Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21210

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21200 and CA264_21205 are separated by 17 nucleotidesCA264_21205 and CA264_21210 are separated by 79 nucleotidesCA264_21210 and CA264_21215 overlap by 4 nucleotidesCA264_21215 and CA264_21220 are separated by 165 nucleotides CA264_21200: CA264_21200 - hypothetical protein, at 106,010 to 106,597 _21200 CA264_21205: CA264_21205 - hypothetical protein, at 106,615 to 106,977 _21205 CA264_21210: CA264_21210 - SOS mutagenesis and repair protein UmuC, at 107,057 to 108,325 _21210 CA264_21215: CA264_21215 - DNA polymerase V, at 108,322 to 108,777 _21215 CA264_21220: CA264_21220 - hypothetical protein, at 108,943 to 109,728 _21220 Position (kb) 107 108 109Strain fitness (log2 ratio) -2 -1 0 1at 106.097 kb on + strand, within CA264_21200at 106.097 kb on + strand, within CA264_21200at 106.098 kb on - strand, within CA264_21200at 106.129 kb on + strand, within CA264_21200at 106.136 kb on + strand, within CA264_21200at 106.157 kb on + strand, within CA264_21200at 106.175 kb on + strand, within CA264_21200at 106.176 kb on - strand, within CA264_21200at 106.316 kb on + strand, within CA264_21200at 106.316 kb on + strand, within CA264_21200at 106.317 kb on - strand, within CA264_21200at 106.364 kb on + strand, within CA264_21200at 106.365 kb on - strand, within CA264_21200at 106.365 kb on - strand, within CA264_21200at 106.381 kb on - strand, within CA264_21200at 106.483 kb on + strand, within CA264_21200at 106.484 kb on - strand, within CA264_21200at 106.484 kb on - strand, within CA264_21200at 106.484 kb on - strand, within CA264_21200at 106.502 kb on + strand, within CA264_21200at 106.503 kb on - strand, within CA264_21200at 106.503 kb on - strand, within CA264_21200at 106.504 kb on + strand, within CA264_21200at 106.515 kb on - strand, within CA264_21200at 106.515 kb on - strand, within CA264_21200at 106.604 kb on + strandat 106.605 kb on - strandat 106.607 kb on - strandat 106.607 kb on - strandat 106.607 kb on - strandat 106.607 kb on - strandat 106.609 kb on + strandat 106.610 kb on - strandat 106.610 kb on - strandat 106.611 kb on + strandat 106.611 kb on + strandat 106.611 kb on + strandat 106.611 kb on + strandat 106.612 kb on - strandat 106.612 kb on - strandat 106.613 kb on + strandat 106.613 kb on + strandat 106.614 kb on - strandat 106.614 kb on - strandat 106.628 kb on - strandat 106.630 kb on + strandat 106.631 kb on - strandat 106.647 kb on - strandat 106.671 kb on + strand, within CA264_21205at 106.671 kb on + strand, within CA264_21205at 106.672 kb on - strand, within CA264_21205at 106.672 kb on - strand, within CA264_21205at 106.672 kb on - strand, within CA264_21205at 106.672 kb on - strand, within CA264_21205at 106.674 kb on + strand, within CA264_21205at 106.674 kb on + strand, within CA264_21205at 106.675 kb on - strand, within CA264_21205at 106.676 kb on + strand, within CA264_21205at 106.808 kb on + strand, within CA264_21205at 106.808 kb on + strand, within CA264_21205at 106.829 kb on + strand, within CA264_21205at 106.892 kb on + strand, within CA264_21205at 106.978 kb on - strandat 106.979 kb on + strandat 107.082 kb on - strandat 107.092 kb on + strandat 107.093 kb on - strandat 107.094 kb on + strandat 107.095 kb on - strandat 107.095 kb on - strandat 107.131 kb on + strandat 107.153 kb on + strandat 107.160 kb on - strandat 107.185 kb on + strand, within CA264_21210at 107.185 kb on + strand, within CA264_21210at 107.221 kb on + strand, within CA264_21210at 107.246 kb on - strand, within CA264_21210at 107.246 kb on - strand, within CA264_21210at 107.286 kb on + strand, within CA264_21210at 107.323 kb on - strand, within CA264_21210at 107.323 kb on - strand, within CA264_21210at 107.349 kb on + strand, within CA264_21210at 107.409 kb on + strand, within CA264_21210at 107.409 kb on + strand, within CA264_21210at 107.409 kb on + strand, within CA264_21210at 107.410 kb on - strand, within CA264_21210at 107.412 kb on + strand, within CA264_21210at 107.412 kb on + strand, within CA264_21210at 107.440 kb on + strand, within CA264_21210at 107.441 kb on - strand, within CA264_21210at 107.444 kb on - strand, within CA264_21210at 107.444 kb on - strand, within CA264_21210at 107.612 kb on + strand, within CA264_21210at 107.670 kb on - strand, within CA264_21210at 107.771 kb on + strand, within CA264_21210at 107.771 kb on + strand, within CA264_21210at 107.772 kb on - strand, within CA264_21210at 107.910 kb on - strand, within CA264_21210at 107.974 kb on + strand, within CA264_21210at 107.975 kb on - strand, within CA264_21210at 107.978 kb on + strand, within CA264_21210at 107.978 kb on + strand, within CA264_21210at 107.997 kb on - strand, within CA264_21210at 108.086 kb on + strand, within CA264_21210at 108.086 kb on + strand, within CA264_21210at 108.086 kb on + strand, within CA264_21210at 108.087 kb on - strand, within CA264_21210at 108.087 kb on - strand, within CA264_21210at 108.089 kb on - strand, within CA264_21210at 108.089 kb on - strand, within CA264_21210at 108.106 kb on + strand, within CA264_21210at 108.106 kb on + strand, within CA264_21210at 108.106 kb on + strand, within CA264_21210at 108.107 kb on - strand, within CA264_21210at 108.107 kb on - strand, within CA264_21210at 108.107 kb on - strand, within CA264_21210at 108.111 kb on + strand, within CA264_21210at 108.112 kb on - strand, within CA264_21210at 108.116 kb on + strand, within CA264_21210at 108.116 kb on + strand, within CA264_21210at 108.122 kb on - strand, within CA264_21210at 108.122 kb on - strand, within CA264_21210at 108.124 kb on - strand, within CA264_21210at 108.124 kb on - strand, within CA264_21210at 108.131 kb on + strand, within CA264_21210at 108.131 kb on + strand, within CA264_21210at 108.133 kb on + strand, within CA264_21210at 108.134 kb on - strand, within