within CCNA_01793at 1920.725 kb on + strand, within CCNA_01793

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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1,919,958 - -0.2
1,919,987 + +0.3
1,919,988 - -1.1
1,920,050 + +0.0
1,920,079 + CCNA_01793 0.12 +0.4
1,920,218 + CCNA_01793 0.26 +0.6
1,920,225 + CCNA_01793 0.27 +0.5
1,920,226 - CCNA_01793 0.27 +0.2
1,920,233 - CCNA_01793 0.27 +0.0
1,920,233 - CCNA_01793 0.27 +0.5
1,920,233 - CCNA_01793 0.27 +0.3
1,920,233 - CCNA_01793 0.27 +0.2
1,920,244 + CCNA_01793 0.28 +0.7
1,920,252 - CCNA_01793 0.29 -0.3
1,920,311 + CCNA_01793 0.35 +0.4
1,920,347 - CCNA_01793 0.39 +0.2
1,920,496 + CCNA_01793 0.54 +0.3
1,920,628 + CCNA_01793 0.67 +0.3
1,920,659 - CCNA_01793 0.70 -0.4
1,920,723 - CCNA_01793 0.76 +2.3
1,920,725 + CCNA_01793 0.77 +0.4

Or see this region's nucleotide sequence