Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20690

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20680 and CA264_20685 are separated by 138 nucleotidesCA264_20685 and CA264_20690 are separated by 218 nucleotidesCA264_20690 and CA264_20695 are separated by 74 nucleotides CA264_20680: CA264_20680 - hypothetical protein, at 4,761,438 to 4,761,833 _20680 CA264_20685: CA264_20685 - transposase, at 4,761,972 to 4,762,514 _20685 CA264_20690: CA264_20690 - methylmalonyl-CoA mutase, at 4,762,733 to 4,764,877 _20690 CA264_20695: CA264_20695 - methylmalonyl-CoA mutase, at 4,764,952 to 4,766,796 _20695 Position (kb) 4762 4763 4764 4765Strain fitness (log2 ratio) -2 -1 0 1 2at 4761.751 kb on - strand, within CA264_20680at 4761.799 kb on - strandat 4761.826 kb on - strandat 4761.826 kb on - strandat 4761.826 kb on - strandat 4761.844 kb on - strandat 4761.844 kb on - strandat 4761.851 kb on + strandat 4761.859 kb on + strandat 4761.921 kb on + strandat 4761.922 kb on - strandat 4761.922 kb on - strandat 4761.922 kb on - strandat 4761.966 kb on - strandat 4761.974 kb on - strandat 4761.986 kb on + strandat 4761.987 kb on - strandat 4762.129 kb on - strand, within CA264_20685at 4762.129 kb on - strand, within CA264_20685at 4762.160 kb on + strand, within CA264_20685at 4762.161 kb on - strand, within CA264_20685at 4762.181 kb on + strand, within CA264_20685at 4762.203 kb on + strand, within CA264_20685at 4762.203 kb on + strand, within CA264_20685at 4762.258 kb on + strand, within CA264_20685at 4762.259 kb on - strand, within CA264_20685at 4762.261 kb on - strand, within CA264_20685at 4762.296 kb on - strand, within CA264_20685at 4762.360 kb on + strand, within CA264_20685at 4762.361 kb on - strand, within CA264_20685at 4762.368 kb on + strand, within CA264_20685at 4762.390 kb on + strand, within CA264_20685at 4762.437 kb on + strand, within CA264_20685at 4762.467 kb on - strandat 4762.475 kb on - strandat 4762.502 kb on - strandat 4762.516 kb on + strandat 4762.517 kb on - strandat 4762.517 kb on - strandat 4762.517 kb on - strandat 4762.517 kb on - strandat 4762.521 kb on - strandat 4762.541 kb on - strandat 4762.541 kb on - strandat 4762.542 kb on + strandat 4762.542 kb on + strandat 4762.543 kb on - strandat 4762.582 kb on + strandat 4762.640 kb on - strandat 4762.641 kb on + strandat 4762.641 kb on + strandat 4762.680 kb on + strandat 4762.681 kb on - strandat 4762.869 kb on - strandat 4762.875 kb on - strandat 4762.877 kb on + strandat 4762.877 kb on + strandat 4762.877 kb on + strandat 4762.878 kb on - strandat 4762.878 kb on - strandat 4762.896 kb on - strandat 4763.001 kb on - strand, within CA264_20690at 4763.032 kb on + strand, within CA264_20690at 4763.162 kb on + strand, within CA264_20690at 4763.212 kb on - strand, within CA264_20690at 4763.223 kb on - strand, within CA264_20690at 4763.253 kb on + strand, within CA264_20690at 4763.254 kb on - strand, within CA264_20690at 4763.256 kb on - strand, within CA264_20690at 4763.256 kb on - strand, within CA264_20690at 4763.256 kb on - strand, within CA264_20690at 4763.290 kb on + strand, within CA264_20690at 4763.291 kb on - strand, within CA264_20690at 4763.291 kb on - strand, within CA264_20690at 4763.337 kb on - strand, within CA264_20690at 4763.409 kb on - strand, within CA264_20690at 4763.410 kb on + strand, within CA264_20690at 4763.449 kb on + strand, within CA264_20690at 4763.497 