Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17905

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17900 and CA264_17905 are separated by 3 nucleotidesCA264_17905 and CA264_17910 are separated by 2 nucleotides CA264_17900: CA264_17900 - UDP-N-acetyl-D-galactosamine dehydrogenase, at 4,161,358 to 4,162,647 _17900 CA264_17905: CA264_17905 - UDP-glucose 4-epimerase GalE, at 4,162,651 to 4,163,685 _17905 CA264_17910: CA264_17910 - dTDP-glucose 4,6-dehydratase, at 4,163,688 to 4,164,737 _17910 Position (kb) 4162 4163 4164Strain fitness (log2 ratio) -3 -2 -1 0 1at 4161.706 kb on + strand, within CA264_17900at 4161.706 kb on + strand, within CA264_17900at 4161.706 kb on + strand, within CA264_17900at 4161.804 kb on + strand, within CA264_17900at 4161.804 kb on + strand, within CA264_17900at 4161.844 kb on - strand, within CA264_17900at 4161.844 kb on - strand, within CA264_17900at 4161.922 kb on + strand, within CA264_17900at 4161.935 kb on + strand, within CA264_17900at 4161.963 kb on + strand, within CA264_17900at 4162.053 kb on + strand, within CA264_17900at 4162.072 kb on + strand, within CA264_17900at 4162.166 kb on - strand, within CA264_17900at 4162.166 kb on - strand, within CA264_17900at 4162.169 kb on + strand, within CA264_17900at 4162.174 kb on + strand, within CA264_17900at 4162.174 kb on + strand, within CA264_17900at 4162.175 kb on - strand, within CA264_17900at 4162.175 kb on - strand, within CA264_17900at 4162.175 kb on - strand, within CA264_17900at 4162.175 kb on - strand, within CA264_17900at 4162.177 kb on - strand, within CA264_17900at 4162.196 kb on - strand, within CA264_17900at 4162.210 kb on - strand, within CA264_17900at 4162.237 kb on - strand, within CA264_17900at 4162.391 kb on + strand, within CA264_17900at 4162.429 kb on + strand, within CA264_17900at 4162.434 kb on + strand, within CA264_17900at 4162.495 kb on + strand, within CA264_17900at 4162.496 kb on - strand, within CA264_17900at 4162.531 kb on + strandat 4162.552 kb on + strandat 4162.553 kb on - strandat 4162.553 kb on - strandat 4162.628 kb on + strandat 4162.629 kb on - strandat 4162.629 kb on - strandat 4162.634 kb on - strandat 4162.644 kb on - strandat 4162.644 kb on - strandat 4162.644 kb on - strandat 4162.690 kb on + strandat 4162.691 kb on - strandat 4162.692 kb on + strandat 4162.693 kb on - strandat 4162.712 kb on + strandat 4162.722 kb on - strandat 4162.733 kb on - strandat 4162.799 kb on + strand, within CA264_17905at 4162.800 kb on - strand, within CA264_17905at 4162.800 kb on - strand, within CA264_17905at 4162.909 kb on + strand, within CA264_17905at 4162.910 kb on - strand, within CA264_17905at 4162.911 kb on + strand, within CA264_17905at 4162.912 kb on - strand, within CA264_17905at 4162.920 kb on - strandat 4162.948 kb on + strand, within CA264_17905at 4162.948 kb on + strand, within CA264_17905at 4162.948 kb on + strand, within CA264_17905at 4163.011 kb on - strand, within CA264_17905at 4163.044 kb on + strand, within CA264_17905at 4163.044 kb on + strand, within CA264_17905at 