Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01047

Experiment: PYE with CHIR-090 4 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 4 ug/mL
1,141,238	+		CCNA_01046	0.22	-0.8
1,141,277	+		CCNA_01046	0.28	-2.0
1,141,285	-		CCNA_01046	0.29	+0.5
1,141,285	-		CCNA_01046	0.29	-0.9
1,141,324	-		CCNA_01046	0.35	+0.6
1,141,326	+		CCNA_01046	0.36	-2.0
1,141,328	-		CCNA_01046	0.36	-0.5
1,141,365	-		CCNA_01046	0.42	+0.2
1,141,381	+		CCNA_01046	0.44	-0.6
1,141,387	-		CCNA_01046	0.45	+0.3
1,141,388	-		CCNA_01046	0.45	-0.1
1,141,400	+		CCNA_01046	0.47	-0.6
1,141,400	+		CCNA_01046	0.47	-1.4
1,141,408	-		CCNA_01046	0.48	+0.4
1,141,408	-		CCNA_01046	0.48	-0.1
1,141,408	-		CCNA_01046	0.48	+0.2
1,141,438	+		CCNA_01046	0.53	-1.8
1,141,449	+		CCNA_01046	0.54	-0.4
1,141,463	-		CCNA_01046	0.57	+0.5
1,141,478	+		CCNA_01046	0.59	+1.2
1,141,478	+		CCNA_01046	0.59	+0.0
1,141,478	+		CCNA_01046	0.59	-1.9
1,141,486	-		CCNA_01046	0.60	+0.0
1,141,486	-		CCNA_01046	0.60	-0.5
1,141,510	+		CCNA_01046	0.64	-1.0
1,141,577	+		CCNA_01046	0.74	+0.3
1,141,596	-		CCNA_01046	0.77	-0.1
1,141,596	-		CCNA_01046	0.77	+0.1
1,141,609	+		CCNA_01046	0.79	+1.1
1,141,612	-		CCNA_01046	0.79	-0.2
1,141,617	-		CCNA_01046	0.80	-0.1
1,141,617	-		CCNA_01046	0.80	+0.0
1,141,633	+		CCNA_01046	0.83	+1.1
1,141,633	+		CCNA_01046	0.83	+0.2
1,141,638	+		CCNA_01046	0.83	-0.6
1,141,638	+		CCNA_01046	0.83	-1.0
1,141,639	-		CCNA_01046	0.83	-0.5
1,141,639	-		CCNA_01046	0.83	-0.8
1,141,668	-		CCNA_01046	0.88	-0.7
1,141,693	+				+0.8
1,141,701	-				-0.7
1,141,701	-				-0.5
1,141,719	+				-0.8
1,141,735	-				-0.3
1,141,735	-				+0.1
1,141,735	-				-0.4
1,141,988	+				+0.3
1,142,087	-				+0.5
1,142,136	+				+0.8
1,142,162	-				-0.7
1,142,164	-				-0.2
1,142,183	+				-0.8
1,142,223	+				-0.1
1,142,236	-				+0.3
1,142,245	-				-0.9
1,142,271	+				-0.3
1,142,271	+				-0.7
1,142,279	-				-2.8
1,142,279	-				+0.2
1,142,293	-				-0.6
1,142,342	+				+0.9
1,142,383	+				-0.3
1,142,401	+				-2.3
1,142,488	-				-2.2
1,142,529	+		CCNA_01047	0.11	-1.5
1,142,529	+		CCNA_01047	0.11	-0.8
1,142,537	-		CCNA_01047	0.11	-0.2
1,142,537	-		CCNA_01047	0.11	-1.4
1,142,553	+		CCNA_01047	0.12	-0.4
