Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00595 and CCNA_00596 overlap by 43 nucleotides CCNA_00596 and CCNA_00597 are separated by 158 nucleotides
CCNA_00595: CCNA_00595 - FecR family protein, at 626,899 to 627,888
_00595
CCNA_00596: CCNA_00596 - RpoE-family sigma factor, at 627,846 to 628,364
_00596
CCNA_00597: CCNA_00597 - TonB-dependent receptor, at 628,523 to 631,663
_00597
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 626.854 kb on - strand at 626.855 kb on - strand at 626.856 kb on - strand at 626.858 kb on + strand at 626.858 kb on + strand at 626.858 kb on + strand at 626.866 kb on - strand at 626.866 kb on - strand at 626.866 kb on - strand at 626.893 kb on - strand at 626.904 kb on - strand at 626.914 kb on - strand at 626.947 kb on + strand at 626.954 kb on + strand at 627.022 kb on + strand, within CCNA_00595 at 627.030 kb on - strand, within CCNA_00595 at 627.030 kb on - strand, within CCNA_00595 at 627.043 kb on + strand, within CCNA_00595 at 627.043 kb on + strand, within CCNA_00595 at 627.043 kb on + strand, within CCNA_00595 at 627.051 kb on - strand, within CCNA_00595 at 627.051 kb on - strand, within CCNA_00595 at 627.051 kb on - strand, within CCNA_00595 at 627.051 kb on - strand, within CCNA_00595 at 627.052 kb on - strand, within CCNA_00595 at 627.103 kb on + strand, within CCNA_00595 at 627.103 kb on + strand, within CCNA_00595 at 627.103 kb on + strand, within CCNA_00595 at 627.103 kb on + strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.111 kb on - strand, within CCNA_00595 at 627.128 kb on - strand, within CCNA_00595 at 627.187 kb on + strand, within CCNA_00595 at 627.196 kb on + strand, within CCNA_00595 at 627.196 kb on + strand, within CCNA_00595 at 627.204 kb on - strand, within CCNA_00595 at 627.206 kb on + strand, within CCNA_00595 at 627.206 kb on + strand, within CCNA_00595 at 627.209 kb on - strand, within CCNA_00595 at 627.220 kb on + strand, within CCNA_00595 at 627.220 kb on + strand, within CCNA_00595 at 627.228 kb on - strand, within CCNA_00595 at 627.300 kb on + strand, within CCNA_00595 at 627.309 kb on - strand, within CCNA_00595 at 627.314 kb on - strand, within CCNA_00595 at 627.320 kb on + strand, within CCNA_00595 at 627.321 kb on + strand, within CCNA_00595 at 627.328 kb on - strand, within CCNA_00595 at 627.371 kb on - strand, within CCNA_00595 at 627.380 kb on + strand, within CCNA_00595 at 627.380 kb on + strand, within CCNA_00595 at 627.380 kb on + strand, within CCNA_00595 at 627.385 kb on + strand, within CCNA_00595 at 627.388 kb on - strand, within CCNA_00595 at 627.388 kb on - strand, within CCNA_00595 at 627.388 kb on - strand, within CCNA_00595 at 627.388 kb on - strand, within CCNA_00595 at 627.388 kb on - strand, within