Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00055 and CCNA_00056 are separated by 45 nucleotides CCNA_00056 and CCNA_00057 are separated by 8 nucleotides CCNA_00057 and CCNA_00058 are separated by 3 nucleotides CCNA_00058 and CCNA_00059 are separated by 147 nucleotides
CCNA_00055: CCNA_00055 - ferric uptake regulation protein, at 58,201 to 58,608
_00055
CCNA_00056: CCNA_00056 - ribosomal-protein-S18-alanine acetyltransferase, at 58,654 to 59,106
_00056
CCNA_00057: CCNA_00057 - glycoprotease family protein, at 59,115 to 59,750
_00057
CCNA_00058: CCNA_00058 - hypothetical protein, at 59,754 to 60,386
_00058
CCNA_00059: CCNA_00059 - oxygen-insensitive NADH nitroreductase, at 60,534 to 61,121
_00059
Position (kb)
59
60 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 58.116 kb on + strand at 58.116 kb on + strand at 58.116 kb on + strand at 58.116 kb on + strand at 58.119 kb on - strand at 58.124 kb on - strand at 58.124 kb on - strand at 58.140 kb on - strand at 58.144 kb on - strand at 58.155 kb on - strand at 58.192 kb on + strand at 58.197 kb on + strand at 58.200 kb on - strand at 58.225 kb on - strand at 58.228 kb on - strand at 58.615 kb on + strand at 58.638 kb on + strand at 58.643 kb on + strand at 58.651 kb on - strand at 58.651 kb on - strand at 58.658 kb on - strand at 58.665 kb on - strand at 58.666 kb on - strand at 58.743 kb on + strand, within CCNA_00056 at 58.750 kb on + strand, within CCNA_00056 at 58.759 kb on - strand, within CCNA_00056 at 58.819 kb on - strand, within CCNA_00056 at 58.819 kb on - strand, within CCNA_00056 at 58.846 kb on + strand, within CCNA_00056 at 58.849 kb on - strand, within CCNA_00056 at 58.857 kb on + strand, within CCNA_00056 at 58.857 kb on + strand, within CCNA_00056 at 58.857 kb on + strand, within CCNA_00056 at 58.943 kb on + strand, within CCNA_00056 at 58.988 kb on - strand, within CCNA_00056 at 58.991 kb on + strand, within CCNA_00056 at 59.017 kb on + strand, within CCNA_00056 at 59.017 kb on + strand, within CCNA_00056 at 59.017 kb on + strand, within CCNA_00056 at 59.017 kb on + strand, within CCNA_00056 at 59.017 kb on + strand, within CCNA_00056 at 59.025 kb on - strand, within CCNA_00056 at 59.025 kb on - strand, within CCNA_00056 at 59.027 kb on + strand, within CCNA_00056 at 59.035 kb on - strand, within CCNA_00056 at 59.035 kb on - strand, within CCNA_00056 at 59.045 kb on + strand, within CCNA_00056 at 59.046 kb on - strand, within CCNA_00056 at 59.100 kb on + strand at 59.129 kb on + strand at 59.148 kb on - strand at 59.154 kb on - strand at 59.172 kb on + strand at 59.505 kb on + strand, within CCNA_00057 at 59.788 kb on + strand at 59.800 kb on + strand at 59.808 kb on - strand at 59.808 kb on - strand at 59.812 kb on + strand at 59.812 kb on + strand at 59.812 kb on + strand at 59.856 kb on - strand, within CCNA_00058 at 59.931 kb on + strand, within CCNA_00058 at 59.931 kb on + strand, within CCNA_00058 at 59.939 kb on - strand, within CCNA_00058 at 59.941 kb on + strand, within CCNA_00058 at 59.941 kb on + strand, within CCNA_00058 at 59.949 kb on - strand, within CCNA_00058 at 59.964 kb on + strand, within CCNA_00058 at 59.983 kb on + strand, within CCNA_00058 at 59.988 kb on + strand, within CCNA_00058 at 60.024 kb on - strand, within CCNA_00058 at 60.041 kb on - strand, within CCNA_00058 at 60.051 kb on - strand, within CCNA_00058 at 60.077 kb on + strand, within CCNA_00058 at 60.077 kb on + strand, within CCNA_00058 at 60.082 kb on + strand, within CCNA_00058 at 60.085 kb on - strand, within CCNA_00058 at 