CA264_21210at 108.200 kb on - strandat 108.233 kb on + strandat 108.252 kb on - strandat 108.286 kb on - strandat 108.293 kb on - strandat 108.302 kb on + strandat 108.303 kb on - strandat 108.303 kb on - strandat 108.319 kb on + strandat 108.343 kb on + strandat 108.412 kb on - strand, within CA264_21215at 108.467 kb on + strand, within CA264_21215at 108.468 kb on - strand, within CA264_21215at 108.557 kb on + strand, within CA264_21215at 108.558 kb on - strand, within CA264_21215at 108.558 kb on - strand, within CA264_21215at 108.567 kb on + strand, within CA264_21215at 108.567 kb on + strand, within CA264_21215at 108.568 kb on - strand, within CA264_21215at 108.568 kb on - strand, within CA264_21215at 108.568 kb on - strand, within CA264_21215at 108.568 kb on - strand, within CA264_21215at 108.568 kb on - strand, within CA264_21215at 108.580 kb on + strand, within CA264_21215at 108.590 kb on + strand, within CA264_21215at 108.590 kb on + strand, within CA264_21215at 108.591 kb on - strand, within CA264_21215at 108.628 kb on + strand, within CA264_21215at 108.628 kb on + strand, within CA264_21215at 108.628 kb on + strand, within CA264_21215at 108.629 kb on - strand, within CA264_21215at 108.633 kb on + strand, within CA264_21215at 108.634 kb on - strand, within CA264_21215at 108.640 kb on - strand, within CA264_21215at 108.760 kb on + strandat 108.760 kb on + strandat 108.760 kb on + strandat 108.761 kb on - strandat 108.842 kb on - strandat 108.886 kb on + strandat 108.895 kb on - strandat 108.908 kb on - strandat 108.908 kb on - strandat 108.908 kb on - strandat 108.908 kb on - strandat 108.957 kb on + strandat 108.958 kb on - strandat 108.964 kb on + strandat 108.964 kb on + strandat 108.964 kb on + strandat 108.984 kb on + strandat 108.999 kb on - strandat 109.053 kb on + strand, within CA264_21220at 109.055 kb on + strand, within CA264_21220at 109.055 kb on + strand, within CA264_21220at 109.055 kb on + strand, within CA264_21220at 109.057 kb on + strand, within CA264_21220at 109.057 kb on + strand, within CA264_21220at 109.058 kb on - strand, within CA264_21220at 109.058 kb on - strand, within CA264_21220at 109.058 kb on - strand, within CA264_21220at 109.058 kb on - strand, within CA264_21220at 109.081 kb on + strand, within CA264_21220at 109.093 kb on - strand, within CA264_21220at 109.140 kb on + strand, within CA264_21220at 109.145 kb on + strand, within CA264_21220at 109.168 kb on - strand, within CA264_21220at 109.168 kb on - strand, within CA264_21220at 109.176 kb on - strand, within CA264_21220at 109.209 kb on + strand, within CA264_21220at 109.209 kb on + strand, within CA264_21220at 109.225 kb on + strand, within CA264_21220at 109.225 kb on + strand, within CA264_21220at 109.225 kb on + strand, within CA264_21220at 109.225 kb on + strand, within CA264_21220at 109.225 kb on + strand, within CA264_21220at 109.226 kb on - strand, within CA264_21220at 109.256 kb on - strand, within CA264_21220at 109.279 kb on + strand, within CA264_21220at 109.280 kb on - strand, within CA264_21220

