Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18870

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18865 and CA264_18870 are separated by 109 nucleotidesCA264_18870 and CA264_18875 are separated by 127 nucleotidesCA264_18875 and CA264_18880 are separated by 37 nucleotides CA264_18865: CA264_18865 - monooxygenase, at 4,378,657 to 4,379,799 _18865 CA264_18870: CA264_18870 - hypothetical protein, at 4,379,909 to 4,380,424 _18870 CA264_18875: CA264_18875 - N-acetyltransferase, at 4,380,552 to 4,381,082 _18875 CA264_18880: CA264_18880 - hypothetical protein, at 4,381,120 to 4,381,404 _18880 Position (kb) 4379 4380 4381Strain fitness (log2 ratio) -2 -1 0 1at 4378.934 kb on - strand, within CA264_18865at 4378.934 kb on - strand, within CA264_18865at 4378.979 kb on + strand, within CA264_18865at 4379.016 kb on - strand, within CA264_18865at 4379.016 kb on - strand, within CA264_18865at 4379.026 kb on - strand, within CA264_18865at 4379.122 kb on - strand, within CA264_18865at 4379.133 kb on - strand, within CA264_18865at 4379.213 kb on + strand, within CA264_18865at 4379.214 kb on - strand, within CA264_18865at 4379.214 kb on - strand, within CA264_18865at 4379.219 kb on + strand, within CA264_18865at 4379.220 kb on - strand, within CA264_18865at 4379.456 kb on + strand, within CA264_18865at 4379.456 kb on + strand, within CA264_18865at 4379.526 kb on + strand, within CA264_18865at 4379.527 kb on - strand, within CA264_18865at 4379.623 kb on + strand, within CA264_18865at 4379.623 kb on + strand, within CA264_18865at 4379.809 kb on - strandat 4379.809 kb on - strandat 4379.819 kb on + strandat 4379.819 kb on + strandat 4379.838 kb on - strandat 4379.854 kb on + strandat 4379.860 kb on + strandat 4379.873 kb on + strandat 4379.893 kb on + strandat 4379.920 kb on + strandat 4379.921 kb on - strandat 4379.922 kb on + strandat 4379.944 kb on - strandat 4380.042 kb on + strand, within CA264_18870at 4380.087 kb on - strand, within CA264_18870at 4380.209 kb on + strand, within CA264_18870at 4380.209 kb on + strand, within CA264_18870at 4380.209 kb on + strand, within CA264_18870at 4380.209 kb on + strand, within CA264_18870at 4380.210 kb on - strand, within CA264_18870at 4380.210 kb on - strand, within CA264_18870at 4380.210 kb on - strand, within CA264_18870at 4380.219 kb on - strand, within CA264_18870at 4380.219 kb on - strand, within CA264_18870at 4380.248 kb on + strand, within CA264_18870at 4380.265 kb on + strand, within CA264_18870at 4380.265 kb on + strand, within CA264_18870at 4380.276 kb on - strand, within CA264_18870at 4380.293 kb on - strand, within CA264_18870at 4380.307 kb on + strand, within CA264_18870at 4380.386 kb on + strandat 4380.388 kb on + strandat 4380.388 kb on + strandat 4380.423 kb on - strandat 4380.469 kb on + strandat 4380.525 kb on + strandat 4380.526 kb on - strandat 4380.575 kb on + strandat 4380.575 kb on + strandat 4380.576 kb on - strandat 4380.642 kb on + strandat 4380.686 kb on + strand, within CA264_18875at 4380.694 kb on - strand, within CA264_18875at 4380.735 kb on + strand, within CA264_18875at 4380.736 kb on - strand, within CA264_18875at 4380.772 kb on - strand, within CA264_18875at 4380.990 kb on + strand, within CA264_18875at 4380.996 kb on + strand, within CA264_18875at 4380.996 kb on + strand, within CA264_18875at 4381.042 kb on - strandat 4381.047 kb on + strandat 4381.048 kb on - strandat 4381.133 kb on + strandat 4381.137 kb on + strandat 4381.138 kb on - strandat 4381.138 kb on - strandat 4381.151 kb on + strand, within CA264_18880at 4381.151 kb on + strand, within CA264_18880at 4381.300 kb on + strand, within CA264_18880at 4381.338 kb on + strand, within CA264_18880at 4381.354 kb on - strand, within CA264_18880at 4381.362 kb on - strand, within CA264_18880at 4381.380 kb on - strandat 4381.392 kb on - strandat 4381.407 kb on + strandat 4381.408 kb on - strandat 4381.410 kb on - strandat 4381.410 kb on - strandat 4381.410 kb on - strandat 4381.410 kb on - strandat 4381.410 kb on - strandat 4381.412 kb on - strandat 4381.415 kb on + strandat 4381.416 kb on - strandat 4381.416 kb on - strandat 4381.416 kb on - strandat 4381.419 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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4,378,934 - CA264_18865 0.24 -1.1
4,378,934 - CA264_18865 0.24 -0.5
4,378,979 + CA264_18865 0.28 -0.3
4,379,016 - CA264_18865 0.31 -0.4
4,379,016 - CA264_18865 0.31 +1.5
4,379,026 - CA264_18865 0.32 +0.9
4,379,122 - CA264_18865 0.41 +0.6
4,379,133 - CA264_18865 0.42 +0.5
4,379,213 + CA264_18865 0.49 +0.3
4,379,214 - CA264_18865 0.49 -0.1
4,379,214 - CA264_18865 0.49 +1.0
4,379,219 + CA264_18865 0.49 -0.5
4,379,220 - CA264_18865 0.49 +0.3
4,379,456 + CA264_18865 0.70 +0.4
4,379,456 + CA264_18865 0.70 -0.8
4,379,526 + CA264_18865 0.76 -0.4
4,379,527 - CA264_18865 0.76 -0.1
4,379,623 + CA264_18865 0.85 -0.1
4,379,623 + CA264_18865 0.85 -0.4
4,379,809 - +0.9
4,379,809 - -0.0
4,379,819 + +0.0
4,379,819 + +0.9
4,379,838 - +0.3
4,379,854 + +1.4
4,379,860 + -0.3
4,379,873 + -0.1
4,379,893 + -0.5
4,379,920 + +1.2
4,379,921 - +0.5
4,379,922 + -0.3
4,379,944 - -0.1
4,380,042 + CA264_18870 0.26 -2.0
4,380,087 - CA264_18870 0.34 +0.2
4,380,209 + CA264_18870 0.58 +0.5
4,380,209 + CA264_18870 0.58 -0.4
4,380,209 + CA264_18870 0.58 -1.8
4,380,209 + CA264_18870 0.58 +0.5
4,380,210 - CA264_18870 0.58 +0.3
4,380,210 - CA264_18870 0.58 +0.4
4,380,210 - CA264_18870 0.58 -0.6
4,380,219 - CA264_18870 0.60 +0.3
4,380,219 - CA264_18870 0.60 +0.7
4,380,248 + CA264_18870 0.66 -1.9
4,380,265 + CA264_18870 0.69 -1.7
4,380,265 + CA264_18870 0.69 +1.5
4,380,276 - CA264_18870 0.71 +0.1
4,380,293 - CA264_18870 0.74 -0.4
4,380,307 + CA264_18870 0.77 +0.3
4,380,386 + +0.2
4,380,388 + -0.4
4,380,388 + -1.3
4,380,423 - +0.7
4,380,469 + -0.4
4,380,525 + +0.4
4,380,526 - -0.0
4,380,575 + +0.1
4,380,575 + +0.9
4,380,576 - +1.0
4,380,642 + +0.9
4,380,686 + CA264_18875 0.25 +0.4
4,380,694 - CA264_18875 0.27 -0.6
4,380,735 + CA264_18875 0.34 +0.1
4,380,736 - CA264_18875 0.35 -0.5
4,380,772 - CA264_18875 0.41 +0.0
4,380,990 + CA264_18875 0.82 +0.1
4,380,996 + CA264_18875 0.84 -0.4
4,380,996 + CA264_18875 0.84 +0.4
4,381,042 - -0.2
4,381,047 + -0.1
4,381,048 - -1.1
4,381,133 + -0.2
4,381,137 + +1.6
4,381,138 - +0.2
4,381,138 - +0.2
4,381,151 + CA264_18880 0.11 +0.7
4,381,151 + CA264_18880 0.11 +0.2
4,381,300 + CA264_18880 0.63 -1.3
4,381,338 + CA264_18880 0.76 -0.2
4,381,354 - CA264_18880 0.82 +1.1
4,381,362 - CA264_18880 0.85 -1.0
4,381,380 - -0.9
4,381,392 - -0.0
4,381,407 + +0.4
4,381,408 - -0.2
4,381,410 - -1.0
4,381,410 - +0.1
4,381,410 - -1.3
4,381,410 - +0.4
4,381,410 - -0.0
4,381,412 - -0.3
4,381,415 + -0.0
4,381,416 - -0.5
4,381,416 - +0.9
4,381,416 - -1.3
4,381,419 + -0.6

Or see this region's nucleotide sequence