Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18210

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18205 and CA264_18210 are separated by 178 nucleotidesCA264_18210 and CA264_18215 are separated by 321 nucleotidesCA264_18215 and CA264_18220 are separated by 178 nucleotides CA264_18205: CA264_18205 - porphobilinogen synthase, at 4,235,310 to 4,236,281 _18205 CA264_18210: CA264_18210 - L-serine dehydratase, iron-sulfur-dependent subunit alpha, at 4,236,460 to 4,237,371 _18210 CA264_18215: CA264_18215 - hypothetical protein, at 4,237,693 to 4,238,127 _18215 CA264_18220: CA264_18220 - acylphosphatase, at 4,238,306 to 4,238,590 _18220 Position (kb) 4236 4237 4238Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4236.282 kb on - strandat 4236.338 kb on + strandat 4236.338 kb on + strandat 4236.638 kb on - strand, within CA264_18210at 4236.647 kb on - strand, within CA264_18210at 4236.706 kb on + strand, within CA264_18210at 4236.725 kb on - strand, within CA264_18210at 4236.725 kb on - strand, within CA264_18210at 4236.725 kb on - strand, within CA264_18210at 4236.935 kb on - strand, within CA264_18210at 4236.952 kb on + strand, within CA264_18210at 4237.134 kb on + strand, within CA264_18210at 4237.239 kb on + strand, within CA264_18210at 4237.371 kb on + strandat 4237.371 kb on + strandat 4237.372 kb on - strandat 4237.372 kb on - strandat 4237.428 kb on - strandat 4237.478 kb on + strandat 4237.557 kb on + strandat 4237.591 kb on - strandat 4237.614 kb on - strandat 4237.625 kb on + strandat 4237.625 kb on + strandat 4237.625 kb on + strandat 4237.666 kb on - strandat 4237.668 kb on + strandat 4237.669 kb on - strandat 4237.678 kb on + strandat 4237.679 kb on - strandat 4237.836 kb on + strand, within CA264_18215at 4237.885 kb on + strand, within CA264_18215at 4237.886 kb on - strand, within CA264_18215at 4237.886 kb on - strand, within CA264_18215at 4237.933 kb on + strand, within CA264_18215at 4237.942 kb on + strand, within CA264_18215at 4238.111 kb on - strandat 4238.183 kb on - strandat 4238.188 kb on - strandat 4238.208 kb on + strandat 4238.209 kb on - strandat 4238.302 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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4,236,282 - +2.5
4,236,338 + -1.2
4,236,338 + -2.9
4,236,638 - CA264_18210 0.20 -3.4
4,236,647 - CA264_18210 0.21 -2.5
4,236,706 + CA264_18210 0.27 -2.2
4,236,725 - CA264_18210 0.29 +0.9
4,236,725 - CA264_18210 0.29 -2.5
4,236,725 - CA264_18210 0.29 -1.9
4,236,935 - CA264_18210 0.52 -0.3
4,236,952 + CA264_18210 0.54 -1.7
4,237,134 + CA264_18210 0.74 -2.8
4,237,239 + CA264_18210 0.85 -1.8
4,237,371 + -1.0
4,237,371 + -0.3
4,237,372 - -0.4
4,237,372 - -0.0
4,237,428 - -0.8
4,237,478 + +0.0
4,237,557 + -0.3
4,237,591 - -0.7
4,237,614 - -0.3
4,237,625 + +0.3
4,237,625 + +0.4
4,237,625 + -0.2
4,237,666 - -0.6
4,237,668 + +0.5
4,237,669 - +2.5
4,237,678 + +0.2
4,237,679 - -0.1
4,237,836 + CA264_18215 0.33 +0.7
4,237,885 + CA264_18215 0.44 -0.2
4,237,886 - CA264_18215 0.44 +1.5
4,237,886 - CA264_18215 0.44 +0.6
4,237,933 + CA264_18215 0.55 -0.8
4,237,942 + CA264_18215 0.57 -0.5
4,238,111 - -1.0
4,238,183 - -0.3
4,238,188 - -0.5
4,238,208 + +0.5
4,238,209 - +0.4
4,238,302 + +0.0

Or see this region's nucleotide sequence