Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00222

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00220 and CCNA_00221 are separated by 6 nucleotidesCCNA_00221 and CCNA_00222 are separated by 104 nucleotidesCCNA_00222 and CCNA_00223 are separated by 8 nucleotidesCCNA_00223 and CCNA_00224 overlap by 4 nucleotides CCNA_00220: CCNA_00220 - thiol-disulfide isomerase and thioredoxin, at 237,030 to 237,635 _00220 CCNA_00221: CCNA_00221 - hypothetical protein, at 237,642 to 238,136 _00221 CCNA_00222: CCNA_00222 - glucose-6-phosphate isomerase/glucose-6 phosphate 1-epimerase, at 238,241 to 239,860 _00222 CCNA_00223: CCNA_00223 - esterase lipase Family protein, at 239,869 to 240,651 _00223 CCNA_00224: CCNA_00224 - TonB-dependent receptor protein, at 240,648 to 242,693 _00224 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2at 237.244 kb on - strand, within CCNA_00220at 237.246 kb on + strand, within CCNA_00220at 237.344 kb on + strand, within CCNA_00220at 237.358 kb on - strand, within CCNA_00220at 237.364 kb on - strand, within CCNA_00220at 237.364 kb on - strand, within CCNA_00220at 237.371 kb on + strand, within CCNA_00220at 237.379 kb on + strand, within CCNA_00220at 237.379 kb on - strand, within CCNA_00220at 237.416 kb on + strand, within CCNA_00220at 237.416 kb on + strand, within CCNA_00220at 237.424 kb on - strand, within CCNA_00220at 237.461 kb on - strand, within CCNA_00220at 237.470 kb on + strand, within CCNA_00220at 237.471 kb on + strand, within CCNA_00220at 237.471 kb on + strand, within CCNA_00220at 237.519 kb on + strand, within CCNA_00220at 237.526 kb on - strand, within CCNA_00220at 237.534 kb on - strand, within CCNA_00220at 237.557 kb on - strand, within CCNA_00220at 237.600 kb on - strandat 237.620 kb on + strandat 237.620 kb on + strandat 237.628 kb on - strandat 237.628 kb on - strandat 237.647 kb on - strandat 237.672 kb on + strandat 237.674 kb on + strandat 237.674 kb on + strandat 237.682 kb on - strandat 237.713 kb on + strand, within CCNA_00221at 237.721 kb on - strand, within CCNA_00221at 237.773 kb on + strand, within CCNA_00221at 237.773 kb on + strand, within CCNA_00221at 237.773 kb on + strand, within CCNA_00221at 237.773 kb on + strand, within CCNA_00221at 237.782 kb on - strand, within CCNA_00221at 237.782 kb on - strand, within CCNA_00221at 237.799 kb on + strand, within CCNA_00221at 237.815 kb on - strand, within CCNA_00221at 237.833 kb on - strand, within CCNA_00221at 237.876 kb on - strand, within CCNA_00221at 237.891 kb on + strand, within CCNA_00221at 237.908 kb on - strand, within CCNA_00221at 237.931 kb on + strand, within CCNA_00221at 237.931 kb on + strand, within CCNA_00221at 237.936 kb on + strand, within CCNA_00221at 237.939 kb on - strand, within CCNA_00221at 237.939 kb on - strand, within CCNA_00221at 237.944 kb on - strand, within CCNA_00221at 237.944 kb on - strand, within CCNA_00221at 237.944 kb on - strand, within CCNA_00221at 237.944 kb on - strand, within CCNA_00221at 237.961 kb on + strand, within CCNA_00221at 237.985 kb on + strand, within CCNA_00221at 238.076 kb on + strand, within CCNA_00221at 238.096 kb on + strandat 238.096 kb on + strandat 238.096 kb on + strandat 238.104 kb on - strandat 238.104 kb on - strandat 238.104 kb on - strandat 238.104 kb on - strandat 238.104 kb on - strandat 238.124 kb on + strandat 238.131 kb on + strandat 238.132 kb on - strandat 238.164 kb on - strandat 238.237 kb on + strandat 