60.090 kb on - strand, within CCNA_00058 at 60.090 kb on - strand, within CCNA_00058 at 60.095 kb on - strand, within CCNA_00058 at 60.115 kb on + strand, within CCNA_00058 at 60.122 kb on - strand, within CCNA_00058 at 60.122 kb on - strand, within CCNA_00058 at 60.151 kb on + strand, within CCNA_00058 at 60.152 kb on - strand, within CCNA_00058 at 60.159 kb on - strand, within CCNA_00058 at 60.159 kb on - strand, within CCNA_00058 at 60.165 kb on + strand, within CCNA_00058 at 60.196 kb on - strand, within CCNA_00058 at 60.202 kb on + strand, within CCNA_00058 at 60.312 kb on - strand, within CCNA_00058 at 60.319 kb on + strand, within CCNA_00058 at 60.319 kb on + strand, within CCNA_00058 at 60.327 kb on - strand at 60.348 kb on - strand at 60.357 kb on - strand at 60.442 kb on + strand at 60.449 kb on + strand at 60.457 kb on - strand at 60.471 kb on + strand at 60.479 kb on - strand at 60.561 kb on + strand at 60.651 kb on + strand, within CCNA_00059 at 60.683 kb on - strand, within CCNA_00059
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 58,116 + +1.0 58,116 + +0.1 58,116 + +0.5 58,116 + +1.0 58,119 - -0.5 58,124 - +0.3 58,124 - +0.3 58,140 - -1.0 58,144 - +0.0 58,155 - +0.7 58,192 + -0.3 58,197 + +0.6 58,200 - +1.6 58,225 - -0.2 58,228 - +0.3 58,615 + +0.2 58,638 + +0.7 58,643 + +0.1 58,651 - -0.1 58,651 - -0.2 58,658 - -1.1 58,665 - -0.5 58,666 - +0.0 58,743 + CCNA_00056 0.20 +0.1 58,750 + CCNA_00056 0.21 +0.8 58,759 - CCNA_00056 0.23 +2.9 58,819 - CCNA_00056 0.36 +0.9 58,819 - CCNA_00056 0.36 +0.4 58,846 + CCNA_00056 0.42 -0.6 58,849 - CCNA_00056 0.43 -0.5 58,857 + CCNA_00056 0.45 +2.1 58,857 + CCNA_00056 0.45 +1.3 58,857 + CCNA_00056 0.45 +0.7 58,943 + CCNA_00056 0.64 +1.2 58,988 - CCNA_00056 0.74 +1.7 58,991 + CCNA_00056 0.74 +0.8 59,017 + CCNA_00056 0.80 +0.4 59,017 + CCNA_00056 0.80 -1.0 59,017 + CCNA_00056 0.80 +0.3 59,017 + CCNA_00056 0.80 -0.2 59,017 + CCNA_00056 0.80 -0.3 59,025 - CCNA_00056 0.82 -1.2 59,025 - CCNA_00056 0.82 +0.4 59,027 + CCNA_00056 0.82 +0.3 59,035 - CCNA_00056 0.84 +0.7 59,035 - CCNA_00056 0.84 +1.0 59,045 + CCNA_00056 0.86 +0.0 59,046 - CCNA_00056 0.87 -0.1 59,100 + +0.9 59,129 + +1.1 59,148 - +0.7 59,154 - +0.8 59,172 + -0.7 59,505 + CCNA_00057 0.61 -0.8 59,788 + +0.0 59,800 + -0.3 59,808 - +0.5 59,808 - +0.5 59,812 + -0.5 59,812 + -0.7 59,812 + +0.8 59,856 - CCNA_00058 0.16 -1.2 59,931 + CCNA_00058 0.28 +0.7 59,931 + CCNA_00058 0.28 -1.0 59,939 - CCNA_00058 0.29 +0.1 59,941 + CCNA_00058 0.30 -0.8 59,941 + CCNA_00058 0.30 -0.9 59,949 - CCNA_00058 0.31 -0.2 59,964 + CCNA_00058 0.33 +0.7 59,983 + CCNA_00058 0.36 +0.6 59,988 + CCNA_00058 0.37 +1.2 60,024 - CCNA_00058 0.43 +0.4 60,041 - CCNA_00058 0.45 -0.3 60,051 - CCNA_00058 0.47 +0.2 60,077 + CCNA_00058 0.51 +0.8 60,077 + CCNA_00058 0.51 +0.6 60,082 + CCNA_00058 0.52 -0.1 60,085 - CCNA_00058 0.52 -0.7 60,090 - CCNA_00058 0.53 +0.6 60,090 - CCNA_00058 0.53 +1.0 60,095 - CCNA_00058 0.54 +0.3 60,115 + CCNA_00058 0.57 +2.8 60,122 - CCNA_00058 0.58 +0.5 60,122 - CCNA_00058 0.58 -0.1 60,151 + CCNA_00058 0.63 +0.5 60,152 - CCNA_00058 0.63 +0.2 60,159 - CCNA_00058 0.64 +0.9 60,159 - CCNA_00058 0.64 +0.2 60,165 + CCNA_00058 0.65 +0.8 60,196 - CCNA_00058 0.70 -0.6 60,202 + CCNA_00058 0.71 -0.4 60,312 - CCNA_00058 0.88 +1.2 60,319 + CCNA_00058 0.89 +0.1 60,319 + CCNA_00058 0.89 -0.5 60,327 - +0.5 60,348 - +1.3 60,357 - -1.8 60,442 + +0.0 60,449 + -0.0 60,457 - -0.0 60,471 + +0.0 60,479 - -0.3 60,561 + -0.5 60,651 + CCNA_00059 0.20 -0.0 60,683 - CCNA_00059 0.25 +2.7
Or see this region's nucleotide sequence