Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00554

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00552 and CCNA_00553 overlap by 4 nucleotidesCCNA_00553 and CCNA_00554 are separated by 65 nucleotidesCCNA_00554 and CCNA_00555 are separated by 72 nucleotidesCCNA_00555 and CCNA_00556 are separated by 84 nucleotides CCNA_00552: CCNA_00552 - cupin superfamily protein, at 568,956 to 569,426 _00552 CCNA_00553: CCNA_00553 - hydroxyacylglutathione hydrolase, at 569,423 to 570,172 _00553 CCNA_00554: CCNA_00554 - methyltransferase, at 570,238 to 571,044 _00554 CCNA_00555: CCNA_00555 - nitrogen regulatory protein P-II, at 571,117 to 571,461 _00555 CCNA_00556: CCNA_00556 - phospholipase D, at 571,546 to 573,063 _00556 Position (kb) 570 571 572Strain fitness (log2 ratio) -2 -1 0 1at 569.238 kb on + strand, within CCNA_00552at 569.238 kb on + strand, within CCNA_00552at 569.241 kb on - strand, within CCNA_00552at 569.241 kb on - strand, within CCNA_00552at 569.267 kb on - strand, within CCNA_00552at 569.279 kb on - strand, within CCNA_00552at 569.334 kb on - strand, within CCNA_00552at 569.359 kb on - strand, within CCNA_00552at 569.396 kb on + strandat 569.402 kb on + strandat 569.404 kb on - strandat 569.404 kb on - strandat 569.404 kb on - strandat 569.410 kb on - strandat 569.428 kb on + strandat 569.436 kb on - strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.438 kb on + strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.446 kb on - strandat 569.493 kb on - strandat 569.498 kb on - strand, within CCNA_00553at 569.508 kb on - strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.589 kb on + strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.597 kb on - strand, within CCNA_00553at 569.602 kb on + strand, within CCNA_00553at 569.626 kb on - strand, within CCNA_00553at 569.655 kb on + strand, within CCNA_00553at 569.655 kb on + strand, within CCNA_00553at 569.663 kb on - strand, within CCNA_00553at 569.680 kb on - strand, within CCNA_00553at 569.712 kb on + strand, within CCNA_00553at 569.726 kb on + strand, within CCNA_00553at 569.739 kb on + strand, within CCNA_00553at 569.747 kb on - strand, within CCNA_00553at 569.759 kb on + strand, within CCNA_00553at 569.759 kb on + strand, within CCNA_00553at 569.767 kb on - strand, within CCNA_00553at 569.877 kb on + strand, within CCNA_00553at 569.881 kb on + strand, within CCNA_00553at 569.881 kb on + strand, within CCNA_00553at 569.889 kb on - strand, within CCNA_00553at 569.901 kb on + strand, within CCNA_00553at 569.906 kb on + strand, within CCNA_00553at 569.906 kb on + strand, within CCNA_00553at 569.914 kb on - strand, within CCNA_00553at 569.990 kb on - strand, within CCNA_00553at 570.012 kb on + strand, within CCNA_00553at 570.016 kb on + strand, within CCNA_00553at 570.057 kb on - strand, within CCNA_00553at 570.077 kb on - strand, within CCNA_00553at 570.095 kb on - strand, within CCNA_00553at 570.107 kb on - strandat 570.169 kb on + strandat 570.177 kb on - strandat 570.177 kb on - strandat 570.177 kb on - strandat 570.185 kb on + strandat 570.203 kb on + strandat 570.211 kb on - strandat 570.250 kb on - strandat 570.265 kb on + strandat 570.267 kb on + strandat 570.267 kb on + strandat 570.288 kb on - strandat 570.326 kb on - strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.327 kb on + strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.335 kb on - strand, within CCNA_00554at 570.369 kb on - strand, within CCNA_00554at 570.369 kb on - strand, within CCNA_00554at 570.389 kb on - strand, within CCNA_00554at 570.433 kb on + strand, within CCNA_00554at 570.445 kb on + strand, within CCNA_00554at 570.457 kb on - strand, within CCNA_00554at 570.510 kb on + strand, within CCNA_00554at 570.512 kb on + strand, within CCNA_00554at 570.518 kb on - strand, within CCNA_00554at 570.518 kb on - strand, within CCNA_00554at 570.631 kb on + strand, within CCNA_00554at 570.649 kb on - strand, within CCNA_00554at 570.656 kb on - strand, within CCNA_00554at 570.680 kb on + strand, within CCNA_00554at 570.700 kb on - strand, within CCNA_00554at 570.743 kb on - strand, within CCNA_00554at 570.752 kb on + strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.760 kb on - strand, within CCNA_00554at 570.797 kb on - strand, within CCNA_00554at 570.805 kb on - strand, within CCNA_00554at 570.806 kb on + strand, within CCNA_00554at 570.807 kb on - strand, within CCNA_00554at 570.821 kb on + strand, within CCNA_00554at 570.821 kb on + strand, within CCNA_00554at 570.824 kb on - strand, within CCNA_00554at 570.824 kb on - strand, within CCNA_00554at 570.824 kb on - strand, within CCNA_00554at 570.824 kb on - strand, within CCNA_00554at 570.827 kb on + strand, within CCNA_00554at 570.829 kb on - strand, within CCNA_00554at 570.871 kb on + strand, within CCNA_00554at 570.891 kb on + strand, within CCNA_00554at 570.894 kb on - strand, within CCNA_00554at 570.945 kb on - strand, within CCNA_00554at 570.947 kb on + strand, within CCNA_00554at 570.950 kb on - strand, within CCNA_00554at 570.950 kb on - strand, within CCNA_00554at 570.955 kb on - strand, within CCNA_00554at 570.996 kb on + strandat 570.996 kb on + strandat 570.999 kb on - strandat 570.999 kb on - strandat 571.004 kb on - strandat 571.026 kb on + strandat 571.031 kb on + strandat 571.031 kb on + strandat 571.031 kb on + strandat 571.039 kb on - strandat 571.039 kb on - strandat 571.041 kb on - strandat 571.075 kb on + strandat 571.102 kb on + strandat 571.102 kb on + strandat 571.115 kb on + strandat 571.151 kb on + strandat 571.164 kb on + strand, within CCNA_00555at 571.190 kb on + strand, within CCNA_00555at 571.190 kb on + strand, within CCNA_00555at 571.198 kb on - strand, within CCNA_00555at 571.198 kb on - strand, within CCNA_00555at 571.198 kb on - strand, within CCNA_00555at 571.198 kb on - strand, within CCNA_00555at 571.219 kb on + strand, within CCNA_00555at 571.236 kb on + strand, within CCNA_00555at 571.244 kb on - strand, within CCNA_00555at 571.249 kb on + strand, within CCNA_00555at 571.280 kb on - strand, within CCNA_00555at 571.284 kb on + strand, within CCNA_00555at 571.284 kb on + strand, within CCNA_00555at 571.284 kb on + strand, within CCNA_00555at 571.317 kb on - strand, within CCNA_00555at 571.317 kb on - strand, within CCNA_00555at 571.335 kb on + strand, within CCNA_00555at 571.350 kb on - strand, within CCNA_00555at 571.353 kb on - strand, within CCNA_00555at 571.380 kb on + strand, within CCNA_00555at 571.388 kb on - strand, within CCNA_00555at 571.389 kb on - strand, within CCNA_00555at 571.399 kb on + strand, within CCNA_00555at 571.434 kb on + strandat 571.509 kb on + strandat 571.529 kb on + strandat 571.546 kb on - strandat 571.546 kb on - strandat 571.548 kb on + strandat 571.590 kb on - strandat 571.599 kb on + strandat 571.647 kb on - strandat 571.696 kb on + strandat 571.698 kb on - strand, within CCNA_00556at 571.698 kb on - strand, within CCNA_00556at 571.704 kb on - strand, within CCNA_00556at 571.728 kb on + strand, within CCNA_00556at 571.728 kb on + strand, within CCNA_00556at 571.730 kb on - strand, within CCNA_00556at 571.730 kb on - strand, within CCNA_00556at 571.736 kb on - strand, within CCNA_00556at 571.736 kb on - strand, within CCNA_00556at 571.738 kb on + strand, within CCNA_00556at 571.741 kb on - strand, within CCNA_00556at 571.741 kb on - strand, within CCNA_00556at 571.830 kb on - strand, within CCNA_00556at 571.833 kb on + strand, within CCNA_00556at 571.841 kb on - strand, within CCNA_00556at 571.878 kb on - strand, within CCNA_00556at 571.883 kb on + strand, within CCNA_00556at 571.920 kb on + strand, within CCNA_00556at 571.925 kb on + strand, within CCNA_00556at 571.934 kb on - strand, within CCNA_00556at 571.974 kb on - strand, within CCNA_00556at 571.974 kb on - strand, within CCNA_00556at 572.004 kb on + strand, within CCNA_00556at 572.012 kb on - strand, within CCNA_00556at 572.012 kb on - strand, within CCNA_00556at 572.012 kb on - strand, within CCNA_00556at 572.012 kb on - strand, within CCNA_00556at 572.024 kb on + strand, within CCNA_00556at 572.024 kb on + strand, within CCNA_00556at 572.039 kb on + strand, within CCNA_00556

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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569,238 + CCNA_00552 0.60 -0.8
569,238 + CCNA_00552 0.60 -1.5
569,241 - CCNA_00552 0.61 +1.1
569,241 - CCNA_00552 0.61 +0.6
569,267 - CCNA_00552 0.66 +0.6
569,279 - CCNA_00552 0.69 +0.6
569,334 - CCNA_00552 0.80 +0.7
569,359 - CCNA_00552 0.86 +0.4
569,396 + -0.4
569,402 + -0.2
569,404 - +0.8
569,404 - +0.2
569,404 - +1.1
569,410 - -0.0
569,428 + -1.8
569,436 - +0.1
569,438 + +0.8
569,438 + +0.5
569,438 + -1.4
569,438 + -0.2
569,438 + +0.7
569,446 - +0.7
569,446 - +0.3
569,446 - -0.1
569,446 - +0.3
569,446 - +0.2
569,446 - +0.4
569,493 - +0.1
569,498 - CCNA_00553 0.10 -0.1
569,508 - CCNA_00553 0.11 +0.3
569,589 + CCNA_00553 0.22 +0.9
569,589 + CCNA_00553 0.22 +0.5
569,589 + CCNA_00553 0.22 -1.4
569,589 + CCNA_00553 0.22 -0.5
569,597 - CCNA_00553 0.23 -0.5
569,597 - CCNA_00553 0.23 -0.4
569,597 - CCNA_00553 0.23 +0.6
569,602 + CCNA_00553 0.24 +0.4
569,626 - CCNA_00553 0.27 +0.1
569,655 + CCNA_00553 0.31 +0.9
569,655 + CCNA_00553 0.31 +0.1
569,663 - CCNA_00553 0.32 +0.4
569,680 - CCNA_00553 0.34 +0.5
569,712 + CCNA_00553 0.39 -0.4
569,726 + CCNA_00553 0.40 -0.4
569,739 + CCNA_00553 0.42 +1.0
569,747 - CCNA_00553 0.43 -0.2
569,759 + CCNA_00553 0.45 +0.1
569,759 + CCNA_00553 0.45 -0.0
569,767 - CCNA_00553 0.46 +0.3
569,877 + CCNA_00553 0.61 +0.1
569,881 + CCNA_00553 0.61 +0.1
569,881 + CCNA_00553 0.61 +0.1
569,889 - CCNA_00553 0.62 -0.1
569,901 + CCNA_00553 0.64 -0.2
569,906 + CCNA_00553 0.64 +0.1
569,906 + CCNA_00553 0.64 -0.3
569,914 - CCNA_00553 0.65 -0.5
569,990 - CCNA_00553 0.76 -0.3
570,012 + CCNA_00553 0.79 +0.5
570,016 + CCNA_00553 0.79 +0.8
570,057 - CCNA_00553 0.85 +0.2
570,077 - CCNA_00553 0.87 +1.3
570,095 - CCNA_00553 0.90 -0.6
570,107 - -0.1
570,169 + -0.1
570,177 - -0.1
570,177 - -0.3
570,177 - +0.1
570,185 + +0.2
570,203 + +0.9
570,211 - -1.4
570,250 - +0.0
570,265 + +0.2
570,267 + -0.4
570,267 + +0.2
570,288 - -0.4
570,326 - CCNA_00554 0.11 -0.0
570,327 + CCNA_00554 0.11 +0.7
570,327 + CCNA_00554 0.11 +0.1
570,327 + CCNA_00554 0.11 +0.1
570,335 - CCNA_00554 0.12 +0.2
