Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01224

Experiment: PYE with CHIR-090 4 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 4 ug/mL
1,349,762	+		CCNA_01223	0.44	-0.8
1,349,789	+		CCNA_01223	0.46	-1.2
1,349,807	+		CCNA_01223	0.47	-1.8
1,349,807	+		CCNA_01223	0.47	-3.3
1,349,807	+		CCNA_01223	0.47	-1.9
1,349,812	+		CCNA_01223	0.47	-3.3
1,349,818	+		CCNA_01223	0.47	-2.8
1,349,820	-		CCNA_01223	0.47	-2.6
1,349,820	-		CCNA_01223	0.47	-2.8
1,349,843	-		CCNA_01223	0.49	-1.9
1,349,902	-		CCNA_01223	0.52	-2.9
1,349,916	+		CCNA_01223	0.53	-4.1
1,349,943	-		CCNA_01223	0.55	-2.7
1,349,981	-		CCNA_01223	0.57	-2.6
1,349,991	-		CCNA_01223	0.57	-3.4
1,350,031	+		CCNA_01223	0.60	-2.2
1,350,034	-		CCNA_01223	0.60	-3.5
1,350,037	+		CCNA_01223	0.60	-1.1
1,350,074	-		CCNA_01223	0.62	-1.0
1,350,078	+		CCNA_01223	0.62	-3.8
1,350,085	+		CCNA_01223	0.63	-2.9
1,350,093	-		CCNA_01223	0.63	-1.4
1,350,197	-		CCNA_01223	0.69	-3.7
1,350,226	+		CCNA_01223	0.71	-1.4
1,350,266	+		CCNA_01223	0.73	-4.9
1,350,266	+		CCNA_01223	0.73	-1.7
1,350,305	-		CCNA_01223	0.76	-2.8
1,350,355	+		CCNA_01223	0.78	-1.3
1,350,355	+		CCNA_01223	0.78	-1.0
1,350,358	-		CCNA_01223	0.79	-2.6
1,350,409	-		CCNA_01223	0.82	-2.6
1,350,422	+		CCNA_01223	0.82	-2.1
1,350,430	-		CCNA_01223	0.83	-2.0
1,350,501	-		CCNA_01223	0.87	-0.3
1,350,505	-		CCNA_01223	0.87	-3.8
1,350,559	+				-3.7
1,350,559	+				-3.4
1,350,559	+				-3.0
1,350,564	+				-2.1
1,350,564	+				-3.1
1,350,569	+				-1.0
1,350,572	-				-2.7
1,350,572	-				-1.4
1,350,572	-				-2.1
1,350,576	+				-3.2
1,350,576	+				-2.5
1,350,576	+				-2.2
1,350,576	+				-2.5
1,350,577	-				-3.1
1,350,577	-				-3.2
1,350,577	-				-4.6
1,350,577	-				-2.1
1,350,584	-				-3.2
1,350,650	+				-2.0
1,350,653	-				-1.2
1,350,658	-				-2.1
1,350,671	+				-2.3
1,350,726	+				-0.7
1,350,734	-				-0.3
1,350,862	-				-0.0
1,350,902	-		CCNA_01224	0.13	-1.4
1,350,902	-		CCNA_01224	0.13	-0.9
1,351,042	+		CCNA_01224	0.23	-1.0
1,351,049	-		CCNA_01224	0.24	-2.2
1,351,053	+		CCNA_01224	0.24	-1.3
1,351,124	-		CCNA_01224	0.30	-0.0
1,351,144	+		CCNA_01224	0.31	-0.9
1,351,168	-		CCNA_01224	0.33	-2.3
1,351,184	+		CCNA_01224	0.34	-1.8
1,351,227	-		CCNA_01224	0.37	-1.4
1,351,276	+		CCNA_01224	0.41	-0.8
1,351,333	-		CCNA_01224	0.45	-1.4
1,351,397	-		CCNA_01224	0.50	-2.1
1,351,416	+		CCNA_01224	0.52	-0.3
1,351,424	-		CCNA_01224	0.52	-1.0
1,351,487	-		CCNA_01224	0.57	-0.8
1,351,514	-		CCNA_01224	0.59	-1.7
1,351,543	+		CCNA_01224	0.61	-1.3
1,351,646	-		CCNA_01224	0.69	-1.8
1,351,658	+		CCNA_01224	0.70	-1.2
1,351,667	-		CCNA_01224	0.70	-1.0
1,351,678	-		CCNA_01224	0.71	-1.0
1,351,678	-		CCNA_01224	0.71	-0.5
1,351,695	-		CCNA_01224	0.73	-0.3
1,351,746	+		CCNA_01224	0.76	+0.5
1,351,754	-		CCNA_01224	0.77	-4.0
