Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00039

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00037 and CCNA_00038 are separated by 59 nucleotidesCCNA_00038 and CCNA_00039 overlap by 1 nucleotidesCCNA_00039 and CCNA_00040 are separated by 38 nucleotidesCCNA_00040 and CCNA_00041 are separated by 73 nucleotides CCNA_00037: CCNA_00037 - esterase lipase family protein, at 39,980 to 40,768 _00037 CCNA_00038: CCNA_00038 - hypothetical protein, at 40,828 to 41,403 _00038 CCNA_00039: CCNA_00039 - hypothetical protein, at 41,403 to 41,921 _00039 CCNA_00040: CCNA_00040 - YcxB-like membrane protein, at 41,960 to 42,511 _00040 CCNA_00041: CCNA_00041 - protein translation initiation factor 2 IF-2, at 42,585 to 45,614 _00041 Position (kb) 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 40.422 kb on + strand, within CCNA_00037at 40.430 kb on - strand, within CCNA_00037at 40.430 kb on - strand, within CCNA_00037at 40.431 kb on + strand, within CCNA_00037at 40.465 kb on + strand, within CCNA_00037at 40.465 kb on + strand, within CCNA_00037at 40.542 kb on - strand, within CCNA_00037at 40.557 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.643 kb on - strand, within CCNA_00037at 40.683 kb on + strand, within CCNA_00037at 40.745 kb on + strandat 40.795 kb on + strandat 40.796 kb on + strandat 40.802 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.838 kb on - strandat 40.839 kb on + strandat 40.839 kb on + strandat 40.849 kb on - strandat 40.849 kb on - strandat 40.859 kb on - strandat 40.891 kb on - strand, within CCNA_00038at 40.947 kb on - strand, within CCNA_00038at 40.956 kb on - strand, within CCNA_00038at 41.068 kb on + strand, within CCNA_00038at 41.069 kb on + strand, within CCNA_00038at 41.070 kb on - strand, within CCNA_00038at 41.077 kb on - strand, within CCNA_00038at 41.089 kb on + strand, within CCNA_00038at 41.097 kb on - strand, within CCNA_00038at 41.098 kb on - strand, within CCNA_00038at 41.119 kb on - strand, within CCNA_00038at 41.182 kb on - strand, within CCNA_00038at 41.182 kb on - strand, within CCNA_00038at 41.185 kb on + strand, within CCNA_00038at 41.214 kb on - strand, within CCNA_00038at 41.246 kb on + strand, within CCNA_00038at 41.254 kb on - strand, within CCNA_00038at 41.265 kb on + strand, within CCNA_00038at 41.268 kb on - strand, within CCNA_00038at 41.275 kb on + strand, within CCNA_00038at 41.282 kb on + strand, within CCNA_00038at 41.317 kb on + strand, within CCNA_00038at 41.317 kb on - strand, within CCNA_00038at 41.348 kb on - strandat 41.388 kb on - strandat 41.491 kb on - strand, within CCNA_00039at 41.502 kb on - strand, within CCNA_00039at 41.514 kb on - strand, within CCNA_00039at 41.574 kb on + strand, within CCNA_00039at 41.592 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.649 kb on + strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.702 kb on - strand, within CCNA_00039at 41.702 kb on - strand, within CCNA_00039at 41.702 kb on - strand, within CCNA_00039at 41.702 kb on - strand, within CCNA_00039at 41.702 kb on - strand, within CCNA_00039at 41.702 kb on - strand, within CCNA_00039at 41.702 kb on - strand, within CCNA_00039at 41.835 kb on + strand, within CCNA_00039at 41.871 kb on - strandat 41.899 kb on - strandat 41.955 kb on + strandat 41.958 kb on - strandat 41.966 kb on - strandat 41.966 kb on - strandat 41.968 kb on + strandat 41.971 kb on - strandat 41.972 kb on - strandat 41.976 kb on - strandat 41.991 kb on - strandat 42.006 kb on + strandat 42.072 kb on - strand, within CCNA_00040at 42.082 kb on + strand, within CCNA_00040at 42.084 kb on + strand, within CCNA_00040at 42.097 kb on - strand, within CCNA_00040at 42.112 kb on + strand, within CCNA_00040at 42.118 kb on + strand, within CCNA_00040at 42.118 kb on + strand, within CCNA_00040at 42.128 kb on + strand, within CCNA_00040at 42.128 kb on + strand, within CCNA_00040at 42.138 kb on + strand, within CCNA_00040at 42.157 kb on + strand, within CCNA_00040at 42.157 kb on + strand, within CCNA_00040at 42.158 kb on - strand, within CCNA_00040at 42.165 