Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15430

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15420 and CA264_15425 are separated by 41 nucleotidesCA264_15425 and CA264_15430 are separated by 438 nucleotidesCA264_15430 and CA264_15435 are separated by 254 nucleotides CA264_15420: CA264_15420 - hypothetical protein, at 3,611,694 to 3,614,132 _15420 CA264_15425: CA264_15425 - DUF4834 domain-containing protein, at 3,614,174 to 3,614,452 _15425 CA264_15430: CA264_15430 - carbamoyl phosphate synthase large subunit, at 3,614,891 to 3,617,704 _15430 CA264_15435: CA264_15435 - hypothetical protein, at 3,617,959 to 3,618,948 _15435 Position (kb) 3614 3615 3616 3617 3618Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3614.132 kb on + strandat 3614.132 kb on + strandat 3614.132 kb on + strandat 3614.166 kb on + strandat 3614.181 kb on - strandat 3614.200 kb on - strandat 3614.328 kb on + strand, within CA264_15425at 3614.384 kb on + strand, within CA264_15425at 3614.404 kb on + strand, within CA264_15425at 3614.435 kb on - strandat 3614.438 kb on + strandat 3614.480 kb on + strandat 3614.484 kb on + strandat 3614.484 kb on + strandat 3614.484 kb on + strandat 3614.486 kb on + strandat 3614.487 kb on - strandat 3614.515 kb on - strandat 3614.570 kb on + strandat 3614.577 kb on + strandat 3614.577 kb on + strandat 3614.652 kb on - strandat 3614.664 kb on + strandat 3614.669 kb on + strandat 3614.670 kb on - strandat 3614.670 kb on - strandat 3614.683 kb on + strandat 3614.683 kb on + strandat 3614.683 kb on + strandat 3614.683 kb on + strandat 3614.684 kb on - strandat 3614.684 kb on - strandat 3614.685 kb on + strandat 3614.692 kb on + strandat 3614.837 kb on + strandat 3614.838 kb on - strandat 3614.878 kb on - strandat 3614.883 kb on + strandat 3614.885 kb on + strandat 3614.886 kb on - strandat 3614.886 kb on - strandat 3614.886 kb on - strandat 3614.892 kb on + strandat 3614.893 kb on - strandat 3614.938 kb on - strandat 3614.959 kb on + strandat 3615.031 kb on - strandat 3615.067 kb on + strandat 3615.067 kb on + strandat 3615.067 kb on + strandat 3615.067 kb on + strandat 3615.068 kb on - strandat 3615.082 kb on + strandat 3615.082 kb on + strandat 3615.083 kb on - strandat 3615.127 kb on - strandat 3615.135 kb on + strandat 3615.136 kb on - strandat 3615.148 kb on - strandat 3615.172 kb on + strandat 3615.173 kb on - strand, within CA264_15430at 3615.205 kb on - strand, within CA264_15430at 3615.339 kb on + strand, within CA264_15430at 3615.397 kb on - strand, within CA264_15430at 3615.739 kb on + strand, within CA264_15430at 3615.841 kb on + strand, within CA264_15430at 3615.841 kb on + strand, within CA264_15430at 3615.842 kb on - strand, within CA264_15430at 3615.936 kb on + strand, within CA264_15430at 3616.043 kb on - strand, within CA264_15430at 3616.049 kb on + strand, within CA264_15430at 3616.084 kb on - strand, within CA264_15430at 