Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00094

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00092 and CCNA_00093 are separated by 98 nucleotidesCCNA_00093 and CCNA_00094 are separated by 72 nucleotidesCCNA_00094 and CCNA_00095 are separated by 103 nucleotides CCNA_00092: CCNA_00092 - short chain dehydrogenase, at 104,039 to 104,929 _00092 CCNA_00093: CCNA_00093 - hypothetical protein, at 105,028 to 105,237 _00093 CCNA_00094: CCNA_00094 - WecG/TagA-family glycosyltransferase HfsJ, at 105,310 to 106,230 _00094 CCNA_00095: CCNA_00095 - quinone oxidoreductase, at 106,334 to 107,332 _00095 Position (kb) 105 106 107Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 104.338 kb on + strand, within CCNA_00092at 104.356 kb on + strand, within CCNA_00092at 104.382 kb on - strand, within CCNA_00092at 104.382 kb on - strand, within CCNA_00092at 104.462 kb on - strand, within CCNA_00092at 104.466 kb on + strand, within CCNA_00092at 104.471 kb on + strand, within CCNA_00092at 104.479 kb on - strand, within CCNA_00092at 104.479 kb on - strand, within CCNA_00092at 104.486 kb on - strand, within CCNA_00092at 104.487 kb on - strand, within CCNA_00092at 104.516 kb on + strand, within CCNA_00092at 104.522 kb on - strand, within CCNA_00092at 104.550 kb on + strand, within CCNA_00092at 104.557 kb on - strand, within CCNA_00092at 104.559 kb on - strand, within CCNA_00092at 104.570 kb on + strand, within CCNA_00092at 104.586 kb on + strand, within CCNA_00092at 104.604 kb on - strand, within CCNA_00092at 104.629 kb on + strand, within CCNA_00092at 104.629 kb on + strand, within CCNA_00092at 104.632 kb on - strand, within CCNA_00092at 104.637 kb on - strand, within CCNA_00092at 104.637 kb on - strand, within CCNA_00092at 104.637 kb on - strand, within CCNA_00092at 104.637 kb on - strand, within CCNA_00092at 104.676 kb on + strand, within CCNA_00092at 104.681 kb on + strand, within CCNA_00092at 104.689 kb on - strand, within CCNA_00092at 104.697 kb on - strand, within CCNA_00092at 104.708 kb on - strand, within CCNA_00092at 104.711 kb on + strand, within CCNA_00092at 104.712 kb on + strand, within CCNA_00092at 104.712 kb on + strand, within CCNA_00092at 104.719 kb on - strand, within CCNA_00092at 104.720 kb on - strand, within CCNA_00092at 104.745 kb on + strand, within CCNA_00092at 104.770 kb on + strand, within CCNA_00092at 104.770 kb on + strand, within CCNA_00092at 104.778 kb on - strand, within CCNA_00092at 104.783 kb on + strand, within CCNA_00092at 104.785 kb on + strand, within CCNA_00092at 104.785 kb on + strand, within CCNA_00092at 104.793 kb on - strand, within CCNA_00092at 104.793 kb on - strand, within CCNA_00092at 104.854 kb on + strandat 104.871 kb on - strandat 104.871 kb on - strandat 104.875 kb on + strandat 104.885 kb on + strandat 104.893 kb on - strandat 104.920 kb on - strandat 104.969 kb on - strandat 104.998 kb on + strandat 105.006 kb on - strandat 105.080 kb on + strand, within CCNA_00093at 105.104 kb on - strand, within CCNA_00093at 105.113 kb on + strand, within CCNA_00093at 105.131 kb on + strand, within CCNA_00093at 105.131 kb on + strand, within CCNA_00093at 105.131 kb on + strand, within CCNA_00093at 105.131 kb on + strand, within