1,142,553	+		CCNA_01047	0.12	-0.4
1,142,553	+		CCNA_01047	0.12	-1.4
1,142,561	-		CCNA_01047	0.12	-0.8
1,142,561	-		CCNA_01047	0.12	-0.8
1,142,578	+		CCNA_01047	0.13	+1.5
1,142,586	-		CCNA_01047	0.13	-0.9
1,142,629	-		CCNA_01047	0.14	-1.3
1,142,649	+		CCNA_01047	0.15	-1.6
1,142,720	+		CCNA_01047	0.18	+0.1
1,142,738	-		CCNA_01047	0.18	+0.5
1,142,754	+		CCNA_01047	0.19	-2.2
1,142,764	-		CCNA_01047	0.19	-0.9
1,142,768	+		CCNA_01047	0.20	+0.0
1,142,817	+		CCNA_01047	0.21	-0.7
1,142,833	-		CCNA_01047	0.22	-0.2
1,142,890	-		CCNA_01047	0.24	-0.3
1,142,923	-		CCNA_01047	0.25	-0.0
1,142,989	+		CCNA_01047	0.28	-1.2
1,143,010	-		CCNA_01047	0.29	-0.5
1,143,010	-		CCNA_01047	0.29	+0.3
1,143,010	-		CCNA_01047	0.29	-0.4
1,143,041	+		CCNA_01047	0.30	-0.8
1,143,051	-		CCNA_01047	0.30	-0.4
1,143,066	-		CCNA_01047	0.31	-1.1
1,143,070	-		CCNA_01047	0.31	-1.2
1,143,091	-		CCNA_01047	0.31	-0.5
1,143,132	+		CCNA_01047	0.33	-1.9
1,143,136	+		CCNA_01047	0.33	-0.1
1,143,136	+		CCNA_01047	0.33	-0.8
1,143,169	+		CCNA_01047	0.34	-0.3
1,143,169	+		CCNA_01047	0.34	+0.7
1,143,177	-		CCNA_01047	0.35	-1.3
1,143,187	-		CCNA_01047	0.35	-1.1
1,143,187	-		CCNA_01047	0.35	-0.4
1,143,224	+		CCNA_01047	0.36	-1.5
1,143,229	+		CCNA_01047	0.37	-1.4
1,143,237	-		CCNA_01047	0.37	-2.6
1,143,250	+		CCNA_01047	0.37	-0.8
1,143,264	-		CCNA_01047	0.38	-2.3
1,143,293	+		CCNA_01047	0.39	-0.4
1,143,316	-		CCNA_01047	0.40	-1.2
1,143,318	-		CCNA_01047	0.40	-0.3
1,143,339	+		CCNA_01047	0.41	-0.8
1,143,340	-		CCNA_01047	0.41	-2.9
1,143,363	-		CCNA_01047	0.42	-2.0
1,143,365	+		CCNA_01047	0.42	-0.3
1,143,377	+		CCNA_01047	0.42	-0.6
1,143,381	+		CCNA_01047	0.42	-1.8
1,143,385	-		CCNA_01047	0.42	-1.6
1,143,387	+		CCNA_01047	0.42	-0.9
1,143,388	-		CCNA_01047	0.42	-0.3
1,143,440	+		CCNA_01047	0.44	+0.2
1,143,450	-		CCNA_01047	0.45	+0.1
1,143,450	-		CCNA_01047	0.45	+0.4
1,143,450	-		CCNA_01047	0.45	-0.3
1,143,450	-		CCNA_01047	0.45	-1.2
1,143,490	+		CCNA_01047	0.46	+0.2
1,143,498	-		CCNA_01047	0.46	-1.0
1,143,498	-		CCNA_01047	0.46	-1.1
1,143,498	-		CCNA_01047	0.46	-0.8
1,143,505	+		CCNA_01047	0.47	+0.5
1,143,513	-		CCNA_01047	0.47	-1.5
1,143,523	-		CCNA_01047	0.47	-1.5
