Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17010

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17000 and CA264_17005 are separated by 68 nucleotidesCA264_17005 and CA264_17010 are separated by 303 nucleotidesCA264_17010 and CA264_17015 are separated by 174 nucleotides CA264_17000: CA264_17000 - phytoene dehydrogenase, at 3,954,694 to 3,956,196 _17000 CA264_17005: CA264_17005 - hypothetical protein, at 3,956,265 to 3,956,705 _17005 CA264_17010: CA264_17010 - helicase SNF2, at 3,957,009 to 3,959,945 _17010 CA264_17015: CA264_17015 - ABC transporter permease, at 3,960,120 to 3,961,343 _17015 Position (kb) 3957 3958 3959 3960Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3956.202 kb on - strandat 3956.205 kb on - strandat 3956.207 kb on - strandat 3956.215 kb on - strandat 3956.241 kb on - strandat 3956.243 kb on + strandat 3956.266 kb on + strandat 3956.347 kb on - strand, within CA264_17005at 3956.368 kb on + strand, within CA264_17005at 3956.372 kb on + strand, within CA264_17005at 3956.372 kb on + strand, within CA264_17005at 3956.372 kb on + strand, within CA264_17005at 3956.373 kb on - strand, within CA264_17005at 3956.375 kb on + strand, within CA264_17005at 3956.375 kb on + strand, within CA264_17005at 3956.375 kb on + strand, within CA264_17005at 3956.375 kb on + strand, within CA264_17005at 3956.469 kb on + strand, within CA264_17005at 3956.476 kb on + strand, within CA264_17005at 3956.493 kb on + strand, within CA264_17005at 3956.628 kb on - strand, within CA264_17005at 3956.683 kb on + strandat 3956.710 kb on + strandat 3956.711 kb on - strandat 3956.711 kb on - strandat 3956.712 kb on + strandat 3956.713 kb on - strandat 3956.748 kb on + strandat 3956.753 kb on + strandat 3956.756 kb on - strandat 3956.805 kb on + strandat 3956.983 kb on + strandat 3957.117 kb on + strandat 3957.118 kb on - strandat 3957.129 kb on + strandat 3957.130 kb on - strandat 3957.155 kb on - strandat 3957.162 kb on + strandat 3957.242 kb on + strandat 3957.242 kb on + strandat 3957.942 kb on + strand, within CA264_17010at 3957.942 kb on + strand, within CA264_17010at 3957.943 kb on - strand, within CA264_17010at 3957.943 kb on - strand, within CA264_17010at 3958.005 kb on - strand, within CA264_17010at 3958.028 kb on + strand, within CA264_17010at 3958.029 kb on + strand, within CA264_17010at 3958.042 kb on + strand, within CA264_17010at 3958.043 kb on - strand, within CA264_17010at 3958.105 kb on + strand, within CA264_17010at 3958.204 kb on + strand, within CA264_17010at 3958.204 kb on + strand, within CA264_17010at 3958.363 kb on + strand, within CA264_17010at 3958.573 kb on + strand, within CA264_17010at 3959.120 kb on + strand, within CA264_17010at 3959.164 kb on + strand, within CA264_17010at 3959.179 kb on + strand, within CA264_17010at 3959.405 kb on + strand, within CA264_17010at 3959.439 kb on + strand, within CA264_17010at 3959.742 kb on + strandat 3959.743 kb on - strandat 3959.856 kb on + strandat 3959.879 kb on - strandat 3959.990 kb on + strandat 3960.022 kb on + strandat 3960.044 kb on + strandat 3960.061 kb on + strandat 3960.067 kb on + strandat 3960.067 kb on + strandat 3960.067 kb on + strandat 3960.067 kb on + strandat 3960.067 kb on + strandat 3960.067 kb on + strandat 3960.067 kb on + strandat 3960.067 kb on + strandat 3960.068 kb on - strandat 3960.068 kb on - strandat 3960.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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3,956,202 - +0.2
3,956,205 - +0.4
3,956,207 - -0.4
3,956,215 - -0.7
3,956,241 - +0.9
3,956,243 + -0.7
3,956,266 + -0.3
3,956,347 - CA264_17005 0.19 -1.2
3,956,368 + CA264_17005 0.23 -0.1
3,956,372 + CA264_17005 0.24 -0.2
3,956,372 + CA264_17005 0.24 +1.4
3,956,372 + CA264_17005 0.24 -0.4
3,956,373 - CA264_17005 0.24 -0.1
3,956,375 + CA264_17005 0.25 -2.0
3,956,375 + CA264_17005 0.25 +1.5
3,956,375 + CA264_17005 0.25 -1.7
3,956,375 + CA264_17005 0.25 -0.5
3,956,469 + CA264_17005 0.46 -0.0
3,956,476 + CA264_17005 0.48 -0.3
3,956,493 + CA264_17005 0.52 -0.7
3,956,628 - CA264_17005 0.82 -0.5
3,956,683 + -0.1
3,956,710 + -1.1
3,956,711 - -0.1
3,956,711 - -1.2
3,956,712 + -0.7
3,956,713 - -0.2
3,956,748 + -0.5
3,956,753 + -1.2
3,956,756 - +2.8
3,956,805 + -0.1
3,956,983 + -1.6
3,957,117 + +0.5
3,957,118 - -2.0
3,957,129 + -0.3
3,957,130 - -1.2
3,957,155 - -2.8
3,957,162 + -1.3
3,957,242 + -0.4
3,957,242 + -0.2
3,957,942 + CA264_17010 0.32 -0.4
3,957,942 + CA264_17010 0.32 +0.4
3,957,943 - CA264_17010 0.32 -3.8
3,957,943 - CA264_17010 0.32 -1.8
3,958,005 - CA264_17010 0.34 -2.3
3,958,028 + CA264_17010 0.35 -1.5
3,958,029 + CA264_17010 0.35 -2.6
3,958,042 + CA264_17010 0.35 -0.3
3,958,043 - CA264_17010 0.35 -3.2
3,958,105 + CA264_17010 0.37 -3.3
3,958,204 + CA264_17010 0.41 -2.3
3,958,204 + CA264_17010 0.41 -2.0
3,958,363 + CA264_17010 0.46 -1.2
3,958,573 + CA264_17010 0.53 -1.5
3,959,120 + CA264_17010 0.72 -2.1
3,959,164 + CA264_17010 0.73 -1.8
3,959,179 + CA264_17010 0.74 -3.0
3,959,405 + CA264_17010 0.82 +1.9
3,959,439 + CA264_17010 0.83 -1.4
3,959,742 + -4.0
3,959,743 - -0.7
3,959,856 + -2.7
3,959,879 - -2.8
3,959,990 + -1.2
3,960,022 + -0.5
3,960,044 + -0.6
3,960,061 + -0.3
3,960,067 + +0.2
3,960,067 + -0.2
3,960,067 + -0.9
3,960,067 + -1.7
3,960,067 + -0.8
3,960,067 + -0.2
3,960,067 + -2.8
3,960,067 + -1.3
3,960,068 - -1.4
3,960,068 - -1.2
3,960,126 - -0.6

Or see this region's nucleotide sequence