CCNA_00093at 105.131 kb on + strand, within CCNA_00093at 105.131 kb on + strand, within CCNA_00093at 105.136 kb on + strand, within CCNA_00093at 105.136 kb on + strand, within CCNA_00093at 105.136 kb on + strand, within CCNA_00093at 105.139 kb on - strand, within CCNA_00093at 105.139 kb on - strand, within CCNA_00093at 105.139 kb on - strand, within CCNA_00093at 105.149 kb on - strand, within CCNA_00093at 105.149 kb on - strand, within CCNA_00093at 105.156 kb on + strand, within CCNA_00093at 105.165 kb on - strand, within CCNA_00093at 105.165 kb on - strand, within CCNA_00093at 105.167 kb on + strand, within CCNA_00093at 105.203 kb on + strand, within CCNA_00093at 105.204 kb on + strand, within CCNA_00093at 105.337 kb on + strandat 105.340 kb on - strandat 105.345 kb on - strandat 105.389 kb on + strandat 105.397 kb on - strandat 105.397 kb on - strandat 105.415 kb on + strand, within CCNA_00094at 105.447 kb on + strand, within CCNA_00094at 105.487 kb on - strand, within CCNA_00094at 105.493 kb on + strand, within CCNA_00094at 105.496 kb on + strand, within CCNA_00094at 105.502 kb on + strand, within CCNA_00094at 105.504 kb on + strand, within CCNA_00094at 105.536 kb on + strand, within CCNA_00094at 105.538 kb on + strand, within CCNA_00094at 105.586 kb on - strand, within CCNA_00094at 105.602 kb on + strand, within CCNA_00094at 105.602 kb on - strand, within CCNA_00094at 105.604 kb on - strand, within CCNA_00094at 105.620 kb on + strand, within CCNA_00094at 105.628 kb on - strand, within CCNA_00094at 105.703 kb on + strand, within CCNA_00094at 105.703 kb on + strand, within CCNA_00094at 105.711 kb on - strand, within CCNA_00094at 105.723 kb on - strand, within CCNA_00094at 105.754 kb on - strand, within CCNA_00094at 105.769 kb on + strand, within CCNA_00094at 105.769 kb on + strand, within CCNA_00094at 105.769 kb on + strand, within CCNA_00094at 105.769 kb on + strand, within CCNA_00094at 105.850 kb on + strand, within CCNA_00094at 105.856 kb on + strand, within CCNA_00094at 105.858 kb on - strand, within CCNA_00094at 105.858 kb on - strand, within CCNA_00094at 105.859 kb on + strand, within CCNA_00094at 105.866 kb on - strand, within CCNA_00094at 105.877 kb on + strand, within CCNA_00094at 105.877 kb on + strand, within CCNA_00094at 105.880 kb on - strand, within CCNA_00094at 105.885 kb on - strand, within CCNA_00094at 105.956 kb on + strand, within CCNA_00094at 105.966 kb on + strand, within CCNA_00094at 105.977 kb on + strand, within CCNA_00094at 105.982 kb on + strand, within CCNA_00094at 105.982 kb on - strand, within CCNA_00094at 106.014 kb on + strand, within CCNA_00094at 106.014 kb on + strand, within CCNA_00094at 106.014 kb on + strand, within CCNA_00094at 106.014 kb on + strand, within CCNA_00094at 106.014 kb on + strand, within CCNA_00094at 106.014 kb on + strand, within CCNA_00094at 106.022 kb on - strand, within CCNA_00094at 106.022 kb on - strand, within CCNA_00094at 106.022 kb on - strand, within CCNA_00094at 106.022 kb on - strand, within CCNA_00094at 106.022 kb on - strand, within CCNA_00094at 106.022 kb on - strand, within CCNA_00094at 106.062 kb on + strand, within CCNA_00094at 106.118 kb on + strand, within CCNA_00094at 106.136 kb on - strand, within CCNA_00094at 106.136 kb on - strand, within CCNA_00094at 106.143 kb on + strandat 106.151 kb on - strandat 106.151 kb on - strandat 106.151 kb on - strandat 106.169 kb on - strandat 106.193 kb on + strandat 106.197 kb on + strandat 106.205 kb on - strandat 106.240 kb on + strandat 106.242 kb on + strandat 106.248 kb on - strandat 106.330 kb on + strandat 106.341 kb on + strandat 106.352 kb on - strandat 106.353 kb on + strandat 106.399 kb on - strandat 106.406 kb on + strandat 106.414 kb on - strandat 106.452 kb on + strand, within CCNA_00095at 106.460 kb on - strand, within CCNA_00095at 106.478 kb on + strand, within CCNA_00095at 106.478 kb on + strand, within CCNA_00095at 106.485 kb on + strand, within CCNA_00095at 106.492 kb on + strand, within CCNA_00095at 106.518 kb on + strand, within CCNA_00095at 106.518 kb on + strand, within CCNA_00095at 106.518 kb on + strand, within CCNA_00095at 106.518 kb on + strand, within CCNA_00095at 106.520 kb on + strand, within CCNA_00095at 106.526 kb on - strand, within CCNA_00095at 106.526 kb on - strand, within CCNA_00095at 106.526 kb on - strand, within CCNA_00095at 106.526 kb on - strand, within CCNA_00095at 106.526 kb on - strand, within CCNA_00095at 106.526 kb on - strand, within CCNA_00095at 106.526 kb on - strand, within CCNA_00095at 106.547 kb on + strand, within CCNA_00095at 106.555 kb on + strand, within CCNA_00095at 106.625 kb on - strand, within CCNA_00095at 106.650 kb on - strand, within CCNA_00095at 106.650 kb on - strand, within CCNA_00095at 106.678 kb on + strand, within CCNA_00095at 106.678 kb on + strand, within CCNA_00095at 106.688 kb on - strand, within CCNA_00095at 106.704 kb on + strand, within CCNA_00095at 106.712 kb on - strand, within CCNA_00095at 106.712 kb on - strand, within CCNA_00095at 106.767 kb on - strand, within CCNA_00095at 106.767 kb on - strand, within CCNA_00095at 106.842 kb on + strand, within CCNA_00095at 106.853 kb on + strand, within CCNA_00095at 106.853 kb on + strand, within CCNA_00095at 106.856 kb on - strand, within CCNA_00095at 106.856 kb on - strand, within CCNA_00095at 106.856 kb on - strand, within CCNA_00095at 106.856 kb on - strand, within CCNA_00095at 106.856 kb on - strand, within CCNA_00095at 106.932 kb on + strand, within CCNA_00095at 106.949 kb on + strand, within CCNA_00095at 106.949 kb on + strand, within CCNA_00095at 106.950 kb on - strand, within CCNA_00095at 106.957 kb on - strand, within CCNA_00095at 106.964 kb on + strand, within CCNA_00095at 106.964 kb on + strand, within CCNA_00095at 106.969 kb on + strand, within CCNA_00095at 106.972 kb on - strand, within CCNA_00095at 107.003 kb on + strand, within CCNA_00095at 107.037 kb on - strand, within CCNA_00095at 107.075 kb on - strand, within CCNA_00095at 107.091 kb on + strand, within CCNA_00095at 107.092 kb on + strand, within CCNA_00095at 107.102 kb on + strand, within CCNA_00095at 107.102 kb on + strand, within CCNA_00095at 107.107 kb on + strand, within CCNA_00095at 107.119 kb on + strand, within CCNA_00095at 107.126 kb on + strand, within CCNA_00095at 107.138 kb on - strand, within CCNA_00095at 107.141 kb on + strand, within CCNA_00095at 107.212 kb on + strand, within CCNA_00095at 107.220 kb on + strand, within CCNA_00095

