Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20135

Experiment: m.b. Chloride 750 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_20130 and CA264_20135 are separated by 501 nucleotidesCA264_20135 and CA264_20140 overlap by 4 nucleotides CA264_20130: CA264_20130 - hypothetical protein, at 4,641,083 to 4,641,619 _20130 CA264_20135: CA264_20135 - hypothetical protein, at 4,642,121 to 4,643,182 _20135 CA264_20140: CA264_20140 - acriflavin resistance protein, at 4,643,179 to 4,646,277 _20140 Position (kb) 4642 4643 4644Strain fitness (log2 ratio) -2 -1 0 1at 4641.138 kb on - strand, within CA264_20130at 4641.174 kb on - strand, within CA264_20130at 4641.182 kb on + strand, within CA264_20130at 4641.256 kb on + strand, within CA264_20130at 4641.269 kb on + strand, within CA264_20130at 4641.269 kb on + strand, within CA264_20130at 4641.280 kb on - strand, within CA264_20130at 4641.323 kb on + strand, within CA264_20130at 4641.324 kb on - strand, within CA264_20130at 4641.324 kb on - strand, within CA264_20130at 4641.325 kb on + strand, within CA264_20130at 4641.325 kb on + strand, within CA264_20130at 4641.329 kb on + strand, within CA264_20130at 4641.380 kb on + strand, within CA264_20130at 4641.396 kb on + strand, within CA264_20130at 4641.449 kb on + strand, within CA264_20130at 4641.449 kb on + strand, within CA264_20130at 4641.449 kb on + strand, within CA264_20130at 4641.450 kb on - strand, within CA264_20130at 4641.450 kb on - strand, within CA264_20130at 4641.450 kb on - strand, within CA264_20130at 4641.527 kb on - strand, within CA264_20130at 4641.537 kb on + strand, within CA264_20130at 4641.693 kb on + strandat 4641.761 kb on + strandat 4641.762 kb on - strandat 4641.855 kb on + strandat 4641.856 kb on - strandat 4641.856 kb on - strandat 4641.859 kb on + strandat 4641.860 kb on - strandat 4641.860 kb on - strandat 4641.860 kb on - strandat 4641.860 kb on - strandat 4641.870 kb on - strandat 4641.884 kb on - strandat 4641.919 kb on - strandat 4641.946 kb on + strandat 4641.946 kb on + strandat 4641.947 kb on - strandat 4641.947 kb on - strandat 4641.947 kb on - strandat 4642.061 kb on + strandat 4642.067 kb on + strandat 4642.067 kb on + strandat 4642.067 kb on + strandat 4642.068 kb on - strandat 4642.068 kb on - strandat 4642.068 kb on - strandat 4642.078 kb on + strandat 4642.104 kb on + strandat 4642.105 kb on - strandat 4642.106 kb on + strandat 4642.146 kb on + strandat 4642.149 kb on + strandat 4642.152 kb on + strandat 4642.422 kb on - strand, within CA264_20135at 4642.434 kb on + strand, within CA264_20135at 4642.539 kb on + strand, within CA264_20135at 4642.557 kb on + strand, within CA264_20135at 4642.608 kb on - strand, within CA264_20135at 4642.662 kb on + strand, within CA264_20135at 4642.663 kb on - strand, within CA264_20135at 4642.693 kb on - strand, within CA264_20135at 4642.696 kb on + strand, within CA264_20135at 4642.697 kb on - strand, within CA264_20135at 4642.697 kb on - strand, within CA264_20135at 4642.697 kb on - strand, within CA264_20135at 4642.699 kb on - strand, within CA264_20135at 4642.699 kb on - strand, within CA264_20135at 4642.853 kb on + strand, within CA264_20135at 4642.937 kb on - strand, within CA264_20135at 4642.937 kb on - strand, within CA264_20135at 4642.954 kb on - strand, within CA264_20135at 4642.970 kb on - strand, within CA264_20135at 4642.984 kb on - strand, within CA264_20135at 4642.998 kb on - strand, within CA264_20135at 4643.046 kb on + strand, within CA264_20135at 4643.047 kb on - strand, within CA264_20135at 4643.076 kb on + strandat 4643.077 kb on - strandat 4643.077 kb on - strandat 4643.172 kb on + strandat 4643.201 kb on + strandat 4643.217 kb on - strandat 4643.250 kb on - strandat 4643.386 kb on + strandat 4643.386 