Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21300

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21290 and CA264_21295 are separated by 23 nucleotidesCA264_21295 and CA264_21300 are separated by 13 nucleotidesCA264_21300 and CA264_21305 are separated by 130 nucleotidesCA264_21305 and CA264_21310 are separated by 190 nucleotidesCA264_21310 and CA264_21315 are separated by 82 nucleotides CA264_21290: CA264_21290 - SCO family protein, at 123,777 to 124,433 _21290 CA264_21295: CA264_21295 - hypothetical protein, at 124,457 to 124,855 _21295 CA264_21300: CA264_21300 - hypothetical protein, at 124,869 to 125,432 _21300 CA264_21305: CA264_21305 - hypothetical protein, at 125,563 to 125,895 _21305 CA264_21310: CA264_21310 - hypothetical protein, at 126,086 to 126,292 _21310 CA264_21315: CA264_21315 - four-helix bundle copper-binding protein, at 126,375 to 126,734 _21315 Position (kb) 124 125 126Strain fitness (log2 ratio) -2 -1 0 1at 123.923 kb on + strand, within CA264_21290at 123.923 kb on + strand, within CA264_21290at 124.069 kb on - strand, within CA264_21290at 124.077 kb on + strand, within CA264_21290at 124.077 kb on + strand, within CA264_21290at 124.077 kb on + strand, within CA264_21290at 124.078 kb on - strand, within CA264_21290at 124.144 kb on + strand, within CA264_21290at 124.313 kb on - strand, within CA264_21290at 124.431 kb on + strandat 124.449 kb on + strandat 124.450 kb on - strandat 124.548 kb on - strand, within CA264_21295at 124.710 kb on - strand, within CA264_21295at 124.710 kb on - strand, within CA264_21295at 124.772 kb on + strand, within CA264_21295at 124.825 kb on - strandat 124.849 kb on + strandat 124.849 kb on + strandat 124.850 kb on - strandat 124.850 kb on - strandat 124.864 kb on - strandat 124.892 kb on - strandat 124.960 kb on - strand, within CA264_21300at 125.135 kb on + strand, within CA264_21300at 125.192 kb on - strand, within CA264_21300at 125.386 kb on - strandat 125.493 kb on + strandat 125.493 kb on + strandat 125.497 kb on - strandat 125.499 kb on - strandat 125.501 kb on + strandat 125.502 kb on - strandat 125.502 kb on - strandat 125.502 kb on - strandat 125.656 kb on - strand, within CA264_21305at 125.716 kb on - strand, within CA264_21305at 125.754 kb on + strand, within CA264_21305at 125.794 kb on - strand, within CA264_21305at 125.884 kb on - strandat 125.894 kb on - strandat 126.021 kb on - strandat 126.044 kb on - strandat 126.218 kb on + strand, within CA264_21310at 126.219 kb on - strand, within CA264_21310at 126.339 kb on - strandat 126.374 kb on + strandat 126.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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123,923 + CA264_21290 0.22 -0.9
123,923 + CA264_21290 0.22 -1.8
124,069 - CA264_21290 0.44 -1.6
124,077 + CA264_21290 0.46 -1.2
124,077 + CA264_21290 0.46 -0.8
124,077 + CA264_21290 0.46 -2.7
124,078 - CA264_21290 0.46 -0.4
124,144 + CA264_21290 0.56 -1.9
124,313 - CA264_21290 0.82 -1.3
124,431 + -1.8
124,449 + -1.3
124,450 - -0.7
124,548 - CA264_21295 0.23 -0.6
124,710 - CA264_21295 0.63 +0.4
124,710 - CA264_21295 0.63 -0.6
124,772 + CA264_21295 0.79 -2.4
124,825 - -0.4
124,849 + -1.8
124,849 + -2.0
124,850 - -0.9
124,850 - +0.1
124,864 - +0.0
124,892 - -0.6
124,960 - CA264_21300 0.16 -1.0
125,135 + CA264_21300 0.47 -1.9
125,192 - CA264_21300 0.57 -0.8
125,386 - -0.1
125,493 + -2.1
125,493 + -0.6
125,497 - -0.2
125,499 - -0.3
125,501 + -0.8
125,502 - -1.3
125,502 - -0.0
125,502 - +0.8
125,656 - CA264_21305 0.28 +0.1
125,716 - CA264_21305 0.46 -0.7
125,754 + CA264_21305 0.57 -0.8
125,794 - CA264_21305 0.69 -0.0
125,884 - -0.3
125,894 - -1.0
126,021 - -1.5
126,044 - -0.6
126,218 + CA264_21310 0.64 -2.1
126,219 - CA264_21310 0.64 -2.1
126,339 - -1.2
126,374 + -1.0
126,375 - -1.0

Or see this region's nucleotide sequence