CCNA_00595 at 627.526 kb on + strand, within CCNA_00595 at 627.534 kb on - strand, within CCNA_00595 at 627.534 kb on - strand, within CCNA_00595 at 627.546 kb on - strand, within CCNA_00595 at 627.550 kb on + strand, within CCNA_00595 at 627.551 kb on + strand, within CCNA_00595 at 627.558 kb on - strand, within CCNA_00595 at 627.558 kb on - strand, within CCNA_00595 at 627.558 kb on - strand, within CCNA_00595 at 627.565 kb on + strand, within CCNA_00595 at 627.585 kb on - strand, within CCNA_00595 at 627.598 kb on + strand, within CCNA_00595 at 627.627 kb on - strand, within CCNA_00595 at 627.672 kb on + strand, within CCNA_00595 at 627.680 kb on - strand, within CCNA_00595 at 627.683 kb on + strand, within CCNA_00595 at 627.729 kb on + strand, within CCNA_00595 at 627.759 kb on - strand, within CCNA_00595 at 627.777 kb on + strand, within CCNA_00595 at 627.817 kb on - strand at 627.833 kb on + strand at 627.833 kb on + strand at 627.863 kb on - strand at 627.867 kb on - strand at 627.867 kb on - strand at 627.868 kb on + strand at 627.875 kb on + strand at 627.876 kb on - strand at 627.876 kb on - strand at 627.878 kb on + strand at 627.899 kb on - strand, within CCNA_00596 at 627.903 kb on + strand, within CCNA_00596 at 627.904 kb on + strand, within CCNA_00596 at 627.912 kb on + strand, within CCNA_00596 at 627.920 kb on - strand, within CCNA_00596 at 627.920 kb on - strand, within CCNA_00596 at 627.920 kb on - strand, within CCNA_00596 at 628.006 kb on + strand, within CCNA_00596 at 628.014 kb on - strand, within CCNA_00596 at 628.014 kb on - strand, within CCNA_00596 at 628.016 kb on + strand, within CCNA_00596 at 628.016 kb on + strand, within CCNA_00596 at 628.024 kb on - strand, within CCNA_00596 at 628.030 kb on - strand, within CCNA_00596 at 628.063 kb on + strand, within CCNA_00596 at 628.068 kb on + strand, within CCNA_00596 at 628.068 kb on + strand, within CCNA_00596 at 628.076 kb on + strand, within CCNA_00596 at 628.084 kb on - strand, within CCNA_00596 at 628.084 kb on - strand, within CCNA_00596 at 628.102 kb on - strand, within CCNA_00596 at 628.112 kb on - strand, within CCNA_00596 at 628.129 kb on + strand, within CCNA_00596 at 628.129 kb on + strand, within CCNA_00596 at 628.177 kb on + strand, within CCNA_00596 at 628.184 kb on + strand, within CCNA_00596 at 628.185 kb on - strand, within CCNA_00596 at 628.187 kb on + strand, within CCNA_00596 at 628.192 kb on + strand, within CCNA_00596 at 628.205 kb on - strand, within CCNA_00596 at 628.259 kb on - strand, within CCNA_00596 at 628.267 kb on - strand, within CCNA_00596 at 628.280 kb on + strand, within CCNA_00596 at 628.288 kb on - strand, within CCNA_00596 at 628.290 kb on + strand, within CCNA_00596 at 628.338 kb on - strand at 628.379 kb on + strand at 628.390 kb on + strand at 628.393 kb on - strand at 628.398 kb on - strand at 628.407 kb on + strand at 628.415 kb on - strand at 628.439 kb on - strand at 628.439 kb on - strand at 628.439 kb on - strand at 628.451 kb on + strand at 628.451 kb on + strand at 628.451 kb on + strand at 628.454 kb on - strand at 628.459 kb on - strand at 628.459 kb on - strand at 628.473 kb on - strand at 628.476 kb on + strand at 628.476 kb on + strand at 628.476 kb on + strand at 628.476 kb on + strand at 628.476 kb on + strand at 628.484 kb on - strand at 628.498 kb on - strand at 628.503 kb on + strand at 628.503 kb on + strand at 628.503 kb on + strand at 628.511 kb on + strand at 628.519 kb on + strand at 628.528 kb on - strand at 628.528 kb on - strand at 628.534 kb on - strand at 628.534 kb on - strand at 628.534 kb on - strand at 628.557 kb on + strand at 628.600 kb on + strand at 628.608 kb on - strand at 628.652 kb on + strand at 628.672 kb on - strand at 628.679 kb on - strand at 628.684 kb on - strand at 628.690 kb on - strand at 628.726 kb on - strand at 628.750 kb on - strand at 628.814 kb on + strand at 628.827 kb on - strand at 628.844 kb on + strand, within CCNA_00597 at 628.878 kb on - strand, within CCNA_00597 at 628.889 kb on - strand, within CCNA_00597 at 628.915 kb on - strand, within CCNA_00597 at 628.947 kb on + strand, within CCNA_00597 at 628.950 kb on + strand, within CCNA_00597 at 628.966 kb on - strand, within CCNA_00597 at 628.984 kb on - strand, within CCNA_00597 at 629.014 kb on - strand, within CCNA_00597 at 629.014 kb on - strand, within CCNA_00597 at 629.016 kb on - strand, within CCNA_00597 at 629.016 kb on - strand, within CCNA_00597 at 629.055 kb on - strand, within CCNA_00597 at 629.091 kb on - strand, within CCNA_00597 at 629.131 kb on - strand, within CCNA_00597 at 629.131 kb on - strand, within CCNA_00597 at 629.131 kb on - strand, within CCNA_00597 at 629.192 kb on + strand, within CCNA_00597 at 629.210 kb on + strand, within CCNA_00597 at 629.225 kb on + strand, within CCNA_00597 at 629.226 kb on + strand, within CCNA_00597 at 629.226 kb on + strand, within CCNA_00597 at 629.226 kb on + strand, within CCNA_00597 at 629.249 kb on + strand, within CCNA_00597 at 629.250 kb on + strand, within CCNA_00597 at 629.256 kb on - strand, within CCNA_00597 at 629.274 kb on + strand, within CCNA_00597 at 629.274 kb on + strand, within CCNA_00597 at 629.282 kb on - strand, within CCNA_00597 at 629.282 kb on - strand, within CCNA_00597 at 629.282 kb on - strand, within CCNA_00597 at 629.282 kb on - strand, within CCNA_00597 at 629.292 kb on - strand, within CCNA_00597 at 629.342 kb on + strand, within CCNA_00597 at 629.342 kb on + strand, within CCNA_00597