4163.044 kb on + strand, within CA264_17905at 4163.175 kb on - strand, within CA264_17905at 4163.175 kb on - strand, within CA264_17905at 4163.275 kb on - strand, within CA264_17905at 4163.292 kb on - strand, within CA264_17905at 4163.362 kb on + strand, within CA264_17905at 4163.362 kb on + strand, within CA264_17905at 4163.363 kb on - strand, within CA264_17905at 4163.527 kb on + strand, within CA264_17905at 4163.579 kb on + strand, within CA264_17905at 4163.579 kb on + strand, within CA264_17905at 4163.579 kb on + strand, within CA264_17905at 4163.586 kb on - strandat 4163.635 kb on - strandat 4163.661 kb on - strandat 4164.685 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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4,161,706 + CA264_17900 0.27 +0.1
4,161,706 + CA264_17900 0.27 -0.3
4,161,706 + CA264_17900 0.27 +0.1
4,161,804 + CA264_17900 0.35 +0.9
4,161,804 + CA264_17900 0.35 +0.9
4,161,844 - CA264_17900 0.38 +0.7
4,161,844 - CA264_17900 0.38 +1.3
4,161,922 + CA264_17900 0.44 -0.0
4,161,935 + CA264_17900 0.45 +0.6
4,161,963 + CA264_17900 0.47 -1.3
4,162,053 + CA264_17900 0.54 -0.1
4,162,072 + CA264_17900 0.55 -0.6
4,162,166 - CA264_17900 0.63 +0.5
4,162,166 - CA264_17900 0.63 -0.3
4,162,169 + CA264_17900 0.63 +0.4
4,162,174 + CA264_17900 0.63 +0.4
4,162,174 + CA264_17900 0.63 -1.6
4,162,175 - CA264_17900 0.63 -1.0
4,162,175 - CA264_17900 0.63 -1.1
4,162,175 - CA264_17900 0.63 -0.9
4,162,175 - CA264_17900 0.63 -0.8
4,162,177 - CA264_17900 0.63 +0.2
4,162,196 - CA264_17900 0.65 +0.6
4,162,210 - CA264_17900 0.66 +0.1
4,162,237 - CA264_17900 0.68 -0.7
4,162,391 + CA264_17900 0.80 -2.2
4,162,429 + CA264_17900 0.83 +0.8
4,162,434 + CA264_17900 0.83 -0.6
4,162,495 + CA264_17900 0.88 +0.6
4,162,496 - CA264_17900 0.88 -0.3
4,162,531 + -0.2
4,162,552 + -0.7
4,162,553 - -0.1
4,162,553 - -0.8
4,162,628 + -0.3
4,162,629 - -1.0
4,162,629 - -0.2
4,162,634 - +1.1
4,162,644 - +0.5
4,162,644 - -0.3
4,162,644 - -0.3
4,162,690 + -0.4
4,162,691 - +0.1
4,162,692 + -1.2
4,162,693 - -3.1
4,162,712 + -0.1
4,162,722 - +0.3
4,162,733 - +1.5
4,162,799 + CA264_17905 0.14 +0.1
4,162,800 - CA264_17905 0.14 -0.3
4,162,800 - CA264_17905 0.14 -0.6
4,162,909 + CA264_17905 0.25 +0.0
4,162,910 - CA264_17905 0.25 -1.1
4,162,911 + CA264_17905 0.25 +0.9
4,162,912 - CA264_17905 0.25 -1.6
4,162,920 - +0.2
4,162,948 + CA264_17905 0.29 -2.6
4,162,948 + CA264_17905 0.29 -1.1
4,162,948 + CA264_17905 0.29 -0.7
4,163,011 - CA264_17905 0.35 +0.8
4,163,044 + CA264_17905 0.38 -0.9
4,163,044 + CA264_17905 0.38 -0.3
4,163,044 + CA264_17905 0.38 +0.2
4,163,175 - CA264_17905 0.51 -1.7
4,163,175 - CA264_17905 0.51 -0.4
4,163,275 - CA264_17905 0.60 +0.8
4,163,292 - CA264_17905 0.62 +0.2
4,163,362 + CA264_17905 0.69 -0.3
4,163,362 + CA264_17905 0.69 +1.2
4,163,363 - CA264_17905 0.69 -0.7
4,163,527 + CA264_17905 0.85 +0.1
4,163,579 + CA264_17905 0.90 +0.3
4,163,579 + CA264_17905 0.90 -0.5
4,163,579 + CA264_17905 0.90 +0.9
4,163,586 - -0.5
4,163,635 - -0.9
4,163,661 - +0.3
4,164,685 + +0.1

Or see this region's nucleotide sequence