Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00816

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00815 and CCNA_00816 overlap by 4 nucleotidesCCNA_00816 and CCNA_00817 are separated by 43 nucleotides CCNA_00815: CCNA_00815 - lignostilbene-alpha,beta-dioxygenase, at 878,273 to 879,724 _00815 CCNA_00816: CCNA_00816 - hypothetical protein, at 879,721 to 879,912 _00816 CCNA_00817: CCNA_00817 - L-sorbosone dehydrogenase, at 879,956 to 881,284 _00817 Position (kb) 879 880Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 878.721 kb on + strand, within CCNA_00815at 878.731 kb on + strand, within CCNA_00815at 878.739 kb on - strand, within CCNA_00815at 878.750 kb on - strand, within CCNA_00815at 878.750 kb on - strand, within CCNA_00815at 878.756 kb on - strand, within CCNA_00815at 878.767 kb on - strand, within CCNA_00815at 878.772 kb on + strand, within CCNA_00815at 878.813 kb on + strand, within CCNA_00815at 878.832 kb on - strand, within CCNA_00815at 878.845 kb on + strand, within CCNA_00815at 878.845 kb on + strand, within CCNA_00815at 878.853 kb on - strand, within CCNA_00815at 878.853 kb on - strand, within CCNA_00815at 878.868 kb on - strand, within CCNA_00815at 878.917 kb on + strand, within CCNA_00815at 878.925 kb on - strand, within CCNA_00815at 878.925 kb on - strand, within CCNA_00815at 878.937 kb on + strand, within CCNA_00815at 878.939 kb on - strand, within CCNA_00815at 878.945 kb on - strand, within CCNA_00815at 878.945 kb on - strand, within CCNA_00815at 878.963 kb on - strand, within CCNA_00815at 879.018 kb on - strand, within CCNA_00815at 879.072 kb on + strand, within CCNA_00815at 879.076 kb on + strand, within CCNA_00815at 879.081 kb on + strand, within CCNA_00815at 879.081 kb on + strand, within CCNA_00815at 879.081 kb on + strand, within CCNA_00815at 879.081 kb on + strand, within CCNA_00815at 879.089 kb on - strand, within CCNA_00815at 879.094 kb on + strand, within CCNA_00815at 879.116 kb on - strand, within CCNA_00815at 879.132 kb on + strand, within CCNA_00815at 879.133 kb on + strand, within CCNA_00815at 879.133 kb on - strand, within CCNA_00815at 879.140 kb on - strand, within CCNA_00815at 879.140 kb on - strand, within CCNA_00815at 879.142 kb on + strand, within CCNA_00815at 879.170 kb on - strand, within CCNA_00815at 879.177 kb on + strand, within CCNA_00815at 879.177 kb on + strand, within CCNA_00815at 879.177 kb on + strand, within CCNA_00815at 879.177 kb on + strand, within CCNA_00815at 879.177 kb on + strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.187 kb on + strand, within CCNA_00815at 879.200 kb on + strand, within CCNA_00815at 879.200 kb on + strand, within CCNA_00815at 879.200 kb on + strand, within CCNA_00815at 879.208 kb on - strand, within CCNA_00815at 879.272 kb on - strand, within CCNA_00815at 879.274 kb on + strand, within CCNA_00815at 879.274 kb on + strand, within CCNA_00815at 879.274 kb on + strand, within CCNA_00815at 879.282 kb on - strand, within CCNA_00815at 879.329 kb on + strand, within CCNA_00815at 879.337 kb on - strand, within CCNA_00815at 879.340 kb on - strand, within CCNA_00815at 879.371 kb on - strand, within CCNA_00815at 879.373 kb on + strand, within CCNA_00815at 879.373 kb on + strand, within CCNA_00815at 879.373 kb