1,143,533	+		CCNA_01047	0.48	-0.8
1,143,538	+		CCNA_01047	0.48	-0.2
1,143,551	-		CCNA_01047	0.48	+0.9
1,143,553	+		CCNA_01047	0.49	-1.3
1,143,561	-		CCNA_01047	0.49	-1.5
1,143,561	-		CCNA_01047	0.49	-0.0
1,143,561	-		CCNA_01047	0.49	+0.2
1,143,568	+		CCNA_01047	0.49	-0.3
1,143,585	-		CCNA_01047	0.50	+0.2
1,143,596	+		CCNA_01047	0.50	-1.5
1,143,653	+		CCNA_01047	0.52	-1.8
1,143,669	+		CCNA_01047	0.53	-3.0
1,143,690	+		CCNA_01047	0.54	+0.2
1,143,697	-		CCNA_01047	0.54	-0.8
1,143,731	+		CCNA_01047	0.55	-0.7
1,143,773	-		CCNA_01047	0.57	-0.2
1,143,775	+		CCNA_01047	0.57	-1.2
1,143,783	-		CCNA_01047	0.57	-2.1
1,143,787	+		CCNA_01047	0.57	+0.3
1,143,787	+		CCNA_01047	0.57	-0.4
1,143,829	-		CCNA_01047	0.59	+0.2
1,143,832	+		CCNA_01047	0.59	+0.2
1,143,832	+		CCNA_01047	0.59	-0.5
1,143,856	+		CCNA_01047	0.60	-1.1
1,143,882	-		CCNA_01047	0.61	-1.8
1,143,882	-		CCNA_01047	0.61	-0.3
1,143,887	+		CCNA_01047	0.61	+0.2
1,143,887	+		CCNA_01047	0.61	-0.1
1,143,906	+		CCNA_01047	0.62	-1.5
1,143,909	+		CCNA_01047	0.62	-2.4
1,143,926	+		CCNA_01047	0.62	-0.2
1,143,937	+		CCNA_01047	0.63	-0.4
1,143,937	+		CCNA_01047	0.63	+0.0
1,143,945	-		CCNA_01047	0.63	-0.3
1,143,945	-		CCNA_01047	0.63	-0.1
1,143,983	+		CCNA_01047	0.64	-0.4
1,143,983	+		CCNA_01047	0.64	+0.7
1,143,983	+		CCNA_01047	0.64	-2.8
1,143,984	-		CCNA_01047	0.64	-1.8
1,143,991	-		CCNA_01047	0.65	+0.6
1,143,991	-		CCNA_01047	0.65	+0.5
1,143,992	+		CCNA_01047	0.65	-0.8
1,144,071	+		CCNA_01047	0.68	+1.2
1,144,097	-		CCNA_01047	0.69	-0.2
1,144,122	-		CCNA_01047	0.70	-1.7
1,144,139	-		CCNA_01047	0.70	-0.6
1,144,180	-		CCNA_01047	0.72	-1.5
1,144,187	-		CCNA_01047	0.72	+0.9
1,144,210	+		CCNA_01047	0.73	-2.0
1,144,210	-		CCNA_01047	0.73	-0.3
1,144,217	+		CCNA_01047	0.73	-0.7
1,144,218	-		CCNA_01047	0.73	+0.1
1,144,230	-		CCNA_01047	0.73	+1.5
1,144,230	-		CCNA_01047	0.73	-1.2
1,144,243	-		CCNA_01047	0.74	-0.3
1,144,265	-		CCNA_01047	0.75	-2.4
1,144,313	+		CCNA_01047	0.77	-1.1
1,144,316	-		CCNA_01047	0.77	-1.4
1,144,321	-		CCNA_01047	0.77	+0.6
1,144,330	+		CCNA_01047	0.77	-0.9
1,144,330	+		CCNA_01047	0.77	-0.6
1,144,330	+		CCNA_01047	0.77	-0.5
1,144,338	+		CCNA_01047	0.77	-0.2
