Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01630 and CCNA_01632 are separated by 303 nucleotides CCNA_01632 and CCNA_01633 are separated by 149 nucleotides
CCNA_01630: CCNA_01630 - ribonuclease III, at 1,750,026 to 1,750,721
_01630
CCNA_01632: CCNA_01632 - hypothetical protein, at 1,751,025 to 1,751,486
_01632
CCNA_01633: CCNA_01633 - GTP-binding protein era, at 1,751,636 to 1,752,586
_01633
Position (kb)
1751
1752 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1750.697 kb on + strand at 1750.716 kb on + strand at 1750.724 kb on - strand at 1750.724 kb on - strand at 1750.724 kb on - strand at 1750.746 kb on - strand at 1750.785 kb on - strand at 1750.793 kb on - strand at 1750.818 kb on - strand at 1750.825 kb on + strand at 1750.828 kb on - strand at 1750.892 kb on + strand at 1750.902 kb on + strand at 1750.902 kb on + strand at 1750.908 kb on - strand at 1750.908 kb on - strand at 1750.913 kb on + strand at 1750.930 kb on - strand at 1750.971 kb on + strand at 1750.973 kb on + strand at 1750.973 kb on + strand at 1750.973 kb on + strand at 1750.981 kb on - strand at 1750.981 kb on - strand at 1750.981 kb on - strand at 1751.010 kb on - strand at 1751.034 kb on + strand at 1751.051 kb on + strand at 1751.052 kb on - strand at 1751.059 kb on - strand at 1751.067 kb on + strand at 1751.085 kb on + strand, within CCNA_01632 at 1751.085 kb on + strand, within CCNA_01632 at 1751.093 kb on - strand, within CCNA_01632 at 1751.119 kb on + strand, within CCNA_01632 at 1751.142 kb on + strand, within CCNA_01632 at 1751.161 kb on - strand, within CCNA_01632 at 1751.207 kb on + strand, within CCNA_01632 at 1751.232 kb on + strand, within CCNA_01632 at 1751.232 kb on + strand, within CCNA_01632 at 1751.240 kb on - strand, within CCNA_01632 at 1751.251 kb on - strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.288 kb on + strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.296 kb on - strand, within CCNA_01632 at 1751.298 kb on + strand, within CCNA_01632 at 1751.298 kb on + strand, within CCNA_01632 at 1751.317 kb on - strand, within CCNA_01632 at 1751.400 kb on + strand, within CCNA_01632 at 1751.454 kb on + strand at 1751.454 kb on + strand at 1751.454 kb on + strand at 1751.454 kb on + strand at 1751.462 kb on - strand at 1751.462 kb on - strand at 1751.467 kb on + strand at 1751.475 kb on - strand at 1751.475 kb on - strand at 1751.493 kb on + strand at 1751.493 kb on + strand at 1751.495 kb on + strand at 1751.509 kb on - strand at 1751.526 kb on - strand at 1751.626 kb on - strand at 1751.626 kb on - strand at 1751.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 1,750,697 + +0.6 1,750,716 + +0.3 1,750,724 - -0.4 1,750,724 - -1.3 1,750,724 - -2.5 1,750,746 - -0.2 1,750,785 - +0.8 1,750,793 - +1.0 1,750,818 - -1.4 1,750,825 + +0.5 1,750,828 - +0.3 1,750,892 + -0.3 1,750,902 + +0.2 1,750,902 + -0.4 1,750,908 - -1.7 1,750,908 - -0.3 1,750,913 + +0.5 1,750,930 - -1.3 1,750,971 + -0.1 1,750,973 + +0.2 1,750,973 + -0.3 1,750,973 + +0.7 1,750,981 - +0.3 1,750,981 - +0.0 1,750,981 - +1.6 1,751,010 - -0.6 1,751,034 + -0.4 1,751,051 + -0.4 1,751,052 - -0.6 1,751,059 - +0.5 1,751,067 + +0.5 1,751,085 + CCNA_01632 0.13 -0.7 1,751,085 + CCNA_01632 0.13 +0.3 1,751,093 - CCNA_01632 0.15 -0.8 1,751,119 + CCNA_01632 0.20 -1.1 1,751,142 + CCNA_01632 0.25 -1.3 1,751,161 - CCNA_01632 0.29 +0.8 1,751,207 + CCNA_01632 0.39 +0.1 1,751,232 + CCNA_01632 0.45 -0.5 1,751,232 + CCNA_01632 0.45 -0.7 1,751,240 - CCNA_01632 0.47 +0.2 1,751,251 - CCNA_01632 0.49 -0.4 1,751,288 + CCNA_01632 0.57 -1.6 1,751,288 + CCNA_01632 0.57 +0.3 1,751,288 + CCNA_01632 0.57 -0.4 1,751,288 + CCNA_01632 0.57 -2.8 1,751,288 + CCNA_01632 0.57 -0.9 1,751,288 + CCNA_01632 0.57 +0.2 1,751,288 + CCNA_01632 0.57 -0.9 1,751,296 - CCNA_01632 0.59 -0.1 1,751,296 - CCNA_01632 0.59 +0.3 1,751,296 - CCNA_01632 0.59 -0.3 1,751,296 - CCNA_01632 0.59 +0.3 1,751,296 - CCNA_01632 0.59 -0.7 1,751,296 - CCNA_01632 0.59 -2.1 1,751,298 + CCNA_01632 0.59 -0.1 1,751,298 + CCNA_01632 0.59 +1.4 1,751,317 - CCNA_01632 0.63 +0.3 1,751,400 + CCNA_01632 0.81 -0.9 1,751,454 + -0.5 1,751,454 + -0.5 1,751,454 + -2.0 1,751,454 + -1.2 1,751,462 - +0.8 1,751,462 - +0.6 1,751,467 + +1.3 1,751,475 - +1.6 1,751,475 - -0.9 1,751,493 + -2.2 1,751,493 + -0.0 1,751,495 + +0.4 1,751,509 - -0.5 1,751,526 - -0.2 1,751,626 - -0.5 1,751,626 - -0.0 1,751,626 - +0.7
Or see this region's nucleotide sequence