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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104,338 + CCNA_00092 0.34 +0.1
104,356 + CCNA_00092 0.36 -0.7
104,382 - CCNA_00092 0.38 -0.2
104,382 - CCNA_00092 0.38 +0.3
104,462 - CCNA_00092 0.47 -0.0
104,466 + CCNA_00092 0.48 -0.7
104,471 + CCNA_00092 0.48 -0.2
104,479 - CCNA_00092 0.49 -0.2
104,479 - CCNA_00092 0.49 +1.3
104,486 - CCNA_00092 0.50 +0.0
104,487 - CCNA_00092 0.50 -0.9
104,516 + CCNA_00092 0.54 -0.4
104,522 - CCNA_00092 0.54 +0.1
104,550 + CCNA_00092 0.57 -1.0
104,557 - CCNA_00092 0.58 +0.7
104,559 - CCNA_00092 0.58 -0.9
104,570 + CCNA_00092 0.60 -1.2
104,586 + CCNA_00092 0.61 -1.3
104,604 - CCNA_00092 0.63 +0.3
104,629 + CCNA_00092 0.66 +0.7
104,629 + CCNA_00092 0.66 -2.9
104,632 - CCNA_00092 0.67 -1.9
104,637 - CCNA_00092 0.67 -1.7
104,637 - CCNA_00092 0.67 -0.3
104,637 - CCNA_00092 0.67 -0.4
104,637 - CCNA_00092 0.67 +0.2
104,676 + CCNA_00092 0.71 -2.5
104,681 + CCNA_00092 0.72 -0.3
104,689 - CCNA_00092 0.73 -0.6
104,697 - CCNA_00092 0.74 +0.2
104,708 - CCNA_00092 0.75 -0.1
104,711 + CCNA_00092 0.75 -1.4
104,712 + CCNA_00092 0.76 -2.0
104,712 + CCNA_00092 0.76 +0.3
104,719 - CCNA_00092 0.76 -0.3
104,720 - CCNA_00092 0.76 -0.3
104,745 + CCNA_00092 0.79 -0.7
104,770 + CCNA_00092 0.82 -2.0
104,770 + CCNA_00092 0.82 +0.2
104,778 - CCNA_00092 0.83 -0.1
104,783 + CCNA_00092 0.84 -1.5
104,785 + CCNA_00092 0.84 +0.2
104,785 + CCNA_00092 0.84 -0.3
104,793 - CCNA_00092 0.85 -0.3
104,793 - CCNA_00092 0.85 +0.1
104,854 + -1.5
104,871 - -0.1
104,871 - +0.3
104,875 + +0.8
104,885 + -0.7
104,893 - -0.2
104,920 - +0.2
104,969 - -0.1
104,998 + -1.6
105,006 - -0.5
105,080 + CCNA_00093 0.25 +0.4
105,104 - CCNA_00093 0.36 +0.3
105,113 + CCNA_00093 0.40 -1.0
105,131 + CCNA_00093 0.49 -2.7
105,131 + CCNA_00093 0.49 -0.6
105,131 + CCNA_00093 0.49 -0.7
105,131 + CCNA_00093 0.49 -0.0
105,131 + CCNA_00093 0.49 -0.3
105,131 + CCNA_00093 0.49 -0.9
105,136 + CCNA_00093 0.51 -0.8
105,136 + CCNA_00093 0.51 -1.5
105,136 + CCNA_00093 0.51 -1.6
105,139 - CCNA_00093 0.53 -0.2
105,139 - CCNA_00093 0.53 -0.1
105,139 - CCNA_00093 0.53 +0.5
105,149 - CCNA_00093 0.58 +0.6
105,149 - CCNA_00093 0.58 -0.2
105,156 + CCNA_00093 0.61 -0.5
105,165 - CCNA_00093 0.65 +0.3
105,165 - CCNA_00093 0.65 +0.3
105,167 + CCNA_00093 0.66 -0.6
105,203 + CCNA_00093 0.83 -0.2
105,204 + CCNA_00093 0.84 -0.5
105,337 + -1.4
105,340 - +0.1
105,345 - +0.2
105,389 + -1.5
105,397 - -0.7
105,397 - -0.0
105,415 + CCNA_00094 0.11 -0.5
105,447 + CCNA_00094 0.15 -0.9
105,487 - CCNA_00094 0.19 -0.2
105,493 + CCNA_00094 0.20 -0.0
105,496 + CCNA_00094 0.20 -0.8
105,502 + CCNA_00094 0.21 -2.2
105,504 + CCNA_00094 0.21 +0.4
105,536 + CCNA_00094 0.25 -0.8
105,538 + CCNA_00094 0.25 -0.5
105,586 - CCNA_00094 0.30 +1.5
105,602 + CCNA_00094 0.32 -0.4
105,602 - CCNA_00094 0.32 -0.5
105,604 - CCNA_00094 0.32 +0.0
105,620 + CCNA_00094 0.34 +0.1
105,628 - CCNA_00094 0.35 +0.5
105,703 + CCNA_00094 0.43 -1.0
105,703 + CCNA_00094 0.43 -0.5
105,711 - CCNA_00094 0.44 -0.2
105,723 - CCNA_00094 0.45 +0.4
105,754 - CCNA_00094 0.48 +0.6
105,769 + CCNA_00094 0.50 -0.6
105,769 + CCNA_00094 0.50 -1.5
105,769 + CCNA_00094 0.50 +0.5