3616.084 kb on - strand, within CA264_15430at 3616.086 kb on + strand, within CA264_15430at 3616.089 kb on + strand, within CA264_15430at 3616.089 kb on + strand, within CA264_15430at 3616.089 kb on + strand, within CA264_15430at 3616.147 kb on + strand, within CA264_15430at 3616.233 kb on - strand, within CA264_15430at 3616.278 kb on + strand, within CA264_15430at 3616.279 kb on - strand, within CA264_15430at 3616.647 kb on + strand, within CA264_15430at 3616.648 kb on - strand, within CA264_15430at 3616.717 kb on - strand, within CA264_15430at 3616.717 kb on - strand, within CA264_15430at 3616.858 kb on + strand, within CA264_15430at 3616.858 kb on + strand, within CA264_15430at 3617.093 kb on + strand, within CA264_15430at 3617.205 kb on - strand, within CA264_15430at 3617.461 kb on + strandat 3617.462 kb on - strandat 3617.462 kb on - strandat 3617.488 kb on - strandat 3617.582 kb on - strandat 3617.653 kb on + strandat 3617.668 kb on + strandat 3617.668 kb on + strandat 3617.671 kb on + strandat 3617.672 kb on - strandat 3617.713 kb on + strandat 3617.782 kb on - strandat 3617.782 kb on - strandat 3617.786 kb on - strandat 3618.025 kb on + strandat 3618.045 kb on + strandat 3618.046 kb on - strandat 3618.046 kb on - strandat 3618.069 kb on + strand, within CA264_15435at 3618.073 kb on + strand, within CA264_15435at 3618.073 kb on + strand, within CA264_15435at 3618.073 kb on + strand, within CA264_15435at 3618.073 kb on + strand, within CA264_15435at 3618.074 kb on - strand, within CA264_15435at 3618.074 kb on - strand, within CA264_15435at 3618.103 kb on + strand, within CA264_15435at 3618.161 kb on + strand, within CA264_15435at 3618.162 kb on - strand, within CA264_15435at 3618.162 kb on - strand, within CA264_15435at 3618.203 kb on + strand, within CA264_15435at 3618.254 kb on + strand, within CA264_15435at 3618.291 kb on + strand, within CA264_15435at 3618.291 kb on + strand, within CA264_15435at 3618.295 kb on + strand, within CA264_15435at 3618.375 kb on - strand, within CA264_15435at 3618.380 kb on - strand, within CA264_15435at 3618.475 kb on - strand, within CA264_15435at 3618.501 kb on - strand, within CA264_15435at 3618.508 kb on - strand, within CA264_15435at 3618.586 kb on - strand, within CA264_15435at 3618.586 kb on - strand, within CA264_15435at 3618.610 kb on - strand, within CA264_15435at 3618.686 kb on + strand, within CA264_15435at 3618.686 kb on + strand, within CA264_15435

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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3,614,132 + +2.6
3,614,132 + -0.1
3,614,132 + -0.8
3,614,166 + -0.4
3,614,181 - +0.5
3,614,200 - -0.9
3,614,328 + CA264_15425 0.55 -0.6
3,614,384 + CA264_15425 0.75 +1.4
3,614,404 + CA264_15425 0.82 +0.1
3,614,435 - -0.4
3,614,438 + -0.3
3,614,480 + -1.1
3,614,484 + +0.7
3,614,484 + -2.9
3,614,484 + -0.8
3,614,486 + +0.5
3,614,487 - -1.4
3,614,515 - -3.2
3,614,570 + +0.1
