Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00155

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00153 and CCNA_00154 overlap by 61 nucleotidesCCNA_00154 and CCNA_00155 are separated by 177 nucleotidesCCNA_00155 and CCNA_00156 are separated by 132 nucleotidesCCNA_00156 and CCNA_00157 are separated by 70 nucleotides CCNA_00153: CCNA_00153 - adenine nucleotide exchange factor GrpE, at 162,409 to 163,035 _00153 CCNA_00154: CCNA_00154 - hypothetical protein, at 162,975 to 163,235 _00154 CCNA_00155: CCNA_00155 - DNA polymerase III, beta chain, at 163,413 to 164,531 _00155 CCNA_00156: CCNA_00156 - ArsR-family transcriptional regulator, at 164,664 to 164,951 _00156 CCNA_00157: CCNA_00157 - glyoxalase family protein, at 165,022 to 165,393 _00157 Position (kb) 163 164 165Strain fitness (log2 ratio) -2 -1 0 1at 162.509 kb on - strand, within CCNA_00153at 162.944 kb on + strand, within CCNA_00153at 162.967 kb on + strand, within CCNA_00153at 162.972 kb on + strand, within CCNA_00153at 162.999 kb on + strandat 163.029 kb on + strandat 163.092 kb on + strand, within CCNA_00154at 163.104 kb on + strand, within CCNA_00154at 163.104 kb on + strand, within CCNA_00154at 163.105 kb on + strand, within CCNA_00154at 163.105 kb on + strand, within CCNA_00154at 163.112 kb on - strand, within CCNA_00154at 163.112 kb on - strand, within CCNA_00154at 163.113 kb on - strand, within CCNA_00154at 163.158 kb on + strand, within CCNA_00154at 163.158 kb on + strand, within CCNA_00154at 163.165 kb on + strand, within CCNA_00154at 163.165 kb on + strand, within CCNA_00154at 163.166 kb on - strand, within CCNA_00154at 163.171 kb on - strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.217 kb on - strandat 163.217 kb on - strandat 163.217 kb on - strandat 163.218 kb on + strandat 163.305 kb on - strandat 163.307 kb on + strandat 163.350 kb on + strandat 163.350 kb on + strandat 163.350 kb on + strandat 163.363 kb on - strandat 163.365 kb on + strandat 163.365 kb on + strandat 163.373 kb on - strandat 164.525 kb on + strandat 164.612 kb on + strandat 164.612 kb on + strandat 164.619 kb on + strandat 164.619 kb on + strandat 164.619 kb on + strandat 164.645 kb on - strandat 164.683 kb on + strandat 164.690 kb on - strandat 164.690 kb on - strandat 164.694 kb on + strand, within CCNA_00156at 164.696 kb on + strand, within CCNA_00156at 164.696 kb on + strand, within CCNA_00156at 164.702 kb on - strand, within CCNA_00156at 164.703 kb on + strand, within CCNA_00156at 164.703 kb on + strand, within CCNA_00156at 164.704 kb on - strand, within CCNA_00156at 164.711 kb on - strand, within CCNA_00156at 164.711 kb on - strand, within CCNA_00156at 164.712 kb on + strand, within CCNA_00156at 164.725 kb on + strand, within CCNA_00156at 164.730 kb on + strand, within CCNA_00156at 164.730 kb on + strand, within CCNA_00156at 164.730 kb on + strand, within CCNA_00156at 164.738 kb on - strand, within CCNA_00156at 164.738 kb on - strand, within CCNA_00156at 164.738 kb on - strand, within CCNA_00156at 164.781 kb on + strand, within CCNA_00156at 164.788 kb on + strand, within CCNA_00156at 164.793 kb on + strand, within CCNA_00156at 164.796 kb on - strand, within CCNA_00156at 164.801 kb on - strand, within CCNA_00156at 164.803 kb on + strand, within CCNA_00156at 164.816 kb on + strand, within CCNA_00156at 164.816 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.876 kb on - strand, within CCNA_00156at 164.876 kb on - strand, within CCNA_00156at 164.876 kb on - strand, within CCNA_00156at 164.912 kb on - strand, within CCNA_00156at 164.926 kb on - strandat 164.958 kb on + strandat 165.018 kb on + strandat 165.026 kb on - strandat 165.036 kb on - strandat 165.036 