kb on - strand, within CA264_20690at 4763.497 kb on - strand, within CA264_20690at 4763.515 kb on + strand, within CA264_20690at 4763.515 kb on + strand, within CA264_20690at 4763.516 kb on - strand, within CA264_20690at 4763.625 kb on - strand, within CA264_20690at 4763.678 kb on + strand, within CA264_20690at 4763.679 kb on - strand, within CA264_20690at 4763.682 kb on + strand, within CA264_20690at 4763.682 kb on + strand, within CA264_20690at 4763.683 kb on - strand, within CA264_20690at 4763.686 kb on - strand, within CA264_20690at 4763.686 kb on - strand, within CA264_20690at 4763.706 kb on - strand, within CA264_20690at 4763.720 kb on - strand, within CA264_20690at 4763.720 kb on - strand, within CA264_20690at 4763.722 kb on + strand, within CA264_20690at 4763.740 kb on - strand, within CA264_20690at 4763.761 kb on + strand, within CA264_20690at 4763.816 kb on + strand, within CA264_20690at 4763.835 kb on - strand, within CA264_20690at 4763.855 kb on + strand, within CA264_20690at 4763.897 kb on + strand, within CA264_20690at 4763.898 kb on - strand, within CA264_20690at 4763.971 kb on + strand, within CA264_20690at 4763.971 kb on + strand, within CA264_20690at 4763.972 kb on - strand, within CA264_20690at 4764.019 kb on + strand, within CA264_20690at 4764.037 kb on + strand, within CA264_20690at 4764.038 kb on - strand, within CA264_20690at 4764.108 kb on + strand, within CA264_20690at 4764.130 kb on + strand, within CA264_20690at 4764.131 kb on - strand, within CA264_20690at 4764.132 kb on + strand, within CA264_20690at 4764.132 kb on + strand, within CA264_20690at 4764.155 kb on - strand, within CA264_20690at 4764.224 kb on - strand, within CA264_20690at 4764.276 kb on + strand, within CA264_20690at 4764.277 kb on - strand, within CA264_20690at 4764.292 kb on + strand, within CA264_20690at 4764.307 kb on + strand, within CA264_20690at 4764.308 kb on - strand, within CA264_20690at 4764.330 kb on - strand, within CA264_20690at 4764.386 kb on - strand, within CA264_20690at 4764.497 kb on + strand, within CA264_20690at 4764.610 kb on + strand, within CA264_20690at 4764.639 kb on + strand, within CA264_20690at 4764.669 kb on + strandat 4764.669 kb on + strandat 4764.670 kb on - strandat 4764.670 kb on - strandat 4764.696 kb on + strandat 4764.697 kb on - strandat 4764.697 kb on - strandat 4764.840 kb on - strandat 4764.848 kb on + strandat 4764.848 kb on + strandat 4764.849 kb on - strandat 4764.849 kb on - strandat 4764.849 kb on - strandat 4764.850 kb on + strandat 4764.854 kb on + strandat 4764.855 kb on - strandat 4764.855 kb on - strandat 4764.891 kb on + strandat 4764.923 kb on - strandat 4764.923 kb on - strandat 4764.934 kb on + strandat 4764.960 kb on + strandat 4765.093 kb on + strandat 4765.093 kb on + strandat 4765.093 kb on + strandat 4765.094 kb on - strandat 4765.094 kb on - strandat 4765.094 kb on - strandat 4765.146 kb on + strand, within CA264_20695at 4765.147 kb on - strand, within CA264_20695at 4765.148 kb on + strand, within CA264_20695at 4765.148 kb on + strand, within CA264_20695at 4765.148 kb on + strand, within CA264_20695at 4765.149 kb on - strand, within CA264_20695at 4765.194 kb on + strand, within CA264_20695at 4765.197 kb on + strand, within CA264_20695at 4765.197 kb on + strand, within CA264_20695at 4765.198 kb on - strand, within CA264_20695at 4765.198 kb on - strand, within CA264_20695at 4765.198 kb