3,614,577 + -1.1
3,614,577 + -0.6
3,614,652 - -1.9
3,614,664 + -0.8
3,614,669 + -0.6
3,614,670 - -1.3
3,614,670 - -2.3
3,614,683 + +0.2
3,614,683 + +0.4
3,614,683 + -0.7
3,614,683 + -0.7
3,614,684 - -4.6
3,614,684 - -1.2
3,614,685 + -1.0
3,614,692 + -1.0
3,614,837 + +0.3
3,614,838 - -1.4
3,614,878 - -0.4
3,614,883 + -0.2
3,614,885 + +0.5
3,614,886 - +0.4
3,614,886 - -0.0
3,614,886 - +0.4
3,614,892 + -0.7
3,614,893 - +0.3
3,614,938 - -1.7
3,614,959 + +0.6
3,615,031 - -0.2
3,615,067 + -0.4
3,615,067 + +0.1
3,615,067 + -0.5
3,615,067 + -0.5
3,615,068 - -0.6
3,615,082 + -0.1
3,615,082 + +0.2
3,615,083 - -0.2
3,615,127 - +0.2
3,615,135 + -0.0
3,615,136 - -0.8
3,615,148 - -0.9
3,615,172 + +1.3
3,615,173 - CA264_15430 0.10 -0.6
3,615,205 - CA264_15430 0.11 -1.1
3,615,339 + CA264_15430 0.16 +0.1
3,615,397 - CA264_15430 0.18 -0.2
3,615,739 + CA264_15430 0.30 +0.2
3,615,841 + CA264_15430 0.34 -0.3
3,615,841 + CA264_15430 0.34 +0.0
3,615,842 - CA264_15430 0.34 +0.6
3,615,936 + CA264_15430 0.37 -0.4
3,616,043 - CA264_15430 0.41 -2.2
3,616,049 + CA264_15430 0.41 -1.4
3,616,084 - CA264_15430 0.42 -0.1
3,616,084 - CA264_15430 0.42 -1.3
3,616,086 + CA264_15430 0.42 +0.2
3,616,089 + CA264_15430 0.43 -1.6
3,616,089 + CA264_15430 0.43 -0.3
3,616,089 + CA264_15430 0.43 +0.3
3,616,147 + CA264_15430 0.45 -0.8
3,616,233 - CA264_15430 0.48 +0.8
3,616,278 + CA264_15430 0.49 +2.4
3,616,279 - CA264_15430 0.49 -0.3
3,616,647 + CA264_15430 0.62 -0.5
3,616,648 - CA264_15430 0.62 -0.8
3,616,717 - CA264_15430 0.65 -0.4
3,616,717 - CA264_15430 0.65 -0.9
3,616,858 + CA264_15430 0.70 -2.2
3,616,858 + CA264_15430 0.70 -0.2
3,617,093 + CA264_15430 0.78 -0.4
3,617,205 - CA264_15430 0.82 -0.3
3,617,461 + -1.1
3,617,462 - -0.9
3,617,462 - -0.9
3,617,488 - +1.1
3,617,582 - -0.1
3,617,653 + -0.5
3,617,668 + -0.7
3,617,668 + -0.5
3,617,671 + -0.2
3,617,672 - -0.6
3,617,713 + -0.6
3,617,782 - +0.3
3,617,782 - -1.0
3,617,786 - -0.0
3,618,025 + -0.3
3,618,045 + +0.6
3,618,046 - -0.5
3,618,046 - -0.0
3,618,069 + CA264_15435 0.11 +0.2
3,618,073 + CA264_15435 0.12 -0.0
3,618,073 + CA264_15435 0.12 +0.4
3,618,073 + CA264_15435 0.12 -1.9
3,618,073 + CA264_15435 0.12 +1.1
3,618,074 - CA264_15435 0.12 -0.4
3,618,074 - CA264_15435 0.12 -0.1
3,618,103 + CA264_15435 0.15 +0.0
3,618,161 + CA264_15435 0.20 -0.2
3,618,162 - CA264_15435 0.21 -0.4
3,618,162 - CA264_15435 0.21 +0.0
3,618,203 + CA264_15435 0.25 -0.3
3,618,254 + CA264_15435 0.30 +0.3
3,618,291 + CA264_15435 0.34 -1.1
3,618,291 + CA264_15435 0.34 +0.2
3,618,295 + CA264_15435 0.34 -0.6
3,618,375 - CA264_15435 0.42 -0.2
3,618,380 - CA264_15435 0.43 +0.1
3,618,475 - CA264_15435 0.52 +0.3
3,618,501 - CA264_15435 0.55 -0.1
3,618,508 - CA264_15435 0.55 -0.9
3,618,586 - CA264_15435 0.63 +0.0
3,618,586 - CA264_15435 0.63 +0.4
3,618,610 - CA264_15435 0.66 +0.2
3,618,686 + CA264_15435 0.73 +0.8
3,618,686 + CA264_15435 0.73 +0.1

Or see this region's nucleotide sequence