Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00190

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00188 and CCNA_00189 are separated by 143 nucleotidesCCNA_00189 and CCNA_00190 are separated by 1 nucleotidesCCNA_00190 and CCNA_00191 are separated by 125 nucleotidesCCNA_00191 and CCNA_00192 are separated by 0 nucleotides CCNA_00188: CCNA_00188 - ABC transporter ATP-binding protein, at 202,763 to 203,725 _00188 CCNA_00189: CCNA_00189 - zinc-finger domain protein, at 203,869 to 204,135 _00189 CCNA_00190: CCNA_00190 - acyl-CoA hydrolase, at 204,137 to 204,571 _00190 CCNA_00191: CCNA_00191 - N-acetylglutamate synthase domain protein, at 204,697 to 205,173 _00191 CCNA_00192: CCNA_00192 - long-chain-fatty-acid--CoA ligase, at 205,174 to 206,793 _00192 Position (kb) 204 205Strain fitness (log2 ratio) -2 -1 0 1at 203.197 kb on + strand, within CCNA_00188at 203.205 kb on - strand, within CCNA_00188at 203.277 kb on - strand, within CCNA_00188at 203.332 kb on + strand, within CCNA_00188at 203.340 kb on - strand, within CCNA_00188at 203.348 kb on - strand, within CCNA_00188at 203.370 kb on + strand, within CCNA_00188at 203.378 kb on - strand, within CCNA_00188at 203.396 kb on - strand, within CCNA_00188at 203.427 kb on - strand, within CCNA_00188at 203.451 kb on - strand, within CCNA_00188at 203.460 kb on - strand, within CCNA_00188at 203.460 kb on - strand, within CCNA_00188at 203.510 kb on + strand, within CCNA_00188at 203.530 kb on - strand, within CCNA_00188at 203.631 kb on + strandat 203.639 kb on - strandat 203.644 kb on - strandat 203.669 kb on - strandat 203.672 kb on + strandat 203.679 kb on + strandat 203.679 kb on + strandat 203.684 kb on + strandat 203.687 kb on - strandat 203.687 kb on - strandat 203.687 kb on - strandat 203.687 kb on - strandat 203.687 kb on - strandat 203.697 kb on - strandat 203.731 kb on + strandat 203.731 kb on + strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.772 kb on + strandat 203.772 kb on + strandat 203.775 kb on - strandat 203.810 kb on + strandat 203.818 kb on - strandat 203.818 kb on - strandat 203.818 kb on - strandat 203.839 kb on - strandat 203.927 kb on - strand, within CCNA_00189at 204.008 kb on + strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.094 kb on + strand, within CCNA_00189at 204.389 kb on + strand, within CCNA_00190at 204.392 kb on - strand, within CCNA_00190at 204.452 kb on - strand, within CCNA_00190at 204.469 kb on - strand, within CCNA_00190at 204.504 kb on - strand, within CCNA_00190at 204.526 kb on - strand, within CCNA_00190at 204.565 kb on + strandat 204.579 kb on - strandat 204.581 kb on + strandat 204.668 kb on + strandat 204.693 kb on - strandat 204.721 kb on - strandat 204.740 kb on - strandat 204.761 kb on - strand, within CCNA_00191at 204.777 kb on + strand, within CCNA_00191at 204.800 kb on - strand, within CCNA_00191at 204.844 kb on - strand, within CCNA_00191at 204.844 kb on - strand, within CCNA_00191at 204.844 kb on - strand, within CCNA_00191at 204.896 kb on + strand, within CCNA_00191at 204.906 kb on + strand, within CCNA_00191at 204.914 kb on - strand, within CCNA_00191at 204.956 kb on - strand, within CCNA_00191at 204.956 kb on - strand, within CCNA_00191at 204.967 kb on + strand, within CCNA_00191at 204.976 kb on - strand, within CCNA_00191at 204.985 kb on + strand, within CCNA_00191at 205.036 kb on + strand, within CCNA_00191at 205.038 kb on - strand, within CCNA_00191at 205.039 kb on + strand, within CCNA_00191at 205.047 kb on + strand, within CCNA_00191at 205.089 kb on + strand, within CCNA_00191at 205.170 kb on + strandat 205.204 kb on + strandat 205.209 kb on + strandat 205.319 kb on + strandat 205.376 kb on + strand, within CCNA_00192at 205.376 kb on + strand, within CCNA_00192at 205.379 kb on - strand, within CCNA_00192at 205.411 kb on + strand, within CCNA_00192at 205.419 kb on - strand, within CCNA_00192at 205.459 kb on + strand, within CCNA_00192at 205.463 kb on - strand, within CCNA_00192at 205.504 kb on + strand, within CCNA_00192