570,335 - CCNA_00554 0.12 +0.5
570,369 - CCNA_00554 0.16 -0.1
570,369 - CCNA_00554 0.16 +0.1
570,389 - CCNA_00554 0.19 +0.8
570,433 + CCNA_00554 0.24 +0.5
570,445 + CCNA_00554 0.26 +0.2
570,457 - CCNA_00554 0.27 -0.7
570,510 + CCNA_00554 0.34 +0.4
570,512 + CCNA_00554 0.34 +0.3
570,518 - CCNA_00554 0.35 +0.2
570,518 - CCNA_00554 0.35 +1.6
570,631 + CCNA_00554 0.49 +1.3
570,649 - CCNA_00554 0.51 +0.2
570,656 - CCNA_00554 0.52 +0.5
570,680 + CCNA_00554 0.55 +1.3
570,700 - CCNA_00554 0.57 +0.2
570,743 - CCNA_00554 0.63 -0.2
570,752 + CCNA_00554 0.64 +0.9
570,760 - CCNA_00554 0.65 +0.7
570,760 - CCNA_00554 0.65 +0.6
570,760 - CCNA_00554 0.65 +0.4
570,760 - CCNA_00554 0.65 -0.1
570,760 - CCNA_00554 0.65 +0.5
570,797 - CCNA_00554 0.69 +0.1
570,805 - CCNA_00554 0.70 +0.0
570,806 + CCNA_00554 0.70 +0.4
570,807 - CCNA_00554 0.71 -0.5
570,821 + CCNA_00554 0.72 +0.4
570,821 + CCNA_00554 0.72 +0.2
570,824 - CCNA_00554 0.73 -1.8
570,824 - CCNA_00554 0.73 -0.1
570,824 - CCNA_00554 0.73 -0.7
570,824 - CCNA_00554 0.73 -0.3
570,827 + CCNA_00554 0.73 +0.6
570,829 - CCNA_00554 0.73 -0.0
570,871 + CCNA_00554 0.78 +0.7
570,891 + CCNA_00554 0.81 +0.4
570,894 - CCNA_00554 0.81 +1.4
570,945 - CCNA_00554 0.88 +0.4
570,947 + CCNA_00554 0.88 -0.0
570,950 - CCNA_00554 0.88 -0.3
570,950 - CCNA_00554 0.88 +0.2
570,955 - CCNA_00554 0.89 -0.1
570,996 + +0.4
570,996 + +0.8
570,999 - -0.1
570,999 - +0.2
571,004 - +0.2
571,026 + +0.1
571,031 + -1.3
571,031 + +1.6
571,031 + +0.5
571,039 - +0.0
571,039 - +0.4
571,041 - -0.1
571,075 + +0.9
571,102 + -0.2
571,102 + +0.4
571,115 + -0.0
571,151 + +0.3
571,164 + CCNA_00555 0.14 +0.2
571,190 + CCNA_00555 0.21 +0.5
571,190 + CCNA_00555 0.21 +0.6
571,198 - CCNA_00555 0.23 -0.5
571,198 - CCNA_00555 0.23 -1.2
571,198 - CCNA_00555 0.23 +0.1
571,198 - CCNA_00555 0.23 -0.1
571,219 + CCNA_00555 0.30 +0.2
571,236 + CCNA_00555 0.34 -0.1
571,244 - CCNA_00555 0.37 -0.4
571,249 + CCNA_00555 0.38 +0.1
571,280 - CCNA_00555 0.47 -0.5
571,284 + CCNA_00555 0.48 +0.1
571,284 + CCNA_00555 0.48 -0.9
571,284 + CCNA_00555 0.48 +0.9
571,317 - CCNA_00555 0.58 -0.8
571,317 - CCNA_00555 0.58 +0.7
571,335 + CCNA_00555 0.63 +0.2
571,350 - CCNA_00555 0.68 -0.8
571,353 - CCNA_00555 0.68 +0.9
571,380 + CCNA_00555 0.76 -0.1
571,388 - CCNA_00555 0.79 -0.1
571,389 - CCNA_00555 0.79 -0.2
571,399 + CCNA_00555 0.82 +0.9
571,434 + -0.1
571,509 + +0.5
571,529 + +0.8
571,546 - -0.4
571,546 - +0.4
571,548 + -0.5
571,590 - -1.5
571,599 + +0.1
571,647 - +0.6
571,696 + +0.2
571,698 - CCNA_00556 0.10 +0.5
571,698 - CCNA_00556 0.10 -2.7
571,704 - CCNA_00556 0.10 -0.5
571,728 + CCNA_00556 0.12 -0.2
571,728 + CCNA_00556 0.12 +0.8
571,730 - CCNA_00556 0.12 +1.1
571,730 - CCNA_00556 0.12 +0.6
571,736 - CCNA_00556 0.13 -0.2
571,736 - CCNA_00556 0.13 -0.5
571,738 + CCNA_00556 0.13 -2.3
571,741 - CCNA_00556 0.13 -0.1
571,741 - CCNA_00556 0.13 +0.2
571,830 - CCNA_00556 0.19 -0.7
571,833 + CCNA_00556 0.19 -1.0
571,841 - CCNA_00556 0.19 +1.3
571,878 - CCNA_00556 0.22 -1.5
571,883 + CCNA_00556 0.22 +0.8
571,920 + CCNA_00556 0.25 +0.1
571,925 + CCNA_00556 0.25 -0.1
571,934 - CCNA_00556 0.26 -0.2
571,974 - CCNA_00556 0.28 +0.1
571,974 - CCNA_00556 0.28 -0.5
572,004 + CCNA_00556 0.30 +0.0
572,012 - CCNA_00556 0.31 -0.5
572,012 - CCNA_00556 0.31 +0.3
572,012 - CCNA_00556 0.31 +0.1
572,012 - CCNA_00556 0.31 -0.1
572,024 + CCNA_00556 0.31 -1.8
572,024 + CCNA_00556 0.31 -0.1
572,039 + CCNA_00556 0.32 +0.7

Or see this region's nucleotide sequence