1,144,338	+		CCNA_01047	0.77	-0.5
1,144,338	-		CCNA_01047	0.77	-0.7
1,144,346	-		CCNA_01047	0.78	-1.3
1,144,361	+		CCNA_01047	0.78	-0.2
1,144,369	-		CCNA_01047	0.79	+0.5
1,144,391	+		CCNA_01047	0.79	-1.9
1,144,391	+		CCNA_01047	0.79	-0.0
1,144,391	+		CCNA_01047	0.79	-0.0
1,144,421	+		CCNA_01047	0.81	-0.6
1,144,429	-		CCNA_01047	0.81	-1.5
1,144,432	+		CCNA_01047	0.81	+0.5
1,144,432	+		CCNA_01047	0.81	+0.1
1,144,432	+		CCNA_01047	0.81	-0.7
1,144,440	-		CCNA_01047	0.81	-1.2
1,144,466	+		CCNA_01047	0.82	+0.2
1,144,466	+		CCNA_01047	0.82	-0.1
1,144,466	+		CCNA_01047	0.82	-1.8
1,144,466	+		CCNA_01047	0.82	+0.9
1,144,466	+		CCNA_01047	0.82	-0.6
1,144,474	-		CCNA_01047	0.82	-1.5
1,144,474	-		CCNA_01047	0.82	-2.7
1,144,512	+		CCNA_01047	0.84	+1.3
1,144,535	+		CCNA_01047	0.85	-0.2
1,144,536	+		CCNA_01047	0.85	-0.3
1,144,544	-		CCNA_01047	0.85	-1.4
1,144,545	+		CCNA_01047	0.85	-0.7
1,144,553	-		CCNA_01047	0.85	+1.3
1,144,561	+		CCNA_01047	0.86	-0.7
1,144,593	+		CCNA_01047	0.87	-0.1
1,144,598	+		CCNA_01047	0.87	-0.0
1,144,598	+		CCNA_01047	0.87	+1.2
1,144,606	-		CCNA_01047	0.87	-1.1
1,144,616	-		CCNA_01047	0.88	-0.6
1,144,619	+		CCNA_01047	0.88	-1.4
1,144,627	+		CCNA_01047	0.88	-1.2
1,144,627	-		CCNA_01047	0.88	-1.2
1,144,627	-		CCNA_01047	0.88	-0.0
1,144,686	-				+0.8
1,144,699	+				-2.2
1,144,707	-				-0.7
1,144,710	+				-0.8
1,144,718	-				+0.3
1,144,721	+				-0.8
1,144,721	+				-1.8
1,144,729	-				+2.3
1,144,729	-				-2.5
1,144,733	+				+0.4
1,144,734	-				-1.0
1,144,739	+				-0.6
1,144,778	-				+0.2
1,144,804	+				-0.7
1,144,817	+				+0.3
1,144,841	+				-1.3
1,144,854	-				+0.5
1,144,864	+				+0.2
1,144,934	+				+0.4
1,144,980	-				-2.3
1,145,041	+				-0.0
1,145,078	+				-1.9
1,145,081	-				-0.8
1,145,086	-				-0.3
1,145,157	+		CCNA_01048	0.19	-1.8
1,145,160	-		CCNA_01048	0.20	+0.5
1,145,178	-		CCNA_01048	0.27	-2.6
1,145,178	-		CCNA_01048	0.27	+0.0
1,145,178	-		CCNA_01048	0.27	+0.7
1,145,234	+		CCNA_01048	0.48	-0.6
1,145,235	+		CCNA_01048	0.49	-0.3
1,145,235	+		CCNA_01048	0.49	-0.6
1,145,240	+		CCNA_01048	0.51	+0.1
1,145,273	+		CCNA_01048	0.63	+0.5
1,145,273	+		CCNA_01048	0.63	+0.2
1,145,273	+		CCNA_01048	0.63	+0.7
