Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01725 and CCNA_01726 are separated by 125 nucleotides CCNA_01726 and CCNA_01727 are separated by 78 nucleotides
CCNA_01725: CCNA_01725 - beta-barrel assembly machine (BAM) protein BamB, at 1,851,328 to 1,852,758
_01725
CCNA_01726: CCNA_01726 - EngA-subfamily GTPase protein, at 1,852,884 to 1,854,650
_01726
CCNA_01727: CCNA_01727 - methyl-accepting chemotaxis protein, at 1,854,729 to 1,856,234
_01727
Position (kb)
1852
1853
1854
1855 Strain fitness (log2 ratio)
-1
0
1 at 1852.792 kb on - strand at 1852.793 kb on - strand at 1852.820 kb on + strand at 1854.314 kb on + strand, within CCNA_01726 at 1854.314 kb on + strand, within CCNA_01726 at 1854.543 kb on - strand at 1854.620 kb on + strand at 1854.644 kb on + strand at 1854.644 kb on + strand at 1854.644 kb on + strand at 1854.793 kb on + strand at 1854.839 kb on + strand at 1854.870 kb on + strand at 1854.880 kb on + strand, within CCNA_01727 at 1854.927 kb on + strand, within CCNA_01727 at 1854.943 kb on + strand, within CCNA_01727 at 1854.977 kb on + strand, within CCNA_01727 at 1855.014 kb on - strand, within CCNA_01727 at 1855.024 kb on + strand, within CCNA_01727 at 1855.025 kb on - strand, within CCNA_01727 at 1855.107 kb on + strand, within CCNA_01727 at 1855.109 kb on - strand, within CCNA_01727 at 1855.115 kb on - strand, within CCNA_01727 at 1855.149 kb on - strand, within CCNA_01727 at 1855.212 kb on - strand, within CCNA_01727 at 1855.234 kb on - strand, within CCNA_01727 at 1855.421 kb on - strand, within CCNA_01727 at 1855.431 kb on + strand, within CCNA_01727 at 1855.498 kb on - strand, within CCNA_01727 at 1855.528 kb on - strand, within CCNA_01727 at 1855.546 kb on - strand, within CCNA_01727 at 1855.578 kb on + strand, within CCNA_01727 at 1855.645 kb on - strand, within CCNA_01727 at 1855.647 kb on + strand, within CCNA_01727
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 1,852,792 - -0.0 1,852,793 - +0.2 1,852,820 + +0.6 1,854,314 + CCNA_01726 0.81 -1.3 1,854,314 + CCNA_01726 0.81 -0.4 1,854,543 - -1.4 1,854,620 + -0.1 1,854,644 + -0.1 1,854,644 + +0.5 1,854,644 + +0.5 1,854,793 + -1.3 1,854,839 + -0.3 1,854,870 + +0.4 1,854,880 + CCNA_01727 0.10 +1.1 1,854,927 + CCNA_01727 0.13 +0.0 1,854,943 + CCNA_01727 0.14 -0.5 1,854,977 + CCNA_01727 0.16 +0.9 1,855,014 - CCNA_01727 0.19 +0.5 1,855,024 + CCNA_01727 0.20 +0.1 1,855,025 - CCNA_01727 0.20 +0.3 1,855,107 + CCNA_01727 0.25 +0.0 1,855,109 - CCNA_01727 0.25 -0.4 1,855,115 - CCNA_01727 0.26 +0.6 1,855,149 - CCNA_01727 0.28 +0.4 1,855,212 - CCNA_01727 0.32 +1.7 1,855,234 - CCNA_01727 0.34 +0.4 1,855,421 - CCNA_01727 0.46 +0.8 1,855,431 + CCNA_01727 0.47 +0.0 1,855,498 - CCNA_01727 0.51 +0.9 1,855,528 - CCNA_01727 0.53 -1.5 1,855,546 - CCNA_01727 0.54 -0.1 1,855,578 + CCNA_01727 0.56 -0.2 1,855,645 - CCNA_01727 0.61 +1.4 1,855,647 + CCNA_01727 0.61 -0.8
Or see this region's nucleotide sequence