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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203,197 + CCNA_00188 0.45 -0.5
203,205 - CCNA_00188 0.46 +0.5
203,277 - CCNA_00188 0.53 +0.1
203,332 + CCNA_00188 0.59 +0.1
203,340 - CCNA_00188 0.60 +0.2
203,348 - CCNA_00188 0.61 -0.0
203,370 + CCNA_00188 0.63 -0.4
203,378 - CCNA_00188 0.64 -0.4
203,396 - CCNA_00188 0.66 +0.3
203,427 - CCNA_00188 0.69 +0.3
203,451 - CCNA_00188 0.71 +0.8
203,460 - CCNA_00188 0.72 +0.5
203,460 - CCNA_00188 0.72 +0.6
203,510 + CCNA_00188 0.78 +0.5
203,530 - CCNA_00188 0.80 -0.6
203,631 + +0.9
203,639 - -0.7
203,644 - +0.4
203,669 - +0.2
203,672 + +0.0
203,679 + -0.8
203,679 + -0.6
203,684 + +0.9
203,687 - +0.4
203,687 - -0.1
203,687 - +0.3
203,687 - +1.3
203,687 - +1.1
203,697 - +1.0
203,731 + +1.0
203,731 + +0.4
203,739 - +0.1
203,739 - +0.0
203,772 + -0.9
203,772 + +1.4
203,775 - -0.2
203,810 + +0.8
203,818 - -2.0
203,818 - -0.1
203,818 - +0.1
203,839 - +0.1
203,927 - CCNA_00189 0.22 -0.7
204,008 + CCNA_00189 0.52 +0.3
204,016 - CCNA_00189 0.55 -0.5
204,016 - CCNA_00189 0.55 -0.1
204,016 - CCNA_00189 0.55 -0.2
204,016 - CCNA_00189 0.55 +0.1
204,094 + CCNA_00189 0.84 +0.2
204,389 + CCNA_00190 0.58 +0.4
204,392 - CCNA_00190 0.59 -1.0
204,452 - CCNA_00190 0.72 +1.6
204,469 - CCNA_00190 0.76 -0.5
204,504 - CCNA_00190 0.84 +0.8
204,526 - CCNA_00190 0.89 -0.9
204,565 + +0.3
204,579 - -1.0
204,581 + +0.4
204,668 + +0.2
204,693 - -0.4
204,721 - -0.5
204,740 - +0.2
204,761 - CCNA_00191 0.13 -0.7
204,777 + CCNA_00191 0.17 +0.9
204,800 - CCNA_00191 0.22 -0.2
204,844 - CCNA_00191 0.31 -1.0
204,844 - CCNA_00191 0.31 -0.3
204,844 - CCNA_00191 0.31 -0.2
204,896 + CCNA_00191 0.42 +0.6
204,906 + CCNA_00191 0.44 -0.9
204,914 - CCNA_00191 0.45 +0.1
204,956 - CCNA_00191 0.54 -1.4
204,956 - CCNA_00191 0.54 -0.9
204,967 + CCNA_00191 0.57 +0.2
204,976 - CCNA_00191 0.58 -0.4
204,985 + CCNA_00191 0.60 +0.3
205,036 + CCNA_00191 0.71 +0.8
205,038 - CCNA_00191 0.71 -0.2
205,039 + CCNA_00191 0.72 -0.4
205,047 + CCNA_00191 0.73 +1.0
205,089 + CCNA_00191 0.82 +0.6
205,170 + +0.5
205,204 + -1.0
205,209 + +0.3
205,319 + +1.3
205,376 + CCNA_00192 0.12 +0.1
205,376 + CCNA_00192 0.12 -0.1
205,379 - CCNA_00192 0.13 -0.4
205,411 + CCNA_00192 0.15 -0.0
205,419 - CCNA_00192 0.15 -1.3
205,459 + CCNA_00192 0.18 +0.4
205,463 - CCNA_00192 0.18 -1.7
205,504 + CCNA_00192 0.20 -0.4

Or see this region's nucleotide sequence