Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09370

Experiment: m.b. Chloride 750 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_09365 and CA264_09370 are separated by 163 nucleotidesCA264_09370 and CA264_09375 are separated by 90 nucleotidesCA264_09375 and CA264_09380 are separated by 7 nucleotidesCA264_09380 and CA264_09385 are separated by 208 nucleotides CA264_09365: CA264_09365 - 4-hydroxybutyrate CoA-transferase, at 2,189,004 to 2,190,293 _09365 CA264_09370: CA264_09370 - amidase, at 2,190,457 to 2,192,037 _09370 CA264_09375: CA264_09375 - transcriptional regulator, at 2,192,128 to 2,192,328 _09375 CA264_09380: CA264_09380 - hypothetical protein, at 2,192,336 to 2,192,737 _09380 CA264_09385: CA264_09385 - zinc-dependent metalloprotease, at 2,192,946 to 2,195,435 _09385 Position (kb) 2190 2191 2192 2193Strain fitness (log2 ratio) -2 -1 0 1at 2189.598 kb on + strand, within CA264_09365at 2189.599 kb on - strand, within CA264_09365at 2189.600 kb on + strand, within CA264_09365at 2189.687 kb on + strand, within CA264_09365at 2189.699 kb on + strand, within CA264_09365at 2189.768 kb on + strand, within CA264_09365at 2189.769 kb on - strand, within CA264_09365at 2189.769 kb on - strand, within CA264_09365at 2189.773 kb on - strand, within CA264_09365at 2189.773 kb on - strand, within CA264_09365at 2189.874 kb on + strand, within CA264_09365at 2189.875 kb on - strand, within CA264_09365at 2189.914 kb on + strand, within CA264_09365at 2189.998 kb on + strand, within CA264_09365at 2190.054 kb on - strand, within CA264_09365at 2190.057 kb on - strand, within CA264_09365at 2190.153 kb on + strand, within CA264_09365at 2190.168 kb on + strandat 2190.175 kb on + strandat 2190.175 kb on + