Experiment: m.b. Chloride 750 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16960 and CA264_16965 are separated by 90 nucleotides CA264_16965 and CA264_16970 are separated by 154 nucleotides
CA264_16960: CA264_16960 - T9SS C-terminal target domain-containing protein, at 3,947,469 to 3,948,971
_16960
CA264_16965: CA264_16965 - hypothetical protein, at 3,949,062 to 3,949,481
_16965
CA264_16970: CA264_16970 - hypothetical protein, at 3,949,636 to 3,951,009
_16970
Position (kb)
3949
3950 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3948.109 kb on - strand, within CA264_16960 at 3948.153 kb on + strand, within CA264_16960 at 3948.153 kb on + strand, within CA264_16960 at 3948.154 kb on - strand, within CA264_16960 at 3948.154 kb on - strand, within CA264_16960 at 3948.279 kb on + strand, within CA264_16960 at 3948.280 kb on - strand, within CA264_16960 at 3948.408 kb on + strand, within CA264_16960 at 3948.473 kb on + strand, within CA264_16960 at 3948.474 kb on - strand, within CA264_16960 at 3948.521 kb on - strand, within CA264_16960 at 3948.535 kb on + strand, within CA264_16960 at 3948.601 kb on + strand, within CA264_16960 at 3948.640 kb on - strand, within CA264_16960 at 3948.657 kb on + strand, within CA264_16960 at 3948.657 kb on + strand, within CA264_16960 at 3948.657 kb on + strand, within CA264_16960 at 3948.658 kb on - strand, within CA264_16960 at 3948.658 kb on - strand, within CA264_16960 at 3948.664 kb on + strand, within CA264_16960 at 3948.665 kb on - strand, within CA264_16960 at 3948.676 kb on + strand, within CA264_16960 at 3948.677 kb on - strand, within CA264_16960 at 3948.691 kb on + strand, within CA264_16960 at 3948.696 kb on - strand, within CA264_16960 at 3948.722 kb on - strand, within CA264_16960 at 3948.722 kb on - strand, within CA264_16960 at 3948.722 kb on - strand, within CA264_16960 at 3948.722 kb on - strand, within CA264_16960 at 3948.733 kb on + strand, within CA264_16960 at 3948.771 kb on + strand, within CA264_16960 at 3948.771 kb on + strand, within CA264_16960 at 3948.772 kb on - strand, within CA264_16960 at 3948.772 kb on - strand, within CA264_16960 at 3948.777 kb on - strand, within CA264_16960 at 3948.886 kb on + strand at 3948.886 kb on + strand at 3948.909 kb on + strand at 3948.910 kb on - strand at 3948.990 kb on - strand at 3948.994 kb on - strand at 3948.994 kb on - strand at 3949.008 kb on + strand at 3949.012 kb on + strand at 3949.013 kb on - strand at 3949.014 kb on + strand at 3949.015 kb on - strand at 3949.127 kb on - strand, within CA264_16965 at 3949.170 kb on - strand, within CA264_16965 at 3949.173 kb on + strand, within CA264_16965 at 3949.173 kb on + strand, within CA264_16965 at 3949.173 kb on + strand, within CA264_16965 at 3949.237 kb on - strand, within CA264_16965 at 3949.249 kb on + strand, within CA264_16965 at 3949.330 kb on - strand, within CA264_16965 at 3949.349 kb on + strand, within CA264_16965 at 3949.349 kb on + strand, within CA264_16965 at 3949.350 kb on - strand, within CA264_16965 at 3949.350 kb on - strand, within CA264_16965 at 3949.383 kb on + strand, within CA264_16965 at 3949.383 kb on + strand, within CA264_16965 at 3949.462 kb on - strand at 3949.481 kb on + strand at 3949.482 kb on - strand at 3949.487 kb on + strand at 3949.487 kb on + strand at 3949.488 kb on - strand at 3949.541 kb on + strand at 3949.542 kb on - strand at 3949.543 kb on + strand at 3949.544 kb on - strand at 3949.544 kb on - strand at 3949.544 kb on - strand at 3949.544 kb on - strand at 3949.547 kb on + strand at 3949.547 kb on + strand at 3949.547 kb on + strand at 3949.548 kb on - strand at 3949.548 kb on - strand at 3949.549 kb on + strand at 3949.549 kb on + strand at 3949.550 kb on - strand at 3949.583 kb on + strand at 3949.595 kb on - strand at 3949.611 kb on + strand at 3949.612 kb on - strand at 3949.612 kb on - strand at 3949.615 kb on + strand at 3949.616 kb on - strand at 3949.643 kb on - strand at 3949.643 kb on - strand at 3949.643 kb on - strand at 3949.647 kb on + strand at 3949.656 kb on - strand at 3949.759 kb on + strand at 3949.760 kb on - strand at 3949.773 kb on - strand at 3950.045 kb on + strand, within CA264_16970 at 3950.063 kb on + strand, within CA264_16970 at 3950.063 kb on + strand, within CA264_16970 at 3950.064 kb on - strand, within CA264_16970 at 3950.076 kb on - strand, within CA264_16970 at 3950.120 kb on + strand, within CA264_16970 at 3950.120 kb on + strand, within CA264_16970 at 3950.121 kb on - strand, within CA264_16970 at 3950.121 kb on - strand, within CA264_16970 at 3950.130 kb on + strand, within CA264_16970 at 3950.155 kb on - strand, within CA264_16970 at 3950.155 kb on - strand, within CA264_16970 at 3950.174 kb on - strand, within CA264_16970 at 3950.204 kb on - strand, within CA264_16970 at 3950.262 kb on + strand, within CA264_16970 at 3950.277 kb on + strand, within CA264_16970 at 3950.278 kb on - strand, within CA264_16970 at 3950.334 kb on + strand, within CA264_16970 at 3950.335 kb on - strand, within CA264_16970 at 3950.466 kb on + strand, within CA264_16970 at 3950.470 kb on + strand, within CA264_16970
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM remove 3,948,109 - CA264_16960 0.43 -0.1 3,948,153 + CA264_16960 0.46 +1.5 3,948,153 + CA264_16960 0.46 -0.2 3,948,154 - CA264_16960 0.46 +2.5 3,948,154 - CA264_16960 0.46 -0.0 3,948,279 + CA264_16960 0.54 -1.7 3,948,280 - CA264_16960 0.54 -1.3 3,948,408 + CA264_16960 0.62 -0.9 3,948,473 + CA264_16960 0.67 +0.0 3,948,474 - CA264_16960 0.67 +1.2 3,948,521 - CA264_16960 0.70 -1.0 3,948,535 + CA264_16960 0.71 -0.7 3,948,601 + CA264_16960 0.75 -0.4 3,948,640 - CA264_16960 0.78 -0.6 3,948,657 + CA264_16960 0.79 +0.6 3,948,657 + CA264_16960 0.79 -1.0 3,948,657 + CA264_16960 0.79 -0.3 3,948,658 - CA264_16960 0.79 +0.6 3,948,658 - CA264_16960 0.79 -0.5 3,948,664 + CA264_16960 0.80 -0.1 3,948,665 - CA264_16960 0.80 -0.5 3,948,676 + CA264_16960 0.80 -0.9 3,948,677 - CA264_16960 0.80 -0.6 3,948,691 + CA264_16960 0.81 -0.1 3,948,696 - CA264_16960 0.82 -0.8 3,948,722 - CA264_16960 0.83 +0.1 3,948,722 - CA264_16960 0.83 -1.0 3,948,722 - CA264_16960 0.83 -0.7 3,948,722 - CA264_16960 0.83 +0.3 3,948,733 + CA264_16960 0.84 -0.2 3,948,771 + CA264_16960 0.87 -0.1 3,948,771 + CA264_16960 0.87 -0.2 3,948,772 - CA264_16960 0.87 -0.9 3,948,772 - CA264_16960 0.87 -1.2 3,948,777 - CA264_16960 0.87 +0.8 3,948,886 + +0.2 3,948,886 + -0.7 3,948,909 + -1.4 3,948,910 - -0.9 3,948,990 - -0.4 3,948,994 - +0.3 3,948,994 - -1.4 3,949,008 + +0.9 3,949,012 + -1.0 3,949,013 - +0.3 3,949,014 + +0.0 3,949,015 - -0.5 3,949,127 - CA264_16965 0.15 -0.2 3,949,170 - CA264_16965 0.26 +0.8 3,949,173 + CA264_16965 0.26 +0.9 3,949,173 + CA264_16965 0.26 +0.6 3,949,173 + CA264_16965 0.26 +0.1 3,949,237 - CA264_16965 0.42 -0.5 3,949,249 + CA264_16965 0.45 +0.9 3,949,330 - CA264_16965 0.64 -0.1 3,949,349 + CA264_16965 0.68 +0.2 3,949,349 + CA264_16965 0.68 -0.2 3,949,350 - CA264_16965 0.69 -0.5 3,949,350 - CA264_16965 0.69 +0.2 3,949,383 + CA264_16965 0.76 +0.0 3,949,383 + CA264_16965 0.76 +0.8 3,949,462 - -0.2 3,949,481 + -0.1 3,949,482 - -0.5 3,949,487 + -0.7 3,949,487 + +0.1 3,949,488 - +0.9 3,949,541 + -0.1 3,949,542 - +0.1 3,949,543 + -0.1 3,949,544 - -0.1 3,949,544 - +1.0 3,949,544 - -0.1 3,949,544 - -0.5 3,949,547 + +1.6 3,949,547 + -0.5 3,949,547 + -1.9 3,949,548 - -0.1 3,949,548 - +0.2 3,949,549 + -0.1 3,949,549 + -0.7 3,949,550 - -0.1 3,949,583 + +0.7 3,949,595 - +0.8 3,949,611 + -1.2 3,949,612 - +0.8 3,949,612 - -0.0 3,949,615 + -0.2 3,949,616 - -0.8 3,949,643 - -0.9 3,949,643 - +0.6 3,949,643 - +0.2 3,949,647 + -0.2 3,949,656 - +0.5 3,949,759 + -0.4 3,949,760 - -0.3 3,949,773 - +0.1 3,950,045 + CA264_16970 0.30 -1.9 3,950,063 + CA264_16970 0.31 +0.6 3,950,063 + CA264_16970 0.31 -0.2 3,950,064 - CA264_16970 0.31 -1.5 3,950,076 - CA264_16970 0.32 -1.2 3,950,120 + CA264_16970 0.35 +0.0 3,950,120 + CA264_16970 0.35 -0.3 3,950,121 - CA264_16970 0.35 -0.8 3,950,121 - CA264_16970 0.35 +0.5 3,950,130 + CA264_16970 0.36 +0.0 3,950,155 - CA264_16970 0.38 -0.2 3,950,155 - CA264_16970 0.38 +0.0 3,950,174 - CA264_16970 0.39 +1.7 3,950,204 - CA264_16970 0.41 -1.6 3,950,262 + CA264_16970 0.46 -0.8 3,950,277 + CA264_16970 0.47 -0.3 3,950,278 - CA264_16970 0.47 -0.1 3,950,334 + CA264_16970 0.51 -0.5 3,950,335 - CA264_16970 0.51 +0.4 3,950,466 + CA264_16970 0.60 -0.1 3,950,470 + CA264_16970 0.61 -1.1
Or see this region's nucleotide sequence