1,351,754	-		CCNA_01224	0.77	-3.3
1,351,754	-		CCNA_01224	0.77	-3.7
1,351,754	-		CCNA_01224	0.77	-1.0
1,351,754	-		CCNA_01224	0.77	-2.0
1,351,764	-		CCNA_01224	0.78	-1.8
1,351,764	-		CCNA_01224	0.78	-1.7
1,351,764	-		CCNA_01224	0.78	-1.3
1,351,882	+		CCNA_01224	0.87	-0.0
1,351,959	+				-1.3
1,351,960	+				-0.1
1,351,960	+				-0.5
1,351,963	-				-1.2
1,351,968	-				-1.3
1,351,968	-				-2.0
1,352,019	+				-1.5
1,352,022	-				-0.1
1,352,037	-				+1.4
1,352,117	+				-1.9
1,352,142	-				-0.4
1,352,151	+				-1.2
1,352,151	+				-0.4
1,352,222	+		CCNA_01225	0.15	-0.6
1,352,230	-		CCNA_01225	0.15	+0.3
1,352,241	+		CCNA_01225	0.16	-0.9
1,352,255	+		CCNA_01225	0.18	+1.5
1,352,256	-		CCNA_01225	0.18	+0.2
1,352,271	-		CCNA_01225	0.19	-2.8
1,352,313	-		CCNA_01225	0.23	+0.0
1,352,321	-		CCNA_01225	0.23	-0.6
1,352,325	+		CCNA_01225	0.24	-2.2
1,352,333	-		CCNA_01225	0.24	+0.7
1,352,353	+		CCNA_01225	0.26	-3.1
1,352,353	+		CCNA_01225	0.26	-2.3
1,352,357	-		CCNA_01225	0.27	-0.5
1,352,361	-		CCNA_01225	0.27	-0.7
1,352,361	-		CCNA_01225	0.27	-1.5
1,352,368	+		CCNA_01225	0.28	-0.3
1,352,371	+		CCNA_01225	0.28	-1.3
1,352,381	-		CCNA_01225	0.29	+0.3
1,352,420	-		CCNA_01225	0.32	-0.6
1,352,462	+		CCNA_01225	0.36	+1.0
1,352,480	-		CCNA_01225	0.38	-0.7
1,352,527	-		CCNA_01225	0.42	-0.3
1,352,534	+		CCNA_01225	0.42	-1.2
1,352,534	+		CCNA_01225	0.42	-0.7
1,352,568	-		CCNA_01225	0.45	-0.5
1,352,573	-		CCNA_01225	0.46	+1.9
1,352,575	-		CCNA_01225	0.46	-0.8
1,352,608	+		CCNA_01225	0.49	+1.0
1,352,675	+		CCNA_01225	0.55	-0.9
1,352,700	-		CCNA_01225	0.57	+0.8
1,352,727	-		CCNA_01225	0.59	+0.0
1,352,734	+		CCNA_01225	0.60	-0.4
1,352,734	+		CCNA_01225	0.60	-0.2
1,352,734	+		CCNA_01225	0.60	-0.1
1,352,734	+		CCNA_01225	0.60	-0.3
1,352,734	+		CCNA_01225	0.60	+1.0
1,352,734	+		CCNA_01225	0.60	-0.8
1,352,734	+		CCNA_01225	0.60	-0.5
1,352,742	-		CCNA_01225	0.61	+0.6
1,352,748	+		CCNA_01225	0.61	+0.4
1,352,756	-		CCNA_01225	0.62	+0.1
1,352,757	+		CCNA_01225	0.62	-0.5
1,352,767	+		CCNA_01225	0.63	-1.4
1,352,779	+		CCNA_01225	0.64	-1.7
1,352,787	-		CCNA_01225	0.65	-0.5
1,352,787	-		CCNA_01225	0.65	-0.2
1,352,787	-		CCNA_01225	0.65	+0.1
1,352,817	+		CCNA_01225	0.67	-0.4
1,352,817	+		CCNA_01225	0.67	+0.3
1,352,825	-		CCNA_01225	0.68	+0.1
1,352,825	-		CCNA_01225	0.68	-0.3
1,352,842	+		CCNA_01225	0.70	-0.8
1,352,850	-		CCNA_01225	0.70	-0.0
1,352,877	+		CCNA_01225	0.73	+1.7
1,352,885	-		CCNA_01225	0.73	+0.6
1,352,984	+		CCNA_01225	0.82	-0.8
1,352,989	+		CCNA_01225	0.83	-0.0
1,352,998	-		CCNA_01225	0.83	+0.4
1,353,023	-		CCNA_01225	0.86	+0.2
1,353,039	+		CCNA_01225	0.87	-1.2
1,353,047	-		CCNA_01225	0.88	-0.1
1,353,049	+		CCNA_01225	0.88	-0.8
1,353,049	-		CCNA_01225	0.88	-0.7
1,353,058	+		CCNA_01225	0.89	-1.9