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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106,097 + CA264_21200 0.15 +0.0
106,097 + CA264_21200 0.15 +0.6
106,098 - CA264_21200 0.15 -1.1
106,129 + CA264_21200 0.20 -0.1
106,136 + CA264_21200 0.21 -0.6
106,157 + CA264_21200 0.25 -1.1
106,175 + CA264_21200 0.28 +1.0
106,176 - CA264_21200 0.28 +0.6
106,316 + CA264_21200 0.52 -0.8
106,316 + CA264_21200 0.52 +0.3
106,317 - CA264_21200 0.52 -0.1
106,364 + CA264_21200 0.60 -0.5
106,365 - CA264_21200 0.60 -1.1
106,365 - CA264_21200 0.60 +0.1
106,381 - CA264_21200 0.63 +0.1
106,483 + CA264_21200 0.80 +0.6
106,484 - CA264_21200 0.81 +1.2
106,484 - CA264_21200 0.81 -0.8
106,484 - CA264_21200 0.81 +1.2
106,502 + CA264_21200 0.84 -0.4
106,503 - CA264_21200 0.84 -1.6
106,503 - CA264_21200 0.84 -0.2
106,504 + CA264_21200 0.84 +0.2
106,515 - CA264_21200 0.86 -0.3
106,515 - CA264_21200 0.86 -1.1
106,604 + +0.5
106,605 - -0.1
106,607 - +0.6
106,607 - +0.0
106,607 - -0.5
106,607 - +0.2
106,609 + +1.4
106,610 - -1.3
106,610 - -0.2
106,611 + +0.5
106,611 + -1.0
106,611 + -0.1
106,611 + -0.1
106,612 - -0.2
106,612 - -0.5
106,613 + +0.0
106,613 + -0.2
106,614 - +0.0
106,614 - +0.5
106,628 - -0.5
106,630 + -0.6
106,631 - +0.8
106,647 - +0.2
106,671 + CA264_21205 0.15 +1.5
106,671 + CA264_21205 0.15 -0.2
106,672 - CA264_21205 0.16 -0.3
106,672 - CA264_21205 0.16 -0.3
106,672 - CA264_21205 0.16 +0.2
106,672 - CA264_21205 0.16 -0.1
106,674 + CA264_21205 0.16 +0.3
106,674 + CA264_21205 0.16 -1.4
106,675 - CA264_21205 0.17 -0.3
106,676 + CA264_21205 0.17 -0.6
106,808 + CA264_21205 0.53 +0.6
106,808 + CA264_21205 0.53 -0.3
106,829 + CA264_21205 0.59 -0.2
106,892 + CA264_21205 0.76 +1.4
106,978 - -0.7
106,979 + -0.1
107,082 - +0.2
107,092 + -2.6
107,093 - -0.6
107,094 + -0.0
107,095 - -0.0
107,095 - -0.6
107,131 + -1.1
107,153 + +0.1
107,160 - +0.6
107,185 + CA264_21210 0.10 +0.2
107,185 + CA264_21210 0.10 +0.0
107,221 + CA264_21210 0.13 -0.4
107,246 - CA264_21210 0.15 -0.1
107,246 - CA264_21210 0.15 +0.6
107,286 + CA264_21210 0.18 -0.3
107,323 - CA264_21210 0.21 -0.0
107,323 - CA264_21210 0.21 -0.8
107,349 + CA264_21210 0.23 +1.0
107,409 + CA264_21210 0.28 -0.4
107,409 + CA264_21210 0.28 -0.7
107,409 + CA264_21210 0.28 +0.3
107,410 - CA264_21210 0.28 +0.2
107,412 + CA264_21210 0.28 +0.4
107,412 + CA264_21210 0.28 +0.0
107,440 + CA264_21210 0.30 +0.3
107,441 - CA264_21210 0.30 +0.1
107,444 - CA264_21210 0.30 -0.7
107,444 - CA264_21210 0.30 -0.0
107,612 + CA264_21210 0.44 +0.4
107,670 - CA264_21210 0.48 +0.1
107,771 + CA264_21210 0.56 -0.4
107,771 + CA264_21210 0.56 +0.7
107,772 - CA264_21210 0.56 -0.1
107,910 - CA264_21210 0.67 +0.6
107,974 + CA264_21210 0.72 +1.4
107,975 - CA264_21210 0.72 +0.1
107,978 + CA264_21210 0.73 -0.3
107,978 + CA264_21210 0.73 -2.1
107,997 - CA264_21210 0.74 -1.3