on + strand, within CCNA_00815at 879.381 kb on - strand, within CCNA_00815at 879.390 kb on + strand, within CCNA_00815at 879.396 kb on + strand, within CCNA_00815at 879.406 kb on - strand, within CCNA_00815at 879.453 kb on - strand, within CCNA_00815at 879.464 kb on + strand, within CCNA_00815at 879.551 kb on - strand, within CCNA_00815at 879.558 kb on + strand, within CCNA_00815at 879.568 kb on + strand, within CCNA_00815at 879.568 kb on + strand, within CCNA_00815at 879.576 kb on - strand, within CCNA_00815at 879.576 kb on - strand, within CCNA_00815at 879.576 kb on - strand, within CCNA_00815at 879.576 kb on - strand, within CCNA_00815at 879.602 kb on + strandat 879.610 kb on + strandat 879.618 kb on - strandat 879.624 kb on + strandat 879.632 kb on - strandat 879.632 kb on - strandat 879.633 kb on + strandat 879.638 kb on + strandat 879.638 kb on - strandat 879.682 kb on + strandat 879.690 kb on - strandat 879.717 kb on + strandat 879.851 kb on + strand, within CCNA_00816at 879.851 kb on + strand, within CCNA_00816at 879.853 kb on + strand, within CCNA_00816at 879.882 kb on + strand, within CCNA_00816at 879.890 kb on - strand, within CCNA_00816at 879.896 kb on + strandat 879.942 kb on + strandat 879.942 kb on + strandat 879.948 kb on + strandat 879.950 kb on - strandat 879.954 kb on + strandat 879.956 kb on - strandat 879.956 kb on - strandat 879.956 kb on - strandat 880.002 kb on + strandat 880.049 kb on + strandat 880.049 kb on + strandat 880.049 kb on + strandat 880.049 kb on + strandat 880.049 kb on + strandat 880.049 kb on + strandat 880.049 kb on + strandat 880.049 kb on + strandat 880.056 kb on + strandat 880.057 kb on - strandat 880.057 kb on - strandat 880.057 kb on - strandat 880.057 kb on - strandat 880.058 kb on - strandat 880.073 kb on + strandat 880.099 kb on - strand, within CCNA_00817at 880.128 kb on + strand, within CCNA_00817at 880.149 kb on - strand, within CCNA_00817at 880.160 kb on - strand, within CCNA_00817at 880.265 kb on + strand, within CCNA_00817at 880.265 kb on + strand, within CCNA_00817at 880.265 kb on - strand, within CCNA_00817at 880.272 kb on + strand, within CCNA_00817at 880.278 kb on - strand, within CCNA_00817at 880.303 kb on + strand, within CCNA_00817at 880.303 kb on + strand, within CCNA_00817at 880.311 kb on + strand, within CCNA_00817at 880.323 kb on + strand, within CCNA_00817at 880.336 kb on + strand, within CCNA_00817at 880.358 kb on + strand, within CCNA_00817at 880.370 kb on + strand, within CCNA_00817at 880.391 kb on + strand, within CCNA_00817at 880.396 kb on + strand, within CCNA_00817at 880.419 kb on + strand, within CCNA_00817at 880.427 kb on - strand, within CCNA_00817at 880.452 kb on + strand, within CCNA_00817at 880.452 kb on + strand, within CCNA_00817at 880.452 kb on + strand, within CCNA_00817at 880.452 kb on + strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.484 kb on - strand, within CCNA_00817at 880.484 kb on - strand, within CCNA_00817at 880.494 kb on + strand, within CCNA_00817at 880.494 kb on + strand, within CCNA_00817at 880.499 kb on + strand, within CCNA_00817at 880.502 kb on - strand, within CCNA_00817at 880.553 kb on - strand, within CCNA_00817at 880.565 kb on + strand, within CCNA_00817at 880.612 kb on - strand, within