Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00761

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00760 and CCNA_00761 are separated by 144 nucleotidesCCNA_00761 and CCNA_00762 overlap by 4 nucleotidesCCNA_00762 and CCNA_00763 are separated by 4 nucleotides CCNA_00760: CCNA_00760 - two component sensor histidine kinase, at 818,810 to 820,510 _00760 CCNA_00761: CCNA_00761 - hypothetical protein, at 820,655 to 820,864 _00761 CCNA_00762: CCNA_00762 - hypothetical protein, at 820,861 to 821,205 _00762 CCNA_00763: CCNA_00763 - electron transfer flavoprotein alpha subunit, at 821,210 to 822,151 _00763 Position (kb) 820 821Strain fitness (log2 ratio) -2 -1 0 1 2at 819.657 kb on - strand, within CCNA_00760at 819.726 kb on + strand, within CCNA_00760at 819.733 kb on - strand, within CCNA_00760at 819.745 kb on - strand, within CCNA_00760at 819.747 kb on + strand, within CCNA_00760at 819.747 kb on + strand, within CCNA_00760at 819.755 kb on - strand, within CCNA_00760at 819.755 kb on - strand, within CCNA_00760at 819.755 kb on - strand, within CCNA_00760at 819.755 kb on - strand, within CCNA_00760at 819.757 kb on + strand, within CCNA_00760at 819.757 kb on + strand, within CCNA_00760at 819.758 kb on + strand, within CCNA_00760at 819.758 kb on + strand, within CCNA_00760at 819.759 kb on + strand, within CCNA_00760at 819.763 kb on + strand, within CCNA_00760at 819.766 kb on - strand, within CCNA_00760at 819.766 kb on - strand, within CCNA_00760at 819.766 kb on - strand, within CCNA_00760at 819.766 kb on - strand, within CCNA_00760at 819.789 kb on + strand, within CCNA_00760at 819.797 kb on - strand, within CCNA_00760at 819.799 kb on + strand, within CCNA_00760at 819.860 kb on + strand, within CCNA_00760at 819.868 kb on - strand, within CCNA_00760at 819.877 kb on + strand, within CCNA_00760at 819.906 kb on + strand, within CCNA_00760at 819.909 kb on - strand, within CCNA_00760at 819.914 kb on - strand, within CCNA_00760at 819.936 kb on + strand, within CCNA_00760at 819.946 kb on + strand, within CCNA_00760at 819.946 kb on + strand, within CCNA_00760at 819.946 kb on + strand, within CCNA_00760at 819.982 kb on - strand, within CCNA_00760at 820.027 kb on + strand, within CCNA_00760at 820.075 kb on - strand, within CCNA_00760at 820.119 kb on + strand, within CCNA_00760at 820.119 kb on + strand, within CCNA_00760at 820.119 kb on + strand, within CCNA_00760at 820.119 kb on + strand, within CCNA_00760at 820.127 kb on - strand, within CCNA_00760at 820.127 kb on - strand, within CCNA_00760at 820.127 kb on - strand, within CCNA_00760at 820.127 kb on - strand, within CCNA_00760at 820.142 kb on - strand, within CCNA_00760at 820.161 kb on - strand, within CCNA_00760at 820.166 kb on + strand, within CCNA_00760at 820.168 kb on - strand, within CCNA_00760at 820.169 kb on - strand, within CCNA_00760at 820.192 kb on + strand, within CCNA_00760at 820.195 kb on - strand, within CCNA_00760at 820.197 kb on + strand, within CCNA_00760at 820.251 kb on - strand, within CCNA_00760at 820.267 kb on + strand, within CCNA_00760at 820.272 kb on + strand, within CCNA_00760at 820.290 kb on - strand, within CCNA_00760at 820.295 kb on - strand, within CCNA_00760at 820.333 kb on - strand, within CCNA_00760at 820.344 kb on + strandat 820.352 kb on - strandat 820.357 kb on - strandat 820.362 kb on + strandat 820.362 kb on + strandat 820.370 kb on - strandat 820.370 kb on - strandat 820.370 kb on - strandat 820.370 kb on - strandat 820.370 kb on - strandat 820.375 kb on - strandat 820.398 kb on + strandat 820.398 kb on + strandat 820.398 kb on + strandat 820.398 kb on + strandat 820.406 kb on - strandat 820.406 kb on - strandat 820.406 kb on - strandat 820.406 kb on - strandat 820.406 kb on - strandat 820.406 kb on - strandat 820.406 kb on - strandat 820.406 kb on - strandat 820.444 kb on + strandat 820.529 kb on - strandat 820.555 kb on - strandat 820.560 kb on + strandat 820.568 kb on - strandat 820.583 kb on - strandat 820.618 kb on + strandat 820.647 kb on + strandat 820.647 kb on + strandat 820.649 kb on - strandat 820.670 kb on - strandat 820.688 kb on - strand, within CCNA_00761at 820.992 kb on + strand, within CCNA_00762at 821.009 kb on - strand, within CCNA_00762at 821.018 kb on - strand, within CCNA_00762at 821.039 kb on - strand, within CCNA_00762at 821.054 kb on + strand, within CCNA_00762at 821.062 kb on - strand, within CCNA_00762at 821.080 kb on + strand, within CCNA_00762at 821.080 kb on + strand, within CCNA_00762at 821.080 kb on + strand, within CCNA_00762at 821.088 kb on - strand, within CCNA_00762at 821.088 kb on - strand, within CCNA_00762at 821.111 kb on + strand, within CCNA_00762at 821.143 kb on - strand, within CCNA_00762

