Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00918 and CCNA_00919 are separated by 37 nucleotides CCNA_00919 and CCNA_00920 overlap by 4 nucleotides CCNA_00920 and CCNA_00921 are separated by 167 nucleotides
CCNA_00918: CCNA_00918 - peptide release factor-glutamine N5-methyltransferase, at 995,336 to 996,205
_00918
CCNA_00919: CCNA_00919 - hypothetical protein, at 996,243 to 996,467
_00919
CCNA_00920: CCNA_00920 - hypothetical protein, at 996,464 to 997,576
_00920
CCNA_00921: CCNA_00921 - zinc metalloprotease, at 997,744 to 998,499
_00921
Position (kb)
996
997
998 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 996.178 kb on + strand at 996.218 kb on + strand at 996.284 kb on + strand, within CCNA_00919 at 996.352 kb on + strand, within CCNA_00919 at 996.386 kb on + strand, within CCNA_00919 at 996.422 kb on - strand, within CCNA_00919 at 996.432 kb on + strand, within CCNA_00919 at 996.435 kb on - strand, within CCNA_00919 at 996.450 kb on + strand at 996.751 kb on + strand, within CCNA_00920 at 996.760 kb on + strand, within CCNA_00920 at 996.816 kb on - strand, within CCNA_00920 at 997.306 kb on + strand, within CCNA_00920 at 997.440 kb on + strand, within CCNA_00920 at 997.489 kb on + strand at 997.532 kb on - strand at 997.570 kb on + strand at 997.659 kb on - strand at 997.701 kb on + strand at 997.740 kb on + strand at 997.740 kb on + strand at 997.748 kb on - strand at 997.748 kb on - strand at 997.749 kb on - strand at 997.764 kb on + strand at 997.785 kb on + strand at 997.795 kb on + strand at 997.795 kb on - strand at 997.808 kb on + strand at 997.821 kb on + strand, within CCNA_00921 at 997.834 kb on - strand, within CCNA_00921 at 997.844 kb on - strand, within CCNA_00921 at 997.844 kb on - strand, within CCNA_00921 at 997.845 kb on - strand, within CCNA_00921 at 997.876 kb on + strand, within CCNA_00921 at 997.881 kb on + strand, within CCNA_00921 at 997.881 kb on + strand, within CCNA_00921 at 997.889 kb on - strand, within CCNA_00921 at 997.890 kb on - strand, within CCNA_00921 at 997.895 kb on - strand, within CCNA_00921 at 997.926 kb on + strand, within CCNA_00921 at 997.941 kb on + strand, within CCNA_00921 at 997.955 kb on - strand, within CCNA_00921 at 998.060 kb on + strand, within CCNA_00921 at 998.064 kb on - strand, within CCNA_00921 at 998.137 kb on + strand, within CCNA_00921 at 998.140 kb on - strand, within CCNA_00921 at 998.140 kb on - strand, within CCNA_00921 at 998.188 kb on + strand, within CCNA_00921 at 998.305 kb on + strand, within CCNA_00921 at 998.396 kb on + strand, within CCNA_00921 at 998.437 kb on - strand at 998.442 kb on + strand at 998.442 kb on - strand at 998.450 kb on - strand at 998.495 kb on + strand at 998.545 kb on - strand at 998.556 kb on + strand at 998.556 kb on + strand at 998.564 kb on - strand at 998.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 996,178 + +2.8 996,218 + +0.6 996,284 + CCNA_00919 0.18 -0.0 996,352 + CCNA_00919 0.48 +0.9 996,386 + CCNA_00919 0.64 +1.0 996,422 - CCNA_00919 0.80 +1.5 996,432 + CCNA_00919 0.84 +0.2 996,435 - CCNA_00919 0.85 -0.3 996,450 + +0.5 996,751 + CCNA_00920 0.26 -0.1 996,760 + CCNA_00920 0.27 -2.5 996,816 - CCNA_00920 0.32 -0.7 997,306 + CCNA_00920 0.76 -1.4 997,440 + CCNA_00920 0.88 +0.4 997,489 + -0.1 997,532 - +0.5 997,570 + +0.4 997,659 - -0.3 997,701 + -0.0 997,740 + -0.4 997,740 + +0.7 997,748 - -1.0 997,748 - +0.0 997,749 - -0.4 997,764 + +1.2 997,785 + -0.0 997,795 + +0.5 997,795 - -0.5 997,808 + +2.0 997,821 + CCNA_00921 0.10 +0.9 997,834 - CCNA_00921 0.12 +0.5 997,844 - CCNA_00921 0.13 +0.3 997,844 - CCNA_00921 0.13 +0.4 997,845 - CCNA_00921 0.13 +1.1 997,876 + CCNA_00921 0.17 -0.3 997,881 + CCNA_00921 0.18 +0.5 997,881 + CCNA_00921 0.18 +1.2 997,889 - CCNA_00921 0.19 -1.4 997,890 - CCNA_00921 0.19 +0.3 997,895 - CCNA_00921 0.20 -1.4 997,926 + CCNA_00921 0.24 -1.1 997,941 + CCNA_00921 0.26 -1.1 997,955 - CCNA_00921 0.28 -0.7 998,060 + CCNA_00921 0.42 -0.3 998,064 - CCNA_00921 0.42 +0.6 998,137 + CCNA_00921 0.52 +0.4 998,140 - CCNA_00921 0.52 -1.5 998,140 - CCNA_00921 0.52 -0.3 998,188 + CCNA_00921 0.59 -0.2 998,305 + CCNA_00921 0.74 -0.4 998,396 + CCNA_00921 0.86 -0.0 998,437 - -0.9 998,442 + +0.3 998,442 - +0.5 998,450 - +0.7 998,495 + +0.5 998,545 - -1.6 998,556 + +1.0 998,556 + +0.4 998,564 - -1.2 998,564 - -0.2
Or see this region's nucleotide sequence