on - strand, within CA264_20695at 4765.227 kb on + strand, within CA264_20695at 4765.227 kb on + strand, within CA264_20695at 4765.228 kb on - strand, within CA264_20695at 4765.291 kb on + strand, within CA264_20695at 4765.292 kb on - strand, within CA264_20695at 4765.318 kb on - strand, within CA264_20695at 4765.318 kb on - strand, within CA264_20695at 4765.324 kb on + strand, within CA264_20695at 4765.324 kb on + strand, within CA264_20695at 4765.398 kb on - strand, within CA264_20695at 4765.432 kb on + strand, within CA264_20695at 4765.432 kb on + strand, within CA264_20695at 4765.434 kb on + strand, within CA264_20695at 4765.435 kb on - strand, within CA264_20695at 4765.562 kb on - strand, within CA264_20695at 4765.577 kb on + strand, within CA264_20695at 4765.578 kb on - strand, within CA264_20695at 4765.578 kb on - strand, within CA264_20695at 4765.665 kb on - strand, within CA264_20695at 4765.688 kb on - strand, within CA264_20695at 4765.699 kb on + strand, within CA264_20695at 4765.699 kb on + strand, within CA264_20695at 4765.699 kb on + strand, within CA264_20695at 4765.699 kb on + strand, within CA264_20695at 4765.700 kb on - strand, within CA264_20695at 4765.700 kb on - strand, within CA264_20695at 4765.703 kb on + strand, within CA264_20695at 4765.704 kb on - strand, within CA264_20695

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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4,761,751 - CA264_20680 0.79 -0.7
4,761,799 - -0.1
4,761,826 - -0.7
4,761,826 - +0.4
4,761,826 - -0.2
4,761,844 - -0.4
4,761,844 - -0.1
4,761,851 + +0.9
4,761,859 + -0.2
4,761,921 + +0.9
4,761,922 - -1.1
4,761,922 - -0.0
4,761,922 - -0.9
4,761,966 - +0.6
4,761,974 - +1.0
4,761,986 + -0.5
4,761,987 - -0.4
4,762,129 - CA264_20685 0.29 -0.8
4,762,129 - CA264_20685 0.29 +0.8
4,762,160 + CA264_20685 0.35 -0.1
4,762,161 - CA264_20685 0.35 +0.2
4,762,181 + CA264_20685 0.38 -0.2
4,762,203 + CA264_20685 0.43 +0.3
4,762,203 + CA264_20685 0.43 -0.8
4,762,258 + CA264_20685 0.53 +0.5
4,762,259 - CA264_20685 0.53 -0.2
4,762,261 - CA264_20685 0.53 -1.4
4,762,296 - CA264_20685 0.60 +0.6
4,762,360 + CA264_20685 0.71 -0.4
4,762,361 - CA264_20685 0.72 -1.0
4,762,368 + CA264_20685 0.73 -0.4
4,762,390 + CA264_20685 0.77 +0.1
4,762,437 + CA264_20685 0.86 +0.1
4,762,467 - +0.4
4,762,475 - -0.0
4,762,502 - -0.5
4,762,516 + -0.2
4,762,517 - -1.8
4,762,517 - -0.2
4,762,517 - -1.5
4,762,517 - -0.3
4,762,521 - -0.2
4,762,541 - +0.0
4,762,541 - -0.2
4,762,542 + -0.4
4,762,542 + -0.2
4,762,543 - -1.0
4,762,582 + +0.3
4,762,640 - +0.1
4,762,641 + -0.0
4,762,641 + +0.1
4,762,680 + +0.6
4,762,681 - -0.2
4,762,869 - -0.8
4,762,875 - -0.8
4,762,877 + -0.1
4,762,877 + +0.6
4,762,877 + -0.4
4,762,878 - -0.4
4,762,878 - -1.2
4,762,896 - -0.8
4,763,001 - CA264_20690 0.12 -0.7
4,763,032 + CA264_20690 0.14 -0.5
4,763,162 + CA264_20690 0.20 +0.7
4,763,212 - CA264_20690 0.22 -1.2
4,763,223 - CA264_20690 0.23 -0.6
4,763,253 + CA264_20690 0.24 -1.8
4,763,254 - CA264_20690 0.24 -0.4
4,763,256 - CA264_20690 0.24 +1.8
4,763,256 - CA264_20690 0.24 +1.1
4,763,256 - CA264_20690 0.24 -0.1
4,763,290 + CA264_20690 0.26 -0.2
4,763,291 - CA264_20690 0.26 +0.1
4,763,291 - CA264_20690 0.26 -1.9
4,763,337 - CA264_20690 0.28 -0.0
4,763,409 - CA264_20690 0.32 -0.0
4,763,410 + CA264_20690 0.32 -0.5
4,763,449 + CA264_20690 0.33 +0.1
4,763,497 - CA264_20690 0.36 -0.4
4,763,497 - CA264_20690 0.36 +0.6
