Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13105

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13100 and CA264_13105 overlap by 4 nucleotidesCA264_13105 and CA264_13110 are separated by 134 nucleotides CA264_13100: CA264_13100 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,055,564 to 3,056,796 _13100 CA264_13105: CA264_13105 - 3-dehydroquinate synthase, at 3,056,793 to 3,057,830 _13105 CA264_13110: CA264_13110 - 3-deoxy-7-phosphoheptulonate synthase, at 3,057,965 to 3,059,062 _13110 Position (kb) 3056 3057 3058Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3056.796 kb on + strandat 3056.796 kb on + strandat 3056.797 kb on - strandat 3056.797 kb on - strandat 3056.799 kb on + strandat 3056.799 kb on + strandat 3056.799 kb on + strandat 3056.800 kb on - strandat 3056.806 kb on + strandat 3056.806 kb on + strandat 3056.806 kb on + strandat 3056.807 kb on - strandat 3056.810 kb on - strandat 3056.810 kb on - strandat 3057.422 kb on + strand, within CA264_13105at 3057.812 kb on + strandat 3057.816 kb on + strandat 3057.816 kb on + strandat 3057.816 kb on + strandat 3057.817 kb on - strandat 3057.865 kb on - strandat 3057.967 kb on - strandat 3057.967 kb on - strandat 3058.139 kb on - strand, within CA264_13110at 3058.190 kb on - strand, within CA264_13110at 3058.261 kb on - strand, within CA264_13110at 3058.261 kb on - strand, within CA264_13110at 3058.270 kb on + strand, within CA264_13110at 3058.289 kb on + strand, within CA264_13110at 3058.290 kb on - strand, within CA264_13110at 3058.525 kb on - strand, within CA264_13110at 3058.540 kb on - strand, within CA264_13110at 3058.559 kb on + strand, within CA264_13110at 3058.709 kb on + strand, within CA264_13110

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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3,056,796 + -1.0
3,056,796 + -0.9
3,056,797 - -1.3
3,056,797 - +1.5
3,056,799 + -1.9
3,056,799 + -1.4
3,056,799 + -2.7
3,056,800 - +1.3
3,056,806 + -0.5
3,056,806 + -1.0
3,056,806 + +0.6
3,056,807 - -0.4
3,056,810 - -0.5
3,056,810 - -1.7
3,057,422 + CA264_13105 0.61 -1.0
3,057,812 + -0.6
3,057,816 + +0.3
3,057,816 + -0.1
3,057,816 + -0.0
3,057,817 - +0.2
3,057,865 - -0.1
3,057,967 - +0.8
3,057,967 - +0.6
3,058,139 - CA264_13110 0.16 -0.2
3,058,190 - CA264_13110 0.20 +0.4
3,058,261 - CA264_13110 0.27 +3.0
3,058,261 - CA264_13110 0.27 -0.7
3,058,270 + CA264_13110 0.28 +0.7
3,058,289 + CA264_13110 0.30 -0.2
3,058,290 - CA264_13110 0.30 -0.3
3,058,525 - CA264_13110 0.51 -0.8
3,058,540 - CA264_13110 0.52 +0.5
3,058,559 + CA264_13110 0.54 -0.7
3,058,709 + CA264_13110 0.68 -1.0

Or see this region's nucleotide sequence