Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11200

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11195 and CA264_11200 are separated by 133 nucleotidesCA264_11200 and CA264_11205 are separated by 358 nucleotides CA264_11195: CA264_11195 - phosphatase, at 2,593,045 to 2,593,944 _11195 CA264_11200: CA264_11200 - RNA degradosome polyphosphate kinase, at 2,594,078 to 2,596,177 _11200 CA264_11205: CA264_11205 - hypothetical protein, at 2,596,536 to 2,597,477 _11205 Position (kb) 2594 2595 2596 2597Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2593.103 kb on + strandat 2593.144 kb on + strand, within CA264_11195at 2593.144 kb on + strand, within CA264_11195at 2593.145 kb on - strand, within CA264_11195at 2593.194 kb on + strand, within CA264_11195at 2593.223 kb on + strand, within CA264_11195at 2593.223 kb on + strand, within CA264_11195at 2593.224 kb on - strand, within CA264_11195at 2593.224 kb on - strand, within CA264_11195at 2593.233 kb on - strand, within CA264_11195at 2593.276 kb on + strand, within CA264_11195at 2593.277 kb on - strand, within CA264_11195at 2593.468 kb on - strand, within CA264_11195at 2593.609 kb on + strand, within CA264_11195at 2593.723 kb on + strand, within CA264_11195at 2593.723 kb on + strand, within CA264_11195at 2593.724 kb on - strand, within CA264_11195at 2593.724 kb on - strand, within CA264_11195at 2593.759 kb on - strand, within CA264_11195at 2593.814 kb on - strand, within CA264_11195at 2593.848 kb on + strand, within CA264_11195at 2593.848 kb on + strand, within CA264_11195at 2593.979 kb on + strandat 2593.989 kb on - strandat 2593.990 kb on + strandat 2593.991 kb on - strandat 2594.013 kb on + strandat 2594.013 kb on + strandat 2594.023 kb on + strandat 2594.124 kb on - strandat 2594.199 kb on + strandat 2594.226 kb on + strandat 2594.227 kb on - strandat 2594.364 kb on + strand, within CA264_11200at 2594.735 kb on + strand, within CA264_11200at 2594.741 kb on + strand, within CA264_11200at 2594.795 kb on + strand, within CA264_11200at 2594.796 kb on - strand, within CA264_11200at 2595.092 kb on + strand, within CA264_11200at 2595.114 kb on + strand, within CA264_11200at 2595.718 kb on - strand, within CA264_11200at 2595.722 kb on - strand, within CA264_11200at 2595.816 kb on - strand, within CA264_11200at 2595.818 kb on + strand, within CA264_11200at 2595.975 kb on + strandat 2596.134 kb on + strandat 2596.139 kb on - strandat 2596.205 kb on + strandat 2596.265 kb on + strandat 2596.280 kb on + strandat 2596.451 kb on + strandat 2596.492 kb on + strandat 2596.569 kb on + strandat 2596.694 kb on + strand, within CA264_11205at 2596.695 kb on - strand, within CA264_11205at 2596.702 kb on - strand, within CA264_11205at 2596.706 kb on + strand, within CA264_11205at 2596.750 kb on - strand, within CA264_11205at 2596.751 kb on + strand, within CA264_11205at 2596.778 kb on - strand, within CA264_11205at 2596.823 kb on + strand, within CA264_11205at 2596.924 kb on - strand, within CA264_11205at 2596.928 kb on + strand, within CA264_11205at 2596.929 kb on - strand, within CA264_11205at 2596.932 kb on - strand, within CA264_11205at 2596.970 kb on + strand, within CA264_11205at 2596.974 kb on + strand, within CA264_11205at 2596.974 kb on + strand, within CA264_11205at 2596.974 kb on + strand, within CA264_11205at 2596.975 kb on - strand, within CA264_11205at 2597.173 kb on - strand, within CA264_11205

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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2,593,103 + -0.7
2,593,144 + CA264_11195 0.11 -0.7
2,593,144 + CA264_11195 0.11 -0.9
2,593,145 - CA264_11195 0.11 -1.2
2,593,194 + CA264_11195 0.17 +0.2
2,593,223 + CA264_11195 0.20 -0.0
2,593,223 + CA264_11195 0.20 +0.4
2,593,224 - CA264_11195 0.20 +0.6
2,593,224 - CA264_11195 0.20 -1.0
2,593,233 - CA264_11195 0.21 +0.4
2,593,276 + CA264_11195 0.26 -0.2
2,593,277 - CA264_11195 0.26 -0.0
2,593,468 - CA264_11195 0.47 -0.0
2,593,609 + CA264_11195 0.63 +0.8
2,593,723 + CA264_11195 0.75 -0.4
2,593,723 + CA264_11195 0.75 -0.3
2,593,724 - CA264_11195 0.75 -1.0
2,593,724 - CA264_11195 0.75 +0.4
2,593,759 - CA264_11195 0.79 -0.3
2,593,814 - CA264_11195 0.85 -1.0
2,593,848 + CA264_11195 0.89 +0.6
2,593,848 + CA264_11195 0.89 +0.3
2,593,979 + +0.2
2,593,989 - -0.4
2,593,990 + +0.2
2,593,991 - -1.3
2,594,013 + +0.6
2,594,013 + +0.5
2,594,023 + -0.2
2,594,124 - +0.2
2,594,199 + +2.9
2,594,226 + +2.4
2,594,227 - -0.6
2,594,364 + CA264_11200 0.14 +2.1
2,594,735 + CA264_11200 0.31 +2.1
2,594,741 + CA264_11200 0.32 +2.9
2,594,795 + CA264_11200 0.34 +1.9
2,594,796 - CA264_11200 0.34 +1.9
2,595,092 + CA264_11200 0.48 +2.0
2,595,114 + CA264_11200 0.49 +1.8
2,595,718 - CA264_11200 0.78 +2.1
2,595,722 - CA264_11200 0.78 +2.4
2,595,816 - CA264_11200 0.83 +2.1
2,595,818 + CA264_11200 0.83 +1.6
2,595,975 + +2.3
2,596,134 + +1.6
2,596,139 - +1.4
2,596,205 + -2.3
2,596,265 + -0.8
2,596,280 + -0.1
2,596,451 + -1.3
2,596,492 + -0.1
2,596,569 + -0.5
2,596,694 + CA264_11205 0.17 +0.5
2,596,695 - CA264_11205 0.17 -1.6
2,596,702 - CA264_11205 0.18 -2.1
2,596,706 + CA264_11205 0.18 +1.2
2,596,750 - CA264_11205 0.23 -1.2
2,596,751 + CA264_11205 0.23 -0.7
2,596,778 - CA264_11205 0.26 -0.4
2,596,823 + CA264_11205 0.30 +0.1
2,596,924 - CA264_11205 0.41 -1.6
2,596,928 + CA264_11205 0.42 -1.1
2,596,929 - CA264_11205 0.42 -1.4
2,596,932 - CA264_11205 0.42 -1.7
2,596,970 + CA264_11205 0.46 -0.7
2,596,974 + CA264_11205 0.46 +0.3
2,596,974 + CA264_11205 0.46 -0.1
2,596,974 + CA264_11205 0.46 -0.3
2,596,975 - CA264_11205 0.47 -1.6
2,597,173 - CA264_11205 0.68 -1.1

Or see this region's nucleotide sequence