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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819,657 - CCNA_00760 0.50 -0.2
819,726 + CCNA_00760 0.54 +0.1
819,733 - CCNA_00760 0.54 +1.3
819,745 - CCNA_00760 0.55 +0.9
819,747 + CCNA_00760 0.55 +0.5
819,747 + CCNA_00760 0.55 +0.1
819,755 - CCNA_00760 0.56 -0.3
819,755 - CCNA_00760 0.56 +0.1
819,755 - CCNA_00760 0.56 +0.5
819,755 - CCNA_00760 0.56 +1.3
819,757 + CCNA_00760 0.56 +0.3
819,757 + CCNA_00760 0.56 +0.4
819,758 + CCNA_00760 0.56 +0.4
819,758 + CCNA_00760 0.56 -0.3
819,759 + CCNA_00760 0.56 +0.2
819,763 + CCNA_00760 0.56 +1.6
819,766 - CCNA_00760 0.56 +0.3
819,766 - CCNA_00760 0.56 +1.0
819,766 - CCNA_00760 0.56 +0.1
819,766 - CCNA_00760 0.56 +0.9
819,789 + CCNA_00760 0.58 +0.5
819,797 - CCNA_00760 0.58 +0.3
819,799 + CCNA_00760 0.58 -2.3
819,860 + CCNA_00760 0.62 +0.3
819,868 - CCNA_00760 0.62 -0.7
819,877 + CCNA_00760 0.63 +0.3
819,906 + CCNA_00760 0.64 -0.1
819,909 - CCNA_00760 0.65 +0.0
819,914 - CCNA_00760 0.65 +0.5
819,936 + CCNA_00760 0.66 -0.8
819,946 + CCNA_00760 0.67 -0.9
819,946 + CCNA_00760 0.67 -0.2
819,946 + CCNA_00760 0.67 -0.4
819,982 - CCNA_00760 0.69 +0.1
820,027 + CCNA_00760 0.72 +0.5
820,075 - CCNA_00760 0.74 +0.1
820,119 + CCNA_00760 0.77 -0.3
820,119 + CCNA_00760 0.77 +0.0
820,119 + CCNA_00760 0.77 -0.5
820,119 + CCNA_00760 0.77 -0.3
820,127 - CCNA_00760 0.77 +0.0
820,127 - CCNA_00760 0.77 +0.9
820,127 - CCNA_00760 0.77 -0.2
820,127 - CCNA_00760 0.77 -0.2
820,142 - CCNA_00760 0.78 +0.4
820,161 - CCNA_00760 0.79 +0.7
820,166 + CCNA_00760 0.80 -1.2
820,168 - CCNA_00760 0.80 +0.1
820,169 - CCNA_00760 0.80 +0.2
820,192 + CCNA_00760 0.81 +1.0
820,195 - CCNA_00760 0.81 +0.0
820,197 + CCNA_00760 0.82 +0.3
820,251 - CCNA_00760 0.85 +0.2
820,267 + CCNA_00760 0.86 -1.5
820,272 + CCNA_00760 0.86 -2.5
820,290 - CCNA_00760 0.87 -2.0
820,295 - CCNA_00760 0.87 +0.7
820,333 - CCNA_00760 0.90 +0.4
820,344 + +0.3
820,352 - +0.9
820,357 - +1.0
820,362 + -0.1
820,362 + +0.4
820,370 - +2.1
820,370 - -0.3
820,370 - +0.1
820,370 - +0.3
820,370 - +0.6
820,375 - +0.5
820,398 + +0.1
820,398 + -0.9
820,398 + +0.8
820,398 + -1.1
820,406 - +0.1
820,406 - +0.3
820,406 - +0.5
820,406 - +0.7
820,406 - -1.3
820,406 - -0.3
820,406 - -0.6
820,406 - +0.3
820,444 + +0.1
820,529 - +0.8
820,555 - -1.7
820,560 + -0.1
820,568 - -0.1
820,583 - +0.5
820,618 + -1.1
820,647 + -1.7
820,647 + +0.1
820,649 - +0.6
820,670 - -0.3
820,688 - CCNA_00761 0.16 -0.5
820,992 + CCNA_00762 0.38 +0.2
821,009 - CCNA_00762 0.43 -0.0
821,018 - CCNA_00762 0.46 -0.2
821,039 - CCNA_00762 0.52 +0.7
821,054 + CCNA_00762 0.56 +0.2
821,062 - CCNA_00762 0.58 -0.3
821,080 + CCNA_00762 0.63 +0.3
821,080 + CCNA_00762 0.63 -0.3
821,080 + CCNA_00762 0.63 +0.7
821,088 - CCNA_00762 0.66 +0.7
821,088 - CCNA_00762 0.66 +0.1
821,111 + CCNA_00762 0.72 +0.2
821,143 - CCNA_00762 0.82 +0.3

Or see this region's nucleotide sequence