kb on - strandat 165.069 kb on + strand, within CCNA_00157at 165.077 kb on - strand, within CCNA_00157at 165.080 kb on + strand, within CCNA_00157at 165.091 kb on + strand, within CCNA_00157at 165.091 kb on + strand, within CCNA_00157at 165.099 kb on - strand, within CCNA_00157at 165.183 kb on - strand, within CCNA_00157at 165.243 kb on - strand, within CCNA_00157at 165.270 kb on + strand, within CCNA_00157at 165.278 kb on + strand, within CCNA_00157at 165.297 kb on + strand, within CCNA_00157at 165.303 kb on - strand, within CCNA_00157at 165.321 kb on - strand, within CCNA_00157at 165.330 kb on + strand, within CCNA_00157at 165.332 kb on - strand, within CCNA_00157at 165.362 kb on + strandat 165.363 kb on - strandat 165.377 kb on + strandat 165.385 kb on - strandat 165.466 kb on - strandat 165.506 kb on - strandat 165.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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162,509 - CCNA_00153 0.16 -0.6
162,944 + CCNA_00153 0.85 +0.1
162,967 + CCNA_00153 0.89 +0.0
162,972 + CCNA_00153 0.90 -0.2
162,999 + -0.5
163,029 + +0.1
163,092 + CCNA_00154 0.45 +1.0
163,104 + CCNA_00154 0.49 -0.8
163,104 + CCNA_00154 0.49 +0.2
163,105 + CCNA_00154 0.50 +0.2
163,105 + CCNA_00154 0.50 +0.2
163,112 - CCNA_00154 0.52 +0.5
163,112 - CCNA_00154 0.52 -1.4
163,113 - CCNA_00154 0.53 +0.3
163,158 + CCNA_00154 0.70 +0.9
163,158 + CCNA_00154 0.70 +1.0
163,165 + CCNA_00154 0.73 -1.6
163,165 + CCNA_00154 0.73 -0.2
163,166 - CCNA_00154 0.73 +0.2
163,171 - CCNA_00154 0.75 +0.5
163,209 + CCNA_00154 0.90 +1.1
163,209 + CCNA_00154 0.90 +1.7
163,217 - +0.4
163,217 - +0.4
163,217 - +0.8
163,218 + -0.2
163,305 - -0.3
163,307 + -0.1
163,350 + -1.2
163,350 + +0.9
163,350 + -0.5
163,363 - -0.1
163,365 + +0.9
163,365 + +1.4
163,373 - +0.3
164,525 + +0.0
164,612 + +0.9
164,612 + +1.7
164,619 + -0.2
164,619 + -0.2
164,619 + +0.7
164,645 - +0.2
164,683 + +0.0
164,690 - -0.9
164,690 - +0.0
164,694 + CCNA_00156 0.10 +0.5
164,696 + CCNA_00156 0.11 -0.4
164,696 + CCNA_00156 0.11 -0.4
164,702 - CCNA_00156 0.13 +0.4
164,703 + CCNA_00156 0.14 -0.6
164,703 + CCNA_00156 0.14 +0.9
164,704 - CCNA_00156 0.14 +0.1
164,711 - CCNA_00156 0.16 +0.5
164,711 - CCNA_00156 0.16 -0.3
164,712 + CCNA_00156 0.17 +0.1
164,725 + CCNA_00156 0.21 +1.1
164,730 + CCNA_00156 0.23 -0.6
164,730 + CCNA_00156 0.23 -0.5
164,730 + CCNA_00156 0.23 -0.1
164,738 - CCNA_00156 0.26 +0.2
164,738 - CCNA_00156 0.26 +0.1
164,738 - CCNA_00156 0.26 +0.5
164,781 + CCNA_00156 0.41 +1.0
164,788 + CCNA_00156 0.43 +0.5
164,793 + CCNA_00156 0.45 -0.2
164,796 - CCNA_00156 0.46 +1.2
164,801 - CCNA_00156 0.48 -0.1
164,803 + CCNA_00156 0.48 +0.6
164,816 + CCNA_00156 0.53 +1.0
164,816 + CCNA_00156 0.53 -1.2
164,868 + CCNA_00156 0.71 -0.2
164,868 + CCNA_00156 0.71 +1.1
164,868 + CCNA_00156 0.71 -0.0
164,868 + CCNA_00156 0.71 -0.7
164,868 + CCNA_00156 0.71 -0.6
164,876 - CCNA_00156 0.74 +0.4
164,876 - CCNA_00156 0.74 -0.2
164,876 - CCNA_00156 0.74 +0.2
164,912 - CCNA_00156 0.86 -0.9
164,926 - -0.1
164,958 + +0.2
165,018 + +0.4
165,026 - +0.6
165,036 - -1.1
165,036 - -0.6
165,069 + CCNA_00157 0.13 +0.1
165,077 - CCNA_00157 0.15 -1.5
165,080 + CCNA_00157 0.16 -0.0
165,091 + CCNA_00157 0.19 +0.9
165,091 + CCNA_00157 0.19 -0.4
165,099 - CCNA_00157 0.21 +0.5
165,183 - CCNA_00157 0.43 -0.9
165,243 - CCNA_00157 0.59 -0.4
165,270 + CCNA_00157 0.67 +0.5
165,278 + CCNA_00157 0.69 +0.9
165,297 + CCNA_00157 0.74 +0.4
165,303 - CCNA_00157 0.76 -0.5
165,321 - CCNA_00157 0.80 -0.4
165,330 + CCNA_00157 0.83 +0.1
165,332 - CCNA_00157 0.83 -2.1
165,362 + +0.3
165,363 - +0.0
165,377 + +0.5
165,385 - -1.7
165,466 - +0.5
165,506 - +0.3
165,506 - -0.1

Or see this region's nucleotide sequence