4,763,515 + CA264_20690 0.36 +1.2
4,763,515 + CA264_20690 0.36 -0.1
4,763,516 - CA264_20690 0.37 -2.0
4,763,625 - CA264_20690 0.42 +0.4
4,763,678 + CA264_20690 0.44 -0.0
4,763,679 - CA264_20690 0.44 -1.1
4,763,682 + CA264_20690 0.44 -0.7
4,763,682 + CA264_20690 0.44 +0.3
4,763,683 - CA264_20690 0.44 -0.8
4,763,686 - CA264_20690 0.44 -0.0
4,763,686 - CA264_20690 0.44 +0.5
4,763,706 - CA264_20690 0.45 -1.0
4,763,720 - CA264_20690 0.46 -0.5
4,763,720 - CA264_20690 0.46 +0.9
4,763,722 + CA264_20690 0.46 -0.2
4,763,740 - CA264_20690 0.47 -1.1
4,763,761 + CA264_20690 0.48 +1.8
4,763,816 + CA264_20690 0.50 -0.7
4,763,835 - CA264_20690 0.51 -0.4
4,763,855 + CA264_20690 0.52 -1.4
4,763,897 + CA264_20690 0.54 -1.1
4,763,898 - CA264_20690 0.54 -0.3
4,763,971 + CA264_20690 0.58 -0.4
4,763,971 + CA264_20690 0.58 -0.5
4,763,972 - CA264_20690 0.58 +0.5
4,764,019 + CA264_20690 0.60 +0.0
4,764,037 + CA264_20690 0.61 +1.1
4,764,038 - CA264_20690 0.61 -0.1
4,764,108 + CA264_20690 0.64 -0.1
4,764,130 + CA264_20690 0.65 -0.3
4,764,131 - CA264_20690 0.65 +2.1
4,764,132 + CA264_20690 0.65 -0.2
4,764,132 + CA264_20690 0.65 -0.0
4,764,155 - CA264_20690 0.66 -0.4
4,764,224 - CA264_20690 0.70 -0.1
4,764,276 + CA264_20690 0.72 -0.1
4,764,277 - CA264_20690 0.72 -0.7
4,764,292 + CA264_20690 0.73 -0.8
4,764,307 + CA264_20690 0.73 -0.4
4,764,308 - CA264_20690 0.73 -0.2
4,764,330 - CA264_20690 0.74 -0.4
4,764,386 - CA264_20690 0.77 +0.6
4,764,497 + CA264_20690 0.82 +0.4
4,764,610 + CA264_20690 0.88 +0.1
4,764,639 + CA264_20690 0.89 -0.1
4,764,669 + -0.1
4,764,669 + -0.3
4,764,670 - +0.7
4,764,670 - -0.6
4,764,696 + +0.3
4,764,697 - +1.4
4,764,697 - +0.1
4,764,840 - -0.9
4,764,848 + -0.3
4,764,848 + -0.1
4,764,849 - -0.8
4,764,849 - +0.2
4,764,849 - -0.5
4,764,850 + -0.5
4,764,854 + -0.1
4,764,855 - -0.0
4,764,855 - +0.1
4,764,891 + -0.3
4,764,923 - -0.4
4,764,923 - +0.4
4,764,934 + -1.1
4,764,960 + -0.9
4,765,093 + -1.9
4,765,093 + +0.4
4,765,093 + +0.0
4,765,094 - -1.1
4,765,094 - -0.4
4,765,094 - +1.9
4,765,146 + CA264_20695 0.11 +0.2
4,765,147 - CA264_20695 0.11 +0.6
4,765,148 + CA264_20695 0.11 +0.4
4,765,148 + CA264_20695 0.11 +0.4
4,765,148 + CA264_20695 0.11 +0.3
4,765,149 - CA264_20695 0.11 -0.1
4,765,194 + CA264_20695 0.13 -1.1
4,765,197 + CA264_20695 0.13 -0.7
4,765,197 + CA264_20695 0.13 -1.4
4,765,198 - CA264_20695 0.13 -1.3
4,765,198 - CA264_20695 0.13 -1.5
4,765,198 - CA264_20695 0.13 -1.1
4,765,227 + CA264_20695 0.15 -0.2
4,765,227 + CA264_20695 0.15 +0.3
4,765,228 - CA264_20695 0.15 +0.2
4,765,291 + CA264_20695 0.18 +0.2
4,765,292 - CA264_20695 0.18 +0.2
4,765,318 - CA264_20695 0.20 -0.7
4,765,318 - CA264_20695 0.20 +0.2
4,765,324 + CA264_20695 0.20 +0.3
4,765,324 + CA264_20695 0.20 -0.6
4,765,398 - CA264_20695 0.24 -0.8
4,765,432 + CA264_20695 0.26 +0.1
4,765,432 + CA264_20695 0.26 -0.4
4,765,434 + CA264_20695 0.26 +0.6
4,765,435 - CA264_20695 0.26 -1.1
4,765,562 - CA264_20695 0.33 +0.5
4,765,577 + CA264_20695 0.34 +0.5
4,765,578 - CA264_20695 0.34 +0.1
4,765,578 - CA264_20695 0.34 +0.4
4,765,665 - CA264_20695 0.39 -0.1
4,765,688 - CA264_20695 0.40 +0.1
4,765,699 + CA264_20695 0.40 -1.5
4,765,699 + CA264_20695 0.40 -0.1
4,765,699 + CA264_20695 0.40 +0.6
4,765,699 + CA264_20695 0.40 -0.9
4,765,700 - CA264_20695 0.41 +0.0
4,765,700 - CA264_20695 0.41 -0.7
4,765,703 + CA264_20695 0.41 +0.3
4,765,704 - CA264_20695 0.41 +0.2

Or see this region's nucleotide sequence