Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01135

Experiment: PYE with CHIR-090 4 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 4 ug/mL
1,238,031	-		CCNA_01133	0.31	+0.3
1,238,126	-		CCNA_01133	0.49	+0.2
1,238,127	+		CCNA_01133	0.49	-0.0
1,238,132	+		CCNA_01133	0.50	-1.1
1,238,132	+		CCNA_01133	0.50	-0.4
1,238,135	-		CCNA_01133	0.50	+0.4
1,238,145	-		CCNA_01133	0.52	+0.5
1,238,145	-		CCNA_01133	0.52	+1.0
1,238,210	+		CCNA_01133	0.64	+0.2
1,238,223	-		CCNA_01133	0.67	+0.4
1,238,301	-		CCNA_01133	0.82	-0.4
1,238,321	-		CCNA_01133	0.85	-1.0
1,238,345	-		CCNA_01133	0.90	-0.4
1,238,347	+				+0.6
1,238,366	+				+0.4
1,238,383	+				+0.2
1,238,386	-				-0.3
1,238,386	-				+0.6
1,238,400	+				+0.8
1,238,400	+				+1.2
1,238,407	+				-0.5
1,238,407	+				-0.0
1,238,410	-				+0.4
1,238,415	-				+0.6
1,238,415	-				+0.0
1,238,433	+				+0.6
1,238,518	+				-1.1
1,238,526	-				-1.2
1,238,575	+		CCNA_01134	0.13	+1.9
1,238,587	+		CCNA_01134	0.16	-1.4
1,238,587	+		CCNA_01134	0.16	-0.5
1,238,595	-		CCNA_01134	0.18	+0.7
1,238,595	-		CCNA_01134	0.18	+2.1
1,238,595	-		CCNA_01134	0.18	-0.7
1,238,615	-		CCNA_01134	0.23	-0.2
1,238,679	+		CCNA_01134	0.38	+0.2
1,238,718	+		CCNA_01134	0.48	+0.2
1,238,726	-		CCNA_01134	0.50	-1.1
1,238,726	-		CCNA_01134	0.50	+0.4
1,238,754	-		CCNA_01134	0.57	-1.6
1,238,754	-		CCNA_01134	0.57	-0.4
1,238,819	+		CCNA_01134	0.72	-1.9
1,238,824	+		CCNA_01134	0.73	-0.3
1,238,859	+		CCNA_01134	0.82	-0.1
1,238,869	+		CCNA_01134	0.84	+0.2
1,238,896	+				+0.1
1,238,901	+				-0.6
1,238,913	+				+0.5
1,238,921	-				+0.2
1,238,921	-				-0.2
1,238,935	+				+0.1
1,238,936	+				+0.2
1,238,936	+				+0.2
1,238,944	-				+0.3
1,238,944	-				+0.3
1,238,970	+				+0.6
1,238,970	+				+0.9
1,238,970	+				-1.5
1,238,970	+				+1.9
1,238,970	+				-0.5
1,238,978	-				-1.2
1,239,044	-		CCNA_01135	0.23	+0.8
1,239,058	+		CCNA_01135	0.27	-0.5
1,239,060	+		CCNA_01135	0.28	-0.6
1,239,159	+		CCNA_01135	0.59	+1.0
1,239,167	+		CCNA_01135	0.61	+1.5
1,239,174	+		CCNA_01135	0.64	+0.3
1,239,180	+		CCNA_01135	0.65	-0.5
1,239,219	+		CCNA_01135	0.78	+0.4
1,239,227	-		CCNA_01135	0.80	+0.6
1,239,285	+				+0.3
1,239,363	+				+0.3
1,239,364	+				+0.5
1,239,384	+				+0.5
1,239,384	+				-0.5
1,239,400	-				-0.1
1,239,411	-				-1.5
1,239,425	+				-0.2
1,239,431	-				-0.5