CCNA_00817at 880.620 kb on + strand, within CCNA_00817at 880.620 kb on + strand, within CCNA_00817at 880.620 kb on + strand, within CCNA_00817at 880.628 kb on - strand, within CCNA_00817at 880.635 kb on - strand, within CCNA_00817at 880.635 kb on - strand, within CCNA_00817at 880.670 kb on - strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.748 kb on - strand, within CCNA_00817at 880.748 kb on - strand, within CCNA_00817at 880.785 kb on + strand, within CCNA_00817at 880.785 kb on - strand, within CCNA_00817at 880.793 kb on + strand, within CCNA_00817at 880.793 kb on + strand, within CCNA_00817at 880.798 kb on + strand, within CCNA_00817at 880.801 kb on - strand, within CCNA_00817at 880.806 kb on - strand, within CCNA_00817at 880.825 kb on - strand, within CCNA_00817at 880.831 kb on + strand, within CCNA_00817at 880.847 kb on - strand, within CCNA_00817at 880.847 kb on - strand, within CCNA_00817at 880.847 kb on - strand, within CCNA_00817at 880.886 kb on + strand, within CCNA_00817at 880.909 kb on - strand, within CCNA_00817

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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878,721 + CCNA_00815 0.31 +0.1
878,731 + CCNA_00815 0.32 +0.3
878,739 - CCNA_00815 0.32 +0.5
878,750 - CCNA_00815 0.33 -1.4
878,750 - CCNA_00815 0.33 +0.1
878,756 - CCNA_00815 0.33 -0.4
878,767 - CCNA_00815 0.34 -0.1
878,772 + CCNA_00815 0.34 -0.1
878,813 + CCNA_00815 0.37 -0.6
878,832 - CCNA_00815 0.38 +0.0
878,845 + CCNA_00815 0.39 -2.2
878,845 + CCNA_00815 0.39 -0.6
878,853 - CCNA_00815 0.40 +0.7
878,853 - CCNA_00815 0.40 -0.4
878,868 - CCNA_00815 0.41 -0.8
878,917 + CCNA_00815 0.44 -1.0
878,925 - CCNA_00815 0.45 -1.4
878,925 - CCNA_00815 0.45 -1.1
878,937 + CCNA_00815 0.46 -0.4
878,939 - CCNA_00815 0.46 -0.3
878,945 - CCNA_00815 0.46 -0.3
878,945 - CCNA_00815 0.46 -1.6
878,963 - CCNA_00815 0.48 +0.4
879,018 - CCNA_00815 0.51 +0.6
879,072 + CCNA_00815 0.55 -0.7
879,076 + CCNA_00815 0.55 +0.2
879,081 + CCNA_00815 0.56 -1.2
879,081 + CCNA_00815 0.56 +0.9
879,081 + CCNA_00815 0.56 +0.1
879,081 + CCNA_00815 0.56 -1.8
879,089 - CCNA_00815 0.56 +0.5
879,094 + CCNA_00815 0.57 +1.0
879,116 - CCNA_00815 0.58 -0.9
879,132 + CCNA_00815 0.59 +0.4
879,133 + CCNA_00815 0.59 -0.4
879,133 - CCNA_00815 0.59 -0.1
879,140 - CCNA_00815 0.60 -0.9
879,140 - CCNA_00815 0.60 +0.3
879,142 + CCNA_00815 0.60 -1.7
879,170 - CCNA_00815 0.62 +0.2
879,177 + CCNA_00815 0.62 +0.5
879,177 + CCNA_00815 0.62 -2.9
879,177 + CCNA_00815 0.62 -0.7
879,177 + CCNA_00815 0.62 -0.7
879,177 + CCNA_00815 0.62 -0.6
879,185 - CCNA_00815 0.63 -0.4
879,185 - CCNA_00815 0.63 -0.4
879,185 - CCNA_00815 0.63 -1.2
879,185 - CCNA_00815 0.63 -0.5
879,185 - CCNA_00815 0.63 +0.5
879,185 - CCNA_00815 0.63 +0.9
879,185 - CCNA_00815 0.63 +0.2
879,187 + CCNA_00815 0.63 -3.2
879,200 + CCNA_00815 0.64 -0.6
879,200 + CCNA_00815 0.64 -0.7
879,200 + CCNA_00815 0.64 -1.0
879,208 - CCNA_00815 0.64 -0.3
879,272 - CCNA_00815 0.69 +0.2
879,274 + CCNA_00815 0.69 -0.8
879,274 + CCNA_00815 0.69 -1.0
879,274 + CCNA_00815 0.69 -1.6
879,282 - CCNA_00815 0.69 +0.0
879,329 + CCNA_00815 0.73 -0.7
879,337 - CCNA_00815 0.73 +0.1
879,340 - CCNA_00815 0.73 +0.9
879,371 - CCNA_00815 0.76 -3.2
879,373 + CCNA_00815 0.76 -0.5
879,373 + CCNA_00815 0.76 -0.4