kb on - strand, within CCNA_00040at 42.178 kb on + strand, within CCNA_00040at 42.182 kb on - strand, within CCNA_00040at 42.191 kb on - strand, within CCNA_00040at 42.258 kb on - strand, within CCNA_00040at 42.266 kb on - strand, within CCNA_00040at 42.292 kb on + strand, within CCNA_00040at 42.300 kb on - strand, within CCNA_00040at 42.300 kb on - strand, within CCNA_00040at 42.400 kb on - strand, within CCNA_00040at 42.400 kb on - strand, within CCNA_00040at 42.543 kb on - strandat 42.557 kb on + strandat 42.565 kb on + strandat 42.566 kb on - strandat 42.566 kb on - strandat 42.598 kb on + strandat 42.606 kb on - strandat 42.606 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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40,422 + CCNA_00037 0.56 -0.5
40,430 - CCNA_00037 0.57 +0.1
40,430 - CCNA_00037 0.57 +0.3
40,431 + CCNA_00037 0.57 -0.6
40,465 + CCNA_00037 0.61 -0.0
40,465 + CCNA_00037 0.61 -0.2
40,542 - CCNA_00037 0.71 +0.6
40,557 + CCNA_00037 0.73 +0.5
40,625 + CCNA_00037 0.82 +0.8
40,625 + CCNA_00037 0.82 -1.8
40,633 - CCNA_00037 0.83 -0.1
40,633 - CCNA_00037 0.83 +1.0
40,633 - CCNA_00037 0.83 +0.3
40,633 - CCNA_00037 0.83 -2.6
40,643 - CCNA_00037 0.84 +0.9
40,683 + CCNA_00037 0.89 -1.2
40,745 + -0.2
40,795 + -2.1
40,796 + -0.0
40,802 - +0.1
40,803 - +0.5
40,803 - +0.2
40,803 - +1.5
40,803 - +1.1
40,803 - +0.7
40,803 - +0.2
40,803 - +0.8
40,838 - +0.5
40,839 + +0.6
40,839 + +0.3
40,849 - -0.2
40,849 - -0.9
40,859 - +0.0
40,891 - CCNA_00038 0.11 +1.7
40,947 - CCNA_00038 0.21 +0.4
40,956 - CCNA_00038 0.22 -1.2
41,068 + CCNA_00038 0.42 -1.0
41,069 + CCNA_00038 0.42 -0.7
41,070 - CCNA_00038 0.42 +0.7
41,077 - CCNA_00038 0.43 -0.5
41,089 + CCNA_00038 0.45 -0.0
41,097 - CCNA_00038 0.47 +0.8
41,098 - CCNA_00038 0.47 +0.5
41,119 - CCNA_00038 0.51 -0.4
41,182 - CCNA_00038 0.61 -1.0
41,182 - CCNA_00038 0.61 +0.7
41,185 + CCNA_00038 0.62 -1.2
41,214 - CCNA_00038 0.67 +0.8
41,246 + CCNA_00038 0.73 +0.7
41,254 - CCNA_00038 0.74 -1.3
41,265 + CCNA_00038 0.76 +1.4
41,268 - CCNA_00038 0.76 +1.3
41,275 + CCNA_00038 0.78 -0.2
41,282 + CCNA_00038 0.79 +0.1
41,317 + CCNA_00038 0.85 -1.0
41,317 - CCNA_00038 0.85 -1.4
41,348 - +0.1
41,388 - -0.8
41,491 - CCNA_00039 0.17 +0.6
41,502 - CCNA_00039 0.19 +0.5
41,514 - CCNA_00039 0.21 +0.2
41,574 + CCNA_00039 0.33 -0.9
41,592 + CCNA_00039 0.36 -0.5
41,625 + CCNA_00039 0.43 -1.3
41,625 + CCNA_00039 0.43 +0.3
41,625 + CCNA_00039 0.43 -0.4
41,625 + CCNA_00039 0.43 -0.1
41,625 + CCNA_00039 0.43 -0.7
41,633 - CCNA_00039 0.44 +0.5
41,633 - CCNA_00039 0.44 +0.1
41,633 - CCNA_00039 0.44 +0.8
41,633 - CCNA_00039 0.44 -0.7
41,633 - CCNA_00039 0.44 -1.0
41,633 - CCNA_00039 0.44 -0.2
41,649 + CCNA_00039 0.47 -0.3
41,694 + CCNA_00039 0.56 -0.6
41,694 + CCNA_00039 0.56 -1.3
41,694 + CCNA_00039 0.56 -1.1
41,702 - CCNA_00039 0.58 +1.3
41,702 - CCNA_00039 0.58 +0.2
41,702 - CCNA_00039 0.58 -0.2
41,702 - CCNA_00039 0.58 -0.3
41,702 - CCNA_00039 0.58 +0.7
41,702 - CCNA_00039 0.58 -0.0
41,702 - CCNA_00039 0.58 +0.1
41,835 + CCNA_00039 0.83 +0.3
41,871 - -0.2
41,899 - +0.0
41,955 + -0.7
41,958 - +0.9
41,966 - +0.5
41,966 - -0.2
41,968 + +0.3
41,971 - +0.2
41,972 - -0.3
41,976 - +0.8
41,991 - -1.2
42,006 + +1.4
42,072 - CCNA_00040 0.20 -0.7
42,082 + CCNA_00040 0.22 -1.0
42,084 + CCNA_00040 0.22 +0.1
42,097 - CCNA_00040 0.25 +0.3
42,112 + CCNA_00040 0.28 -1.0
42,118 + CCNA_00040 0.29 -0.4
42,118 + CCNA_00040 0.29 -0.9
42,128 + CCNA_00040 0.30 +1.0
42,128 + CCNA_00040 0.30 +1.0
42,138 + CCNA_00040 0.32 -0.0
42,157 + CCNA_00040 0.36 -0.0
42,157 + CCNA_00040 0.36 +2.0
42,158 - CCNA_00040 0.36 +0.8
42,165 - CCNA_00040 0.37 -0.4
42,178 + CCNA_00040 0.39 +1.0
42,182 - CCNA_00040 0.40 +0.0
42,191 - CCNA_00040 0.42 -0.2
42,258 - CCNA_00040 0.54 -0.1
42,266 - CCNA_00040 0.55 +0.2
42,292 + CCNA_00040 0.60 -0.2
42,300 - CCNA_00040 0.62 +0.2
42,300 - CCNA_00040 0.62 +0.4
42,400 - CCNA_00040 0.80 +1.3
42,400 - CCNA_00040 0.80 +0.4
42,543 - +0.8
42,557 + -1.9
42,565 + -1.8
42,566 - +0.1
42,566 - -0.3
42,598 + -0.9
42,606 - -0.1
42,606 - +0.3

Or see this region's nucleotide sequence