1,145,273	+		CCNA_01048	0.63	-0.3
1,145,273	+		CCNA_01048	0.63	-2.4
1,145,273	+		CCNA_01048	0.63	-3.1
1,145,273	+		CCNA_01048	0.63	-0.1
1,145,273	+		CCNA_01048	0.63	-0.5
1,145,281	-		CCNA_01048	0.66	+0.5
1,145,281	-		CCNA_01048	0.66	+0.2
1,145,281	-		CCNA_01048	0.66	+0.2
1,145,281	-		CCNA_01048	0.66	+0.2
1,145,281	-		CCNA_01048	0.66	+0.6
1,145,281	-		CCNA_01048	0.66	-0.6
1,145,281	-		CCNA_01048	0.66	+0.5
1,145,281	-		CCNA_01048	0.66	+0.8
1,145,281	-		CCNA_01048	0.66	+1.0
1,145,281	-		CCNA_01048	0.66	+0.4
1,145,281	-		CCNA_01048	0.66	+0.6
1,145,305	+		CCNA_01048	0.75	+0.6
1,145,332	+		CCNA_01048	0.86	+0.6
1,145,332	+		CCNA_01048	0.86	-0.3
1,145,332	+		CCNA_01048	0.86	+1.1
1,145,332	+		CCNA_01048	0.86	-0.0
1,145,340	-		CCNA_01048	0.89	-0.6
1,145,340	-		CCNA_01048	0.89	-0.5
1,145,340	-		CCNA_01048	0.89	+0.8
1,145,340	-		CCNA_01048	0.89	+0.0
1,145,340	-		CCNA_01048	0.89	-0.5
1,145,340	-		CCNA_01048	0.89	-0.8
1,145,387	+				-0.7
1,145,414	-				-1.5
1,145,419	-				-0.7
1,145,426	+				+1.6
1,145,438	+				-1.2
1,145,450	+				+0.8
1,145,473	-		CCNA_03945	0.12	-2.1
1,145,483	+		CCNA_03945	0.19	+0.3
1,145,488	+		CCNA_03945	0.22	-0.8
1,145,490	-		CCNA_03945	0.24	+0.6
1,145,498	+		CCNA_03945	0.29	+0.6
1,145,516	-		CCNA_03945	0.41	-2.0
1,145,581	+		CCNA_03945	0.83	-0.2
1,145,607	-				-0.7
1,145,669	-				+0.5
1,145,674	+				-0.1
1,145,674	+				+0.5
1,145,705	-				-0.6
1,145,715	-				-1.6
1,145,722	-		CCNA_01049	0.10	+0.4
1,145,722	-		CCNA_01049	0.10	+0.8
1,145,722	-		CCNA_01049	0.10	+0.2
1,145,772	-		CCNA_01049	0.21	-0.7
1,145,775	+		CCNA_01049	0.21	+0.4
1,145,789	+		CCNA_01049	0.24	+0.4
1,145,797	-		CCNA_01049	0.26	+0.5
1,145,797	-		CCNA_01049	0.26	-0.6
1,145,823	+		CCNA_01049	0.31	+0.6
1,145,842	-		CCNA_01049	0.35	-0.2
1,145,876	+		CCNA_01049	0.42	+0.2
1,145,879	-		CCNA_01049	0.43	-0.5
1,145,879	-		CCNA_01049	0.43	-1.2
1,145,891	+		CCNA_01049	0.45	+0.9
1,145,899	-		CCNA_01049	0.47	-1.5
1,145,939	+		CCNA_01049	0.55	-0.7
1,145,939	+		CCNA_01049	0.55	-0.4
1,145,939	+		CCNA_01049	0.55	+1.5
1,145,941	+		CCNA_01049	0.56	+0.4
1,145,944	+		CCNA_01049	0.56	+0.2
1,145,947	-		CCNA_01049	0.57	-1.8
1,145,947	-		CCNA_01049	0.57	-0.6