108,086 + CA264_21210 0.81 +0.4
108,086 + CA264_21210 0.81 +1.1
108,086 + CA264_21210 0.81 +0.2
108,087 - CA264_21210 0.81 -0.3
108,087 - CA264_21210 0.81 -0.5
108,089 - CA264_21210 0.81 -1.5
108,089 - CA264_21210 0.81 -0.4
108,106 + CA264_21210 0.83 +0.6
108,106 + CA264_21210 0.83 -0.1
108,106 + CA264_21210 0.83 +0.3
108,107 - CA264_21210 0.83 +0.3
108,107 - CA264_21210 0.83 -0.9
108,107 - CA264_21210 0.83 -0.2
108,111 + CA264_21210 0.83 -1.5
108,112 - CA264_21210 0.83 +0.1
108,116 + CA264_21210 0.83 +1.2
108,116 + CA264_21210 0.83 -0.0
108,122 - CA264_21210 0.84 -1.1
108,122 - CA264_21210 0.84 +0.0
108,124 - CA264_21210 0.84 -0.0
108,124 - CA264_21210 0.84 -1.4
108,131 + CA264_21210 0.85 +0.4
108,131 + CA264_21210 0.85 +0.4
108,133 + CA264_21210 0.85 -1.0
108,134 - CA264_21210 0.85 -0.2
108,200 - -0.1
108,233 + -0.2
108,252 - -0.8
108,286 - +0.2
108,293 - +0.0
108,302 + +0.0
108,303 - +0.4
108,303 - -0.6
108,319 + -0.3
108,343 + +0.9
108,412 - CA264_21215 0.20 -1.0
108,467 + CA264_21215 0.32 +0.1
108,468 - CA264_21215 0.32 -0.7
108,557 + CA264_21215 0.52 -0.2
108,558 - CA264_21215 0.52 -0.7
108,558 - CA264_21215 0.52 -0.0
108,567 + CA264_21215 0.54 -1.1
108,567 + CA264_21215 0.54 +0.2
108,568 - CA264_21215 0.54 -0.3
108,568 - CA264_21215 0.54 +0.4
108,568 - CA264_21215 0.54 -0.3
108,568 - CA264_21215 0.54 -2.3
108,568 - CA264_21215 0.54 -0.8
108,580 + CA264_21215 0.57 -0.3
108,590 + CA264_21215 0.59 -0.0
108,590 + CA264_21215 0.59 +0.8
108,591 - CA264_21215 0.59 -1.8
108,628 + CA264_21215 0.67 -0.4
108,628 + CA264_21215 0.67 +1.6
108,628 + CA264_21215 0.67 +0.7
108,629 - CA264_21215 0.67 -0.3
108,633 + CA264_21215 0.68 +0.6
108,634 - CA264_21215 0.68 -2.0
108,640 - CA264_21215 0.70 +0.2
108,760 + +1.2
108,760 + -0.7
108,760 + -0.1
108,761 - +0.3
108,842 - -0.2
108,886 + -0.2
108,895 - -0.2
108,908 - -0.1
108,908 - -0.6
108,908 - -0.2
108,908 - -0.1
108,957 + +0.4
108,958 - -0.4
108,964 + +0.6
108,964 + -0.1
108,964 + +0.2
108,984 + +0.3
108,999 - -0.6
109,053 + CA264_21220 0.14 -0.1
109,055 + CA264_21220 0.14 -0.0
109,055 + CA264_21220 0.14 +0.5
109,055 + CA264_21220 0.14 -0.5
109,057 + CA264_21220 0.15 -0.2
109,057 + CA264_21220 0.15 -1.3
109,058 - CA264_21220 0.15 -0.2
109,058 - CA264_21220 0.15 -0.1
109,058 - CA264_21220 0.15 +0.7
109,058 - CA264_21220 0.15 -0.8
109,081 + CA264_21220 0.18 +0.6
109,093 - CA264_21220 0.19 -0.1
109,140 + CA264_21220 0.25 +0.6
109,145 + CA264_21220 0.26 +1.2
109,168 - CA264_21220 0.29 -0.1
109,168 - CA264_21220 0.29 -0.3
109,176 - CA264_21220 0.30 +0.2
109,209 + CA264_21220 0.34 -0.4
109,209 + CA264_21220 0.34 +0.4
109,225 + CA264_21220 0.36 +0.2
109,225 + CA264_21220 0.36 +0.4
109,225 + CA264_21220 0.36 +1.2
109,225 + CA264_21220 0.36 -0.5
109,225 + CA264_21220 0.36 -0.2
109,226 - CA264_21220 0.36 +0.0
109,256 - CA264_21220 0.40 -2.2
109,279 + CA264_21220 0.43 +0.5
109,280 - CA264_21220 0.43 +1.3

Or see this region's nucleotide sequence