105,769 + CCNA_00094 0.50 -1.3
105,850 + CCNA_00094 0.59 -0.4
105,856 + CCNA_00094 0.59 -0.2
105,858 - CCNA_00094 0.60 +0.7
105,858 - CCNA_00094 0.60 -0.0
105,859 + CCNA_00094 0.60 -0.7
105,866 - CCNA_00094 0.60 +0.1
105,877 + CCNA_00094 0.62 -2.4
105,877 + CCNA_00094 0.62 -0.7
105,880 - CCNA_00094 0.62 +1.3
105,885 - CCNA_00094 0.62 -0.9
105,956 + CCNA_00094 0.70 +0.3
105,966 + CCNA_00094 0.71 -2.5
105,977 + CCNA_00094 0.72 +0.2
105,982 + CCNA_00094 0.73 +0.7
105,982 - CCNA_00094 0.73 -0.6
106,014 + CCNA_00094 0.76 -0.2
106,014 + CCNA_00094 0.76 -0.2
106,014 + CCNA_00094 0.76 -0.7
106,014 + CCNA_00094 0.76 +0.1
106,014 + CCNA_00094 0.76 -0.0
106,014 + CCNA_00094 0.76 +0.0
106,022 - CCNA_00094 0.77 -1.3
106,022 - CCNA_00094 0.77 +0.5
106,022 - CCNA_00094 0.77 -0.2
106,022 - CCNA_00094 0.77 -1.2
106,022 - CCNA_00094 0.77 +0.3
106,022 - CCNA_00094 0.77 +0.0
106,062 + CCNA_00094 0.82 -0.7
106,118 + CCNA_00094 0.88 -1.2
106,136 - CCNA_00094 0.90 +0.4
106,136 - CCNA_00094 0.90 +0.2
106,143 + +0.1
106,151 - -0.2
106,151 - +0.8
106,151 - +0.5
106,169 - -0.3
106,193 + -0.3
106,197 + -0.1
106,205 - -0.2
106,240 + +0.1
106,242 + -0.1
106,248 - +0.3
106,330 + +0.1
106,341 + -0.1
106,352 - -0.3
106,353 + +0.4
106,399 - +1.5
106,406 + -0.3
106,414 - +0.6
106,452 + CCNA_00095 0.12 +0.3
106,460 - CCNA_00095 0.13 +0.5
106,478 + CCNA_00095 0.14 -0.1
106,478 + CCNA_00095 0.14 +0.2
106,485 + CCNA_00095 0.15 +0.7
106,492 + CCNA_00095 0.16 +0.5
106,518 + CCNA_00095 0.18 +0.2
106,518 + CCNA_00095 0.18 -0.7
106,518 + CCNA_00095 0.18 +0.4
106,518 + CCNA_00095 0.18 -2.1
106,520 + CCNA_00095 0.19 -1.4
106,526 - CCNA_00095 0.19 -1.2
106,526 - CCNA_00095 0.19 -0.5
106,526 - CCNA_00095 0.19 +0.1
106,526 - CCNA_00095 0.19 +0.1
106,526 - CCNA_00095 0.19 -1.2
106,526 - CCNA_00095 0.19 -0.7
106,526 - CCNA_00095 0.19 -0.8
106,547 + CCNA_00095 0.21 +0.1
106,555 + CCNA_00095 0.22 -0.8
106,625 - CCNA_00095 0.29 +0.3
106,650 - CCNA_00095 0.32 -0.1
106,650 - CCNA_00095 0.32 -0.6
106,678 + CCNA_00095 0.34 -2.7
106,678 + CCNA_00095 0.34 -1.4
106,688 - CCNA_00095 0.35 -0.1
106,704 + CCNA_00095 0.37 +0.0
106,712 - CCNA_00095 0.38 -0.3
106,712 - CCNA_00095 0.38 -0.8
106,767 - CCNA_00095 0.43 +0.3
106,767 - CCNA_00095 0.43 -0.1
106,842 + CCNA_00095 0.51 +0.1
106,853 + CCNA_00095 0.52 +0.1
106,853 + CCNA_00095 0.52 -1.0
106,856 - CCNA_00095 0.52 -0.5
106,856 - CCNA_00095 0.52 +0.3
106,856 - CCNA_00095 0.52 +0.3
106,856 - CCNA_00095 0.52 +0.2
106,856 - CCNA_00095 0.52 -0.1
106,932 + CCNA_00095 0.60 -0.1
106,949 + CCNA_00095 0.62 +0.1
106,949 + CCNA_00095 0.62 -2.2
106,950 - CCNA_00095 0.62 -0.5
106,957 - CCNA_00095 0.62 -0.2
106,964 + CCNA_00095 0.63 +2.0
106,964 + CCNA_00095 0.63 +0.3
106,969 + CCNA_00095 0.64 -0.2
106,972 - CCNA_00095 0.64 -1.1
107,003 + CCNA_00095 0.67 -1.3
107,037 - CCNA_00095 0.70 -0.1
107,075 - CCNA_00095 0.74 +0.4
107,091 + CCNA_00095 0.76 -0.0
107,092 + CCNA_00095 0.76 -2.1
107,102 + CCNA_00095 0.77 -1.5
107,102 + CCNA_00095 0.77 +0.9
107,107 + CCNA_00095 0.77 -0.9
107,119 + CCNA_00095 0.79 -0.2
107,126 + CCNA_00095 0.79 -0.1
107,138 - CCNA_00095 0.80 -0.3
107,141 + CCNA_00095 0.81 +2.2
107,212 + CCNA_00095 0.88 -2.0
107,220 + CCNA_00095 0.89 -0.9

Or see this region's nucleotide sequence