Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00920

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00918 and CCNA_00919 are separated by 37 nucleotidesCCNA_00919 and CCNA_00920 overlap by 4 nucleotidesCCNA_00920 and CCNA_00921 are separated by 167 nucleotides CCNA_00918: CCNA_00918 - peptide release factor-glutamine N5-methyltransferase, at 995,336 to 996,205 _00918 CCNA_00919: CCNA_00919 - hypothetical protein, at 996,243 to 996,467 _00919 CCNA_00920: CCNA_00920 - hypothetical protein, at 996,464 to 997,576 _00920 CCNA_00921: CCNA_00921 - zinc metalloprotease, at 997,744 to 998,499 _00921 Position (kb) 996 997 998Strain fitness (log2 ratio) -2 -1 0 1 2 3at 996.178 kb on + strandat 996.218 kb on + strandat 996.284 kb on + strand, within CCNA_00919at 996.352 kb on + strand, within CCNA_00919at 996.386 kb on + strand, within CCNA_00919at 996.422 kb on - strand, within CCNA_00919at 996.432 kb on + strand, within CCNA_00919at 996.435 kb on - strand, within CCNA_00919at 996.450 kb on + strandat 996.751 kb on + strand, within CCNA_00920at 996.760 kb on + strand, within CCNA_00920at 996.816 kb on - strand, within CCNA_00920at 997.306 kb on + strand, within CCNA_00920at 997.440 kb on + strand, within CCNA_00920at 997.489 kb on + strandat 997.532 kb on - strandat 997.570 kb on + strandat 997.659 kb on - strandat 997.701 kb on + strandat 997.740 kb on + strandat 997.740 kb on + strandat 997.748 kb on - strandat 997.748 kb on - strandat 997.749 kb on - strandat 997.764 kb on + strandat 997.785 kb on + strandat 997.795 kb on + strandat 997.795 kb on - strandat 997.808 kb on + strandat 997.821 kb on + strand, within CCNA_00921at 997.834 kb on - strand, within CCNA_00921at 997.844 kb on - strand, within CCNA_00921at 997.844 kb on - strand, within CCNA_00921at 997.845 kb on - strand, within CCNA_00921at 997.876 kb on + strand, within CCNA_00921at 997.881 kb on + strand, within CCNA_00921at 997.881 kb on + strand, within CCNA_00921at 997.889 kb on - strand, within CCNA_00921at 997.890 kb on - strand, within CCNA_00921at 997.895 kb on - strand, within CCNA_00921at 997.926 kb on + strand, within CCNA_00921at 997.941 kb on + strand, within CCNA_00921at 997.955 kb on - strand, within CCNA_00921at 998.060 kb on + strand, within CCNA_00921at 998.064 kb on - strand, within CCNA_00921at 998.137 kb on + strand, within CCNA_00921at 998.140 kb on - strand, within CCNA_00921at 998.140 kb on - strand, within CCNA_00921at 998.188 kb on + strand, within CCNA_00921at 998.305 kb on + strand, within CCNA_00921at 998.396 kb on + strand, within CCNA_00921at 998.437 kb on - strandat 998.442 kb on + strandat 998.442 kb on - strandat 998.450 kb on - strandat 998.495 kb on + strandat 998.545 kb on - strandat 998.556 kb on + strandat 998.556 kb on + strandat 998.564 kb on - strandat 998.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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996,178 + +2.8
996,218 + +0.6
996,284 + CCNA_00919 0.18 -0.0
996,352 + CCNA_00919 0.48 +0.9
996,386 + CCNA_00919 0.64 +1.0
996,422 - CCNA_00919 0.80 +1.5
996,432 + CCNA_00919 0.84 +0.2
996,435 - CCNA_00919 0.85 -0.3
996,450 + +0.5
996,751 + CCNA_00920 0.26 -0.1
996,760 + CCNA_00920 0.27 -2.5
996,816 - CCNA_00920 0.32 -0.7
997,306 + CCNA_00920 0.76 -1.4
997,440 + CCNA_00920 0.88 +0.4
997,489 + -0.1
997,532 - +0.5
997,570 + +0.4
997,659 - -0.3
997,701 + -0.0
997,740 + -0.4
997,740 + +0.7
997,748 - -1.0
997,748 - +0.0
997,749 - -0.4
997,764 + +1.2
997,785 + -0.0
997,795 + +0.5
997,795 - -0.5
997,808 + +2.0
997,821 + CCNA_00921 0.10 +0.9
997,834 - CCNA_00921 0.12 +0.5
997,844 - CCNA_00921 0.13 +0.3
997,844 - CCNA_00921 0.13 +0.4
997,845 - CCNA_00921 0.13 +1.1
997,876 + CCNA_00921 0.17 -0.3
997,881 + CCNA_00921 0.18 +0.5
997,881 + CCNA_00921 0.18 +1.2
997,889 - CCNA_00921 0.19 -1.4
997,890 - CCNA_00921 0.19 +0.3
997,895 - CCNA_00921 0.20 -1.4
997,926 + CCNA_00921 0.24 -1.1
997,941 + CCNA_00921 0.26 -1.1
997,955 - CCNA_00921 0.28 -0.7
998,060 + CCNA_00921 0.42 -0.3
998,064 - CCNA_00921 0.42 +0.6
998,137 + CCNA_00921 0.52 +0.4
998,140 - CCNA_00921 0.52 -1.5
998,140 - CCNA_00921 0.52 -0.3
998,188 + CCNA_00921 0.59 -0.2
998,305 + CCNA_00921 0.74 -0.4
998,396 + CCNA_00921 0.86 -0.0
998,437 - -0.9
998,442 + +0.3
998,442 - +0.5
998,450 - +0.7
998,495 + +0.5
998,545 - -1.6
998,556 + +1.0
998,556 + +0.4
998,564 - -1.2
998,564 - -0.2

Or see this region's nucleotide sequence