Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00197

Experiment: PYE with CHIR-090 4 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00196 and CCNA_00197 are separated by 589 nucleotidesCCNA_00197 and CCNA_00198 overlap by 4 nucleotidesCCNA_00198 and CCNA_00199 are separated by 130 nucleotides CCNA_00196: CCNA_00196 - 3-isopropylmalate dehydratase large subunit, at 209,092 to 210,531 _00196 CCNA_00197: CCNA_00197 - LSU ribosomal protein L19P, at 211,121 to 211,522 _00197 CCNA_00198: CCNA_00198 - tRNA (guanine-N1) -methyltransferase, at 211,519 to 212,256 _00198 CCNA_00199: CCNA_00199 - TadG/vWA-family protein, at 212,387 to 214,267 _00199 Position (kb) 211 212Strain fitness (log2 ratio) -2 -1 0 1at 210.123 kb on + strand, within CCNA_00196at 210.125 kb on + strand, within CCNA_00196at 210.162 kb on - strand, within CCNA_00196at 210.175 kb on + strand, within CCNA_00196at 210.180 kb on + strand, within CCNA_00196at 210.180 kb on + strand, within CCNA_00196at 210.180 kb on + strand, within CCNA_00196at 210.193 kb on - strand, within CCNA_00196at 210.214 kb on - strand, within CCNA_00196at 210.318 kb on + strand, within CCNA_00196at 210.319 kb on + strand, within CCNA_00196at 210.322 kb on - strand, within CCNA_00196at 210.327 kb on - strand, within CCNA_00196at 210.358 kb on - strand, within CCNA_00196at 210.369 kb on - strand, within CCNA_00196at 210.374 kb on - strand, within CCNA_00196at 210.381 kb on + strand, within CCNA_00196at 210.381 kb on + strand, within CCNA_00196at 210.412 kb on + strandat 210.414 kb on + strandat 210.420 kb on - strandat 210.429 kb on + strandat 210.437 kb on - strandat 210.442 kb on + strandat 210.455 kb on - strandat 210.460 kb on - strandat 210.505 kb on - strandat 210.505 kb on - strandat 210.505 kb on - strandat 210.640 kb on - strandat 210.662 kb on - strandat 210.709 kb on + strandat 210.717 kb on - strandat 210.717 kb on - strandat 210.748 kb on - strandat 210.838 kb on + strandat 210.849 kb on + strandat 210.854 kb on + strandat 210.859 kb on + strandat 210.867 kb on - strandat 210.867 kb on - strandat 210.867 kb on - strandat 210.867 kb on - strandat 210.912 kb on + strandat 210.912 kb on + strandat 210.913 kb on + strandat 210.973 kb on + strandat 210.981 kb on - strandat 211.001 kb on + strandat 211.002 kb on + strandat 211.031 kb on + strandat 211.089 kb on - strandat 211.118 kb on + strandat 211.118 kb on + strandat 211.119 kb on - strandat 211.126 kb on - strandat 211.191 kb on - strand, within CCNA_00197at 211.211 kb on - strand, within CCNA_00197at 211.561 kb on - strandat 212.288 kb on - strandat 212.288 kb on - strandat 212.293 kb on + strandat 212.295 kb on - strandat 212.295 kb on - strandat 212.316 kb on - strandat 212.325 kb on + strandat 212.377 kb on + strandat 212.382 kb on + strandat 212.382 kb on + strandat 212.382 kb on + strandat 212.398 kb on + strandat 212.409 kb on + strandat 212.415 kb on + strandat 212.423 kb on - strandat 212.448 kb on + strandat 212.464 kb on - strandat 212.492 kb on + strandat 212.500 kb on - strandat 212.520 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
remove
210,123 + CCNA_00196 0.72 -0.4
210,125 + CCNA_00196 0.72 -0.2
210,162 - CCNA_00196 0.74 -0.0
210,175 + CCNA_00196 0.75 -1.5
210,180 + CCNA_00196 0.76 -0.1
210,180 + CCNA_00196 0.76 +0.2
210,180 + CCNA_00196 0.76 -0.1
210,193 - CCNA_00196 0.76 +1.4
210,214 - CCNA_00196 0.78 -0.9
210,318 + CCNA_00196 0.85 +0.5
210,319 + CCNA_00196 0.85 +0.3
210,322 - CCNA_00196 0.85 -1.0
210,327 - CCNA_00196 0.86 -0.2
210,358 - CCNA_00196 0.88 +0.4
210,369 - CCNA_00196 0.89 +0.1
210,374 - CCNA_00196 0.89 -0.4
210,381 + CCNA_00196 0.90 +0.0
210,381 + CCNA_00196 0.90 +0.3
210,412 + -1.4
210,414 + -2.5
210,420 - +1.4
210,429 + -0.4
210,437 - -0.2
210,442 + -1.2
210,455 - -0.1
210,460 - -0.6
210,505 - -0.6
210,505 - +0.2
210,505 - -0.0
210,640 - +0.9
210,662 - +1.4
210,709 + -0.4
210,717 - +0.4
210,717 - +0.4
210,748 - +0.4
210,838 + +0.4
210,849 + +0.3
210,854 + +0.0
210,859 + -0.2
210,867 - -2.2
210,867 - +0.5
210,867 - +0.2
210,867 - +0.0
210,912 + -0.5
210,912 + +0.3
210,913 + +0.2
210,973 + -0.6
210,981 - +0.3
211,001 + +1.7
211,002 + +0.2
211,031 + +0.4
211,089 - -0.2
211,118 + +0.4
211,118 + -0.0
211,119 - +0.2
211,126 - +0.2
211,191 - CCNA_00197 0.17 -0.5
211,211 - CCNA_00197 0.22 -1.2
211,561 - +0.6
212,288 - +0.8
212,288 - +0.3
212,293 + -2.3
212,295 - +0.1
212,295 - -0.1
212,316 - +0.4
212,325 + +0.3
212,377 + -0.5
212,382 + -0.2
212,382 + +0.2
212,382 + -0.1
212,398 + -0.0
212,409 + -0.6
212,415 + +1.0
212,423 - +0.4
212,448 + +0.4
212,464 - -1.2
212,492 + +0.1
212,500 - -0.1
212,520 + +0.7

Or see this region's nucleotide sequence