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 626,854 - +0.1 626,855 - +0.3 626,856 - +1.2 626,858 + -0.7 626,858 + -0.5 626,858 + -0.1 626,866 - -0.1 626,866 - +0.5 626,866 - +2.8 626,893 - -1.9 626,904 - +0.2 626,914 - -0.3 626,947 + +0.1 626,954 + +0.3 627,022 + CCNA_00595 0.12 +0.7 627,030 - CCNA_00595 0.13 -0.4 627,030 - CCNA_00595 0.13 +0.5 627,043 + CCNA_00595 0.15 +0.2 627,043 + CCNA_00595 0.15 -1.4 627,043 + CCNA_00595 0.15 -1.8 627,051 - CCNA_00595 0.15 +0.6 627,051 - CCNA_00595 0.15 -0.8 627,051 - CCNA_00595 0.15 -0.6 627,051 - CCNA_00595 0.15 +0.0 627,052 - CCNA_00595 0.15 +0.2 627,103 + CCNA_00595 0.21 -0.4 627,103 + CCNA_00595 0.21 -0.8 627,103 + CCNA_00595 0.21 -1.0 627,103 + CCNA_00595 0.21 -0.6 627,111 - CCNA_00595 0.21 +0.2 627,111 - CCNA_00595 0.21 +0.9 627,111 - CCNA_00595 0.21 +1.1 627,111 - CCNA_00595 0.21 +0.6 627,111 - CCNA_00595 0.21 +0.4 627,111 - CCNA_00595 0.21 +0.2 627,111 - CCNA_00595 0.21 +0.5 627,111 - CCNA_00595 0.21 -0.8 627,111 - CCNA_00595 0.21 -0.5 627,128 - CCNA_00595 0.23 -0.7 627,187 + CCNA_00595 0.29 -0.7 627,196 + CCNA_00595 0.30 -0.9 627,196 + CCNA_00595 0.30 -0.8 627,204 - CCNA_00595 0.31 +0.4 627,206 + CCNA_00595 0.31 -1.5 627,206 + CCNA_00595 0.31 +1.2 627,209 - CCNA_00595 0.31 -0.2 627,220 + CCNA_00595 0.32 -0.2 627,220 + CCNA_00595 0.32 -2.5 627,228 - CCNA_00595 0.33 -0.1 627,300 + CCNA_00595 0.41 +0.2 627,309 - CCNA_00595 0.41 +0.8 627,314 - CCNA_00595 0.42 +0.7 627,320 + CCNA_00595 0.43 -0.6 627,321 + CCNA_00595 0.43 -0.5 627,328 - CCNA_00595 0.43 +0.1 627,371 - CCNA_00595 0.48 +0.1 627,380 + CCNA_00595 0.49 +0.5 627,380 + CCNA_00595 0.49 -0.1 627,380 + CCNA_00595 0.49 +0.2 627,385 + CCNA_00595 0.49 -1.5 627,388 - CCNA_00595 0.49 +0.2 627,388 - CCNA_00595 0.49 +0.3 627,388 - CCNA_00595 0.49 +0.6 627,388 - CCNA_00595 0.49 -0.7 627,388 - CCNA_00595 0.49 +0.2 627,526 + CCNA_00595 0.63 -1.4 627,534 - CCNA_00595 0.64 +0.4 627,534 - CCNA_00595 0.64 -0.6 627,546 - CCNA_00595 0.65 -0.2 627,550 + CCNA_00595 0.66 -0.1 627,551 + CCNA_00595 0.66 -1.1 627,558 - CCNA_00595 0.67 -0.4 627,558 - CCNA_00595 0.67 -0.1 627,558 - CCNA_00595 0.67 -0.2 627,565 + CCNA_00595 0.67 -0.3 627,585 - CCNA_00595 0.69 -0.5 627,598 + CCNA_00595 0.71 -0.8 627,627 - CCNA_00595 0.74 +0.4 627,672 + CCNA_00595 0.78 -0.8 627,680 - CCNA_00595 0.79 -0.6 627,683 + CCNA_00595 0.79 -0.6 627,729 + CCNA_00595 0.84 +0.4 627,759 - CCNA_00595 0.87 +0.1 627,777 + CCNA_00595 0.89 -0.5 627,817 - -0.2 627,833 + -0.4 627,833 + +0.2 627,863 - +0.1 627,867 - -0.5 627,867 - +0.1 627,868 + +0.0 627,875 + -0.5 627,876 - -2.1 627,876 - +0.3 627,878 + +1.0 627,899 - CCNA_00596 0.10 +0.1 627,903 + CCNA_00596 0.11 -1.3 627,904 + CCNA_00596 0.11 +0.1 627,912 + CCNA_00596 0.13 -1.5 627,920 - CCNA_00596 0.14 +0.3 627,920 - CCNA_00596 0.14 -0.2 627,920 - CCNA_00596 0.14 +0.3 628,006 + CCNA_00596 0.31 -1.3 628,014 - CCNA_00596 0.32 +0.1 628,014 - CCNA_00596 0.32 +0.2 628,016 + CCNA_00596 0.33 +0.4 628,016 + CCNA_00596 0.33 -0.3 628,024 - CCNA_00596 0.34 +0.1 628,030 - CCNA_00596 0.35 +0.3 628,063 + CCNA_00596 0.42 +0.2 628,068 + CCNA_00596 0.43 -0.8 628,068 + CCNA_00596 0.43 -1.6 628,076 + CCNA_00596 0.44 +1.8 628,084 - CCNA_00596 0.46 -0.1 628,084 - CCNA_00596 0.46 +0.7 628,102 - CCNA_00596 0.49 -0.1 628,112 - CCNA_00596 0.51 -0.4 628,129 + CCNA_00596 0.55 -1.2 628,129 + CCNA_00596 0.55 -0.4 628,177 + CCNA_00596 0.64 -1.3 628,184 + CCNA_00596 0.65 +0.3 628,185 - CCNA_00596 0.65 -1.3 628,187 + CCNA_00596 0.66 +0.0 628,192 + CCNA_00596 0.67 -0.7 628,205 - CCNA_00596 0.69 +0.1 628,259 - CCNA_00596 0.80 -1.7 628,267 - CCNA_00596 0.81 -1.2 628,280 + CCNA_00596 0.84 -1.8 628,288 - CCNA_00596 0.85 -0.7 628,290 + CCNA_00596 0.86 -3.2 628,338 - +0.2 628,379 + -0.8 628,390 + -0.7 628,393 - +0.7 628,398 - +1.0 628,407 + +1.0 628,415 - +1.1 628,439 - +0.0 628,439 - +0.6 628,439 - +0.5 628,451 + +0.1 628,451 + -1.2 628,451 + -0.3 628,454 - -0.4 628,459 - -1.7 628,459 - -0.9 628,473 - -2.2 628,476 + -0.3 628,476 + +0.1 628,476 + -0.4 628,476 + -2.2 628,476 + -0.0 628,484 - -0.5 628,498 - -1.3 628,503 + +0.3 628,503 + +0.6 628,503 + -1.6 628,511 + +0.3 628,519 + +0.3 628,528 - -1.5 628,528 - -0.1 628,534 - +0.0 628,534 - +0.5 628,534 - +0.3 628,557 + +0.0 628,600 + +0.3 628,608 - -0.4 628,652 + +1.1 628,672 - -0.1 628,679 - -1.2 628,684 - +0.1 628,690 - -1.4 628,726 - +1.3 628,750 - +0.6 628,814 + -0.3 628,827 - -1.1 628,844 + CCNA_00597 0.10 +0.2 628,878 - CCNA_00597 0.11 -1.3 628,889 - CCNA_00597 0.12 +0.6 628,915 - CCNA_00597 0.12 +0.6 628,947 + CCNA_00597 0.13 -0.1 628,950 + CCNA_00597 0.14 -0.5 628,966 - CCNA_00597 0.14 +0.3 628,984 - CCNA_00597 0.15 +0.2 629,014 - CCNA_00597 0.16 -2.0 629,014 - CCNA_00597 0.16 -0.8 629,016 - CCNA_00597 0.16 +1.0 629,016 - CCNA_00597 0.16 +0.2 629,055 - CCNA_00597 0.17 -0.0 629,091 - CCNA_00597 0.18 +0.7 629,131 - CCNA_00597 0.19 -1.6 629,131 - CCNA_00597 0.19 +0.8 629,131 - CCNA_00597 0.19 -0.7 629,192 + CCNA_00597 0.21 -0.1 629,210 + CCNA_00597 0.22 +0.6 629,225 + CCNA_00597 0.22 +0.1 629,226 + CCNA_00597 0.22 -0.2 629,226 + CCNA_00597 0.22 +0.2 629,226 + CCNA_00597 0.22 +1.5 629,249 + CCNA_00597 0.23 -1.2 629,250 + CCNA_00597 0.23 +1.3 629,256 - CCNA_00597 0.23 +0.2 629,274 + CCNA_00597 0.24 +0.7 629,274 + CCNA_00597 0.24 +0.2 629,282 - CCNA_00597 0.24 +0.3 629,282 - CCNA_00597 0.24 -0.5 629,282 - CCNA_00597 0.24 -0.3 629,282 - CCNA_00597 0.24 -0.9 629,292 - CCNA_00597 0.24 -0.5 629,342 + CCNA_00597 0.26 -1.6 629,342 + CCNA_00597 0.26 -0.6
Or see this region's nucleotide sequence