238.266 kb on - strandat 239.854 kb on + strandat 239.859 kb on + strandat 239.915 kb on - strandat 239.947 kb on + strandat 240.014 kb on - strand, within CCNA_00223at 240.058 kb on - strand, within CCNA_00223at 240.060 kb on + strand, within CCNA_00223at 240.061 kb on + strand, within CCNA_00223at 240.074 kb on - strand, within CCNA_00223at 240.082 kb on + strand, within CCNA_00223at 240.090 kb on - strand, within CCNA_00223at 240.113 kb on + strand, within CCNA_00223at 240.134 kb on + strand, within CCNA_00223at 240.154 kb on + strand, within CCNA_00223at 240.157 kb on - strand, within CCNA_00223at 240.162 kb on - strand, within CCNA_00223at 240.194 kb on - strand, within CCNA_00223at 240.199 kb on + strand, within CCNA_00223at 240.199 kb on + strand, within CCNA_00223at 240.262 kb on + strand, within CCNA_00223at 240.283 kb on - strand, within CCNA_00223at 240.299 kb on + strand, within CCNA_00223at 240.307 kb on - strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.318 kb on + strand, within CCNA_00223at 240.318 kb on + strand, within CCNA_00223at 240.318 kb on + strand, within CCNA_00223at 240.318 kb on + strand, within CCNA_00223at 240.318 kb on + strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.326 kb on - strand, within CCNA_00223at 240.326 kb on - strand, within CCNA_00223at 240.326 kb on - strand, within CCNA_00223at 240.326 kb on - strand, within CCNA_00223at 240.397 kb on + strand, within CCNA_00223at 240.402 kb on + strand, within CCNA_00223at 240.407 kb on + strand, within CCNA_00223at 240.407 kb on + strand, within CCNA_00223at 240.410 kb on - strand, within CCNA_00223at 240.410 kb on - strand, within CCNA_00223at 240.424 kb on + strand, within CCNA_00223at 240.430 kb on - strand, within CCNA_00223at 240.431 kb on - strand, within CCNA_00223at 240.440 kb on + strand, within CCNA_00223at 240.440 kb on + strand, within CCNA_00223at 240.456 kb on + strand, within CCNA_00223at 240.456 kb on + strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.498 kb on + strand, within CCNA_00223at 240.506 kb on - strand, within CCNA_00223at 240.506 kb on - strand, within CCNA_00223at 240.511 kb on - strand, within CCNA_00223at 240.511 kb on - strand, within CCNA_00223at 240.534 kb on - strand, within CCNA_00223at 240.539 kb on - strand, within CCNA_00223at 240.575 kb on + strandat 240.615 kb on + strandat 240.682 kb on - strandat 240.682 kb on - strandat 240.702 kb on + strandat 240.702 kb on + strandat 240.702 kb on + strandat 240.707 kb on + strandat 240.710 kb on - strandat 240.788 kb on - strandat 240.804 kb on + strandat 240.812 kb on - strandat 240.822 kb on - strandat 240.822 kb on - strandat 240.827 kb on - strandat 240.840 kb on + strandat 240.841 kb on - strandat 240.848 kb on - strandat 240.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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237,244 - CCNA_00220 0.35 -0.3
237,246 + CCNA_00220 0.36 +0.9
237,344 + CCNA_00220 0.52 +0.5
237,358 - CCNA_00220 0.54 -0.4
237,364 - CCNA_00220 0.55 +1.3
237,364 - CCNA_00220 0.55 +0.3
237,371 + CCNA_00220 0.56 -0.1
237,379 + CCNA_00220 0.58 -0.2
237,379 - CCNA_00220 0.58 +0.1
237,416 + CCNA_00220 0.64 -0.0
237,416 + CCNA_00220 0.64 +0.1
237,424 - CCNA_00220 0.65 -1.0
237,461 - CCNA_00220 0.71 -0.6
237,470 + CCNA_00220 0.73 +1.1
237,471 + CCNA_00220 0.73 +0.7
237,471 + CCNA_00220 0.73 +0.5
237,519 + CCNA_00220 0.81 +1.0
237,526 - CCNA_00220 0.82 +0.1
237,534 - CCNA_00220 0.83 +0.1