1,239,433	-				+0.7
1,239,433	-				-0.7
1,239,436	+				+0.0
1,239,441	+				-0.1
1,239,444	-				-1.7
1,239,449	-				-0.5
1,239,449	-				-0.1
1,239,499	+		CCNA_01136	0.11	+0.2
1,239,499	+		CCNA_01136	0.11	+1.2
1,239,499	+		CCNA_01136	0.11	+0.1
1,239,499	+		CCNA_01136	0.11	+0.1
1,239,506	-		CCNA_01136	0.12	-0.2
1,239,507	-		CCNA_01136	0.12	-0.4
1,239,507	-		CCNA_01136	0.12	-0.6
1,239,543	+		CCNA_01136	0.16	+0.5
1,239,584	+		CCNA_01136	0.21	+0.4
1,239,591	+		CCNA_01136	0.21	-0.0
1,239,591	+		CCNA_01136	0.21	+0.0
1,239,592	+		CCNA_01136	0.22	-0.4
1,239,592	+		CCNA_01136	0.22	-1.5
1,239,592	+		CCNA_01136	0.22	-0.1
1,239,592	-		CCNA_01136	0.22	+0.9
1,239,599	-		CCNA_01136	0.22	-1.4
1,239,600	-		CCNA_01136	0.22	-0.4
1,239,631	+		CCNA_01136	0.26	-1.0
1,239,646	-		CCNA_01136	0.28	+0.1
1,239,674	-		CCNA_01136	0.31	-0.8
1,239,688	+		CCNA_01136	0.32	-0.2
1,239,705	+		CCNA_01136	0.34	-1.5
1,239,705	+		CCNA_01136	0.34	-0.9
1,239,855	+		CCNA_01136	0.51	-1.9
1,239,855	+		CCNA_01136	0.51	+1.7
1,239,855	+		CCNA_01136	0.51	-1.3
1,239,860	+		CCNA_01136	0.52	-0.4
1,239,860	+		CCNA_01136	0.52	-0.4
1,239,865	-		CCNA_01136	0.52	-0.8
1,239,868	-		CCNA_01136	0.53	+0.5
1,239,868	-		CCNA_01136	0.53	-0.6
1,239,870	+		CCNA_01136	0.53	-0.6
1,239,893	-		CCNA_01136	0.55	-0.0
1,239,914	+		CCNA_01136	0.58	-0.2
1,239,920	+		CCNA_01136	0.58	-0.0
1,239,946	+		CCNA_01136	0.61	+0.3
1,239,974	-		CCNA_01136	0.64	-1.5
1,239,976	+		CCNA_01136	0.65	+0.7
1,239,976	+		CCNA_01136	0.65	+0.2
1,239,976	+		CCNA_01136	0.65	+0.4
1,239,976	+		CCNA_01136	0.65	+0.2
1,239,976	+		CCNA_01136	0.65	-0.0
1,239,984	-		CCNA_01136	0.66	+2.1
1,239,984	-		CCNA_01136	0.66	-1.6
1,239,984	-		CCNA_01136	0.66	+1.8
1,239,984	-		CCNA_01136	0.66	-0.3
1,239,984	-		CCNA_01136	0.66	-0.6
1,239,984	-		CCNA_01136	0.66	-1.2
1,239,984	-		CCNA_01136	0.66	-1.0
1,240,000	-		CCNA_01136	0.67	-2.7
1,240,000	-		CCNA_01136	0.67	-0.8
1,240,058	+		CCNA_01136	0.74	-0.8
1,240,084	+		CCNA_01136	0.77	-2.0
1,240,123	-		CCNA_01136	0.81	-0.3
1,240,138	-		CCNA_01136	0.83	-2.5
1,240,145	+		CCNA_01136	0.84	+0.5
1,240,145	+		CCNA_01136	0.84	-0.1
1,240,153	-		CCNA_01136	0.85	-0.5
1,240,194	+		CCNA_01136	0.89	+0.0
1,240,203	-				+0.4
1,240,203	-				-1.4
1,240,218	-				-0.2
1,240,249	+				+0.4
1,240,262	+				-0.3
1,240,262	-				-0.1
1,240,272	-				+0.1