kb on + strandat 4643.409 kb on - strandat 4643.462 kb on + strandat 4643.635 kb on + strand, within CA264_20140at 4643.636 kb on - strand, within CA264_20140at 4643.653 kb on + strand, within CA264_20140at 4643.654 kb on - strand, within CA264_20140at 4643.654 kb on - strand, within CA264_20140at 4643.656 kb on - strand, within CA264_20140at 4643.666 kb on + strand, within CA264_20140at 4643.713 kb on + strand, within CA264_20140at 4643.742 kb on + strand, within CA264_20140at 4643.804 kb on + strand, within CA264_20140at 4643.884 kb on + strand, within CA264_20140at 4643.884 kb on + strand, within CA264_20140at 4643.886 kb on + strand, within CA264_20140at 4643.886 kb on + strand, within CA264_20140at 4643.887 kb on - strand, within CA264_20140at 4644.164 kb on + strand, within CA264_20140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
remove
4,641,138 - CA264_20130 0.10 -0.0
4,641,174 - CA264_20130 0.17 -0.2
4,641,182 + CA264_20130 0.18 -0.0
4,641,256 + CA264_20130 0.32 +0.9
4,641,269 + CA264_20130 0.35 +0.6
4,641,269 + CA264_20130 0.35 -0.1
4,641,280 - CA264_20130 0.37 +0.1
4,641,323 + CA264_20130 0.45 +0.4
4,641,324 - CA264_20130 0.45 +0.1
4,641,324 - CA264_20130 0.45 +0.1
4,641,325 + CA264_20130 0.45 -1.4
4,641,325 + CA264_20130 0.45 -0.2
4,641,329 + CA264_20130 0.46 +0.4
4,641,380 + CA264_20130 0.55 +1.3
4,641,396 + CA264_20130 0.58 -1.3
4,641,449 + CA264_20130 0.68 -0.1
4,641,449 + CA264_20130 0.68 -0.0
4,641,449 + CA264_20130 0.68 -0.4
4,641,450 - CA264_20130 0.68 -0.7
4,641,450 - CA264_20130 0.68 -0.1
4,641,450 - CA264_20130 0.68 -0.5
4,641,527 - CA264_20130 0.83 +0.4
4,641,537 + CA264_20130 0.85 +0.2
4,641,693 + -0.7
4,641,761 + +0.1
4,641,762 - -0.9
4,641,855 + +0.2
4,641,856 - -0.6
4,641,856 - -1.1
4,641,859 + -0.5
4,641,860 - -0.7
4,641,860 - -0.2
4,641,860 - -0.9
4,641,860 - -0.9
4,641,870 - +0.0
4,641,884 - +0.9
4,641,919 - +0.8
4,641,946 + -0.9
4,641,946 + -0.3
4,641,947 - +1.5
4,641,947 - -1.0
4,641,947 - -0.4
4,642,061 + -1.2
4,642,067 + -0.9
4,642,067 + +0.9
4,642,067 + -0.5
4,642,068 - -1.4
4,642,068 - -0.2
4,642,068 - -0.7
4,642,078 + -0.6
4,642,104 + +0.6
4,642,105 - -0.2
4,642,106 + -0.1
4,642,146 + -0.4
4,642,149 + -1.5
4,642,152 + +0.7
4,642,422 - CA264_20135 0.28 +0.2
4,642,434 + CA264_20135 0.29 +0.1
4,642,539 + CA264_20135 0.39 +0.5
4,642,557 + CA264_20135 0.41 -0.3
4,642,608 - CA264_20135 0.46 +0.9
4,642,662 + CA264_20135 0.51 -0.6
4,642,663 - CA264_20135 0.51 -0.8
4,642,693 - CA264_20135 0.54 +0.5
4,642,696 + CA264_20135 0.54 -0.2
4,642,697 - CA264_20135 0.54 -0.1
4,642,697 - CA264_20135 0.54 +0.1
4,642,697 - CA264_20135 0.54 +0.1
4,642,699 - CA264_20135 0.54 -1.0
4,642,699 - CA264_20135 0.54 -2.4
4,642,853 + CA264_20135 0.69 -0.4
4,642,937 - CA264_20135 0.77 -0.3
4,642,937 - CA264_20135 0.77 +1.3
4,642,954 - CA264_20135 0.78 -0.1
4,642,970 - CA264_20135 0.80 -0.6
4,642,984 - CA264_20135 0.81 +0.0
4,642,998 - CA264_20135 0.83 +0.1
4,643,046 + CA264_20135 0.87 +0.4
4,643,047 - CA264_20135 0.87 -0.3
4,643,076 + +0.2
4,643,077 - -0.6
4,643,077 - +0.3
4,643,172 + -0.4
4,643,201 + -0.0
4,643,217 - -0.2
4,643,250 - +0.5
4,643,386 + +0.9
4,643,386 + +0.2
4,643,409 - +0.1
4,643,462 + +0.4
4,643,635 + CA264_20140 0.15 -0.7
4,643,636 - CA264_20140 0.15 -0.1
4,643,653 + CA264_20140 0.15 -0.6
4,643,654 - CA264_20140 0.15 -0.1
4,643,654 - CA264_20140 0.15 -0.2
4,643,656 - CA264_20140 0.15 +1.0
4,643,666 + CA264_20140 0.16 +0.9
4,643,713 + CA264_20140 0.17 -0.8
4,643,742 + CA264_20140 0.18 +0.6
4,643,804 + CA264_20140 0.20 -1.6
4,643,884 + CA264_20140 0.23 +1.1
4,643,884 + CA264_20140 0.23 +0.1
4,643,886 + CA264_20140 0.23 -0.1
4,643,886 + CA264_20140 0.23 +0.9
4,643,887 - CA264_20140 0.23 -0.4
4,644,164 + CA264_20140 0.32 +0.0

Or see this region's nucleotide sequence