879,373 + CCNA_00815 0.76 -0.9
879,381 - CCNA_00815 0.76 -0.1
879,390 + CCNA_00815 0.77 -0.1
879,396 + CCNA_00815 0.77 -0.1
879,406 - CCNA_00815 0.78 +0.1
879,453 - CCNA_00815 0.81 -0.2
879,464 + CCNA_00815 0.82 -0.4
879,551 - CCNA_00815 0.88 +0.6
879,558 + CCNA_00815 0.88 +0.4
879,568 + CCNA_00815 0.89 +0.1
879,568 + CCNA_00815 0.89 -0.8
879,576 - CCNA_00815 0.90 -0.2
879,576 - CCNA_00815 0.90 -0.7
879,576 - CCNA_00815 0.90 -1.1
879,576 - CCNA_00815 0.90 +0.2
879,602 + -1.2
879,610 + -0.2
879,618 - +0.0
879,624 + +0.2
879,632 - +0.4
879,632 - +0.8
879,633 + +0.0
879,638 + -0.1
879,638 - -0.1
879,682 + -1.6
879,690 - -0.1
879,717 + -1.5
879,851 + CCNA_00816 0.68 -0.3
879,851 + CCNA_00816 0.68 +0.4
879,853 + CCNA_00816 0.69 +1.5
879,882 + CCNA_00816 0.84 -0.4
879,890 - CCNA_00816 0.88 -0.0
879,896 + +0.4
879,942 + +2.5
879,942 + -1.3
879,948 + +0.2
879,950 - +0.6
879,954 + +0.2
879,956 - +0.4
879,956 - +0.2
879,956 - +0.3
880,002 + +0.7
880,049 + -0.9
880,049 + +0.3
880,049 + -1.5
880,049 + -0.2
880,049 + +0.1
880,049 + +0.1
880,049 + +0.5
880,049 + -0.6
880,056 + +1.3
880,057 - +0.3
880,057 - +0.7
880,057 - -0.4
880,057 - +1.0
880,058 - +0.3
880,073 + -0.9
880,099 - CCNA_00817 0.11 +1.5
880,128 + CCNA_00817 0.13 -0.8
880,149 - CCNA_00817 0.15 +0.4
880,160 - CCNA_00817 0.15 +1.1
880,265 + CCNA_00817 0.23 -0.9
880,265 + CCNA_00817 0.23 -0.2
880,265 - CCNA_00817 0.23 +0.9
880,272 + CCNA_00817 0.24 +0.1
880,278 - CCNA_00817 0.24 -0.5
880,303 + CCNA_00817 0.26 +0.6
880,303 + CCNA_00817 0.26 -0.1
880,311 + CCNA_00817 0.27 -0.5
880,323 + CCNA_00817 0.28 -0.0
880,336 + CCNA_00817 0.29 -0.5
880,358 + CCNA_00817 0.30 +0.1
880,370 + CCNA_00817 0.31 +1.1
880,391 + CCNA_00817 0.33 -0.1
880,396 + CCNA_00817 0.33 +0.2
880,419 + CCNA_00817 0.35 +0.8
880,427 - CCNA_00817 0.35 -0.3
880,452 + CCNA_00817 0.37 -0.3
880,452 + CCNA_00817 0.37 +0.0
880,452 + CCNA_00817 0.37 -0.1
880,452 + CCNA_00817 0.37 +1.3
880,460 - CCNA_00817 0.38 +0.4
880,460 - CCNA_00817 0.38 -0.7
880,460 - CCNA_00817 0.38 -0.2
880,460 - CCNA_00817 0.38 +0.4
880,484 - CCNA_00817 0.40 -0.5
880,484 - CCNA_00817 0.40 -0.3
880,494 + CCNA_00817 0.40 -0.1
880,494 + CCNA_00817 0.40 +0.9
880,499 + CCNA_00817 0.41 +1.3
880,502 - CCNA_00817 0.41 +0.7
880,553 - CCNA_00817 0.45 -1.7
880,565 + CCNA_00817 0.46 -0.6
880,612 - CCNA_00817 0.49 +0.4
880,620 + CCNA_00817 0.50 -0.3
880,620 + CCNA_00817 0.50 -1.3
880,620 + CCNA_00817 0.50 -0.1
880,628 - CCNA_00817 0.51 -0.5
880,635 - CCNA_00817 0.51 -1.5
880,635 - CCNA_00817 0.51 -0.5
880,670 - CCNA_00817 0.54 -0.4
880,740 + CCNA_00817 0.59 +0.7
880,740 + CCNA_00817 0.59 -0.1
880,740 + CCNA_00817 0.59 -1.3
880,740 + CCNA_00817 0.59 -1.2
880,740 + CCNA_00817 0.59 +0.0
880,740 + CCNA_00817 0.59 +0.1
880,748 - CCNA_00817 0.60 -1.3
880,748 - CCNA_00817 0.60 -0.1
880,785 + CCNA_00817 0.62 -0.1
880,785 - CCNA_00817 0.62 +0.2
880,793 + CCNA_00817 0.63 -1.2
880,793 + CCNA_00817 0.63 -0.3
880,798 + CCNA_00817 0.63 -0.4
880,801 - CCNA_00817 0.64 +0.1
880,806 - CCNA_00817 0.64 -0.3
880,825 - CCNA_00817 0.65 -0.9
880,831 + CCNA_00817 0.66 +1.0
880,847 - CCNA_00817 0.67 -3.0
880,847 - CCNA_00817 0.67 -0.5
880,847 - CCNA_00817 0.67 -1.0
880,886 + CCNA_00817 0.70 -0.4
880,909 - CCNA_00817 0.72 +0.5

Or see this region's nucleotide sequence