237,557 - CCNA_00220 0.87 +1.2
237,600 - +0.3
237,620 + +0.0
237,620 + +0.8
237,628 - +0.3
237,628 - -0.6
237,647 - -0.3
237,672 + +0.6
237,674 + +0.1
237,674 + +0.4
237,682 - +0.1
237,713 + CCNA_00221 0.14 -0.2
237,721 - CCNA_00221 0.16 -0.4
237,773 + CCNA_00221 0.26 +0.7
237,773 + CCNA_00221 0.26 +1.0
237,773 + CCNA_00221 0.26 +0.5
237,773 + CCNA_00221 0.26 +0.2
237,782 - CCNA_00221 0.28 -0.1
237,782 - CCNA_00221 0.28 +0.1
237,799 + CCNA_00221 0.32 +0.3
237,815 - CCNA_00221 0.35 +0.7
237,833 - CCNA_00221 0.39 +0.5
237,876 - CCNA_00221 0.47 -0.1
237,891 + CCNA_00221 0.50 +0.5
237,908 - CCNA_00221 0.54 +0.3
237,931 + CCNA_00221 0.58 +0.2
237,931 + CCNA_00221 0.58 +0.2
237,936 + CCNA_00221 0.59 +0.2
237,939 - CCNA_00221 0.60 +0.5
237,939 - CCNA_00221 0.60 +0.0
237,944 - CCNA_00221 0.61 +0.6
237,944 - CCNA_00221 0.61 +2.1
237,944 - CCNA_00221 0.61 +0.4
237,944 - CCNA_00221 0.61 +1.1
237,961 + CCNA_00221 0.64 -0.4
237,985 + CCNA_00221 0.69 -0.2
238,076 + CCNA_00221 0.88 -0.7
238,096 + -0.0
238,096 + +0.6
238,096 + +0.5
238,104 - -0.2
238,104 - -0.2
238,104 - -0.5
238,104 - +0.3
238,104 - -0.5
238,124 + -1.2
238,131 + -0.6
238,132 - +0.1
238,164 - +0.3
238,237 + -0.9
238,266 - +0.5
239,854 + +0.8
239,859 + +0.3
239,915 - +1.3
239,947 + +0.1
240,014 - CCNA_00223 0.19 -0.2
240,058 - CCNA_00223 0.24 -0.6
240,060 + CCNA_00223 0.24 +0.0
240,061 + CCNA_00223 0.25 +1.4
240,074 - CCNA_00223 0.26 -0.1
240,082 + CCNA_00223 0.27 +0.2
240,090 - CCNA_00223 0.28 -0.3
240,113 + CCNA_00223 0.31 -0.6
240,134 + CCNA_00223 0.34 -0.3
240,154 + CCNA_00223 0.36 +0.2
240,157 - CCNA_00223 0.37 -1.1
240,162 - CCNA_00223 0.37 -0.6
240,194 - CCNA_00223 0.42 -0.1
240,199 + CCNA_00223 0.42 -0.1
240,199 + CCNA_00223 0.42 +0.8
240,262 + CCNA_00223 0.50 +0.2
240,283 - CCNA_00223 0.53 -0.0
240,299 + CCNA_00223 0.55 +0.4
240,307 - CCNA_00223 0.56 -0.4
240,312 + CCNA_00223 0.57 +0.4
240,312 + CCNA_00223 0.57 +0.0
240,312 + CCNA_00223 0.57 +0.1
240,312 + CCNA_00223 0.57 -0.5
240,312 + CCNA_00223 0.57 -1.9
240,312 + CCNA_00223 0.57 +0.2
240,318 + CCNA_00223 0.57 -0.1
240,318 + CCNA_00223 0.57 -0.3
240,318 + CCNA_00223 0.57 +0.1
240,318 + CCNA_00223 0.57 +0.5
240,318 + CCNA_00223 0.57 +0.4
240,320 - CCNA_00223 0.58 -0.1
240,320 - CCNA_00223 0.58 -1.5
240,326 - CCNA_00223 0.58 -0.5
240,326 - CCNA_00223 0.58 -0.2
240,326 - CCNA_00223 0.58 +0.2
240,326 - CCNA_00223 0.58 -2.5
240,397 + CCNA_00223 0.67 +0.2
240,402 + CCNA_00223 0.68 +0.4
240,407 + CCNA_00223 0.69 +0.4
240,407 + CCNA_00223 0.69 +0.7
240,410 - CCNA_00223 0.69 -0.4
240,410 - CCNA_00223 0.69 -0.6
240,424 + CCNA_00223 0.71 -0.6
240,430 - CCNA_00223 0.72 -0.3
240,431 - CCNA_00223 0.72 -0.5
240,440 + CCNA_00223 0.73 -0.0
240,440 + CCNA_00223 0.73 -0.8
240,456 + CCNA_00223 0.75 -0.3
240,456 + CCNA_00223 0.75 -0.4
240,468 + CCNA_00223 0.77 +0.4
240,468 + CCNA_00223 0.77 -0.3
240,468 + CCNA_00223 0.77 +0.6
240,468 + CCNA_00223 0.77 -0.3
240,498 + CCNA_00223 0.80 +0.0
240,506 - CCNA_00223 0.81 -0.0
240,506 - CCNA_00223 0.81 -1.0
240,511 - CCNA_00223 0.82 +0.2
240,511 - CCNA_00223 0.82 +0.1
240,534 - CCNA_00223 0.85 -1.3
240,539 - CCNA_00223 0.86 -0.3
240,575 + -1.9
240,615 + -0.6
240,682 - +0.5
240,682 - +0.1
240,702 + -1.0
240,702 + -0.4
240,702 + +0.5
240,707 + +0.1
240,710 - +0.1
240,788 - +0.1
240,804 + -0.9
240,812 - +0.1
240,822 - +0.2
240,822 - +0.5
240,827 - +0.5
240,840 + -0.1
240,841 - +0.1
240,848 - +0.1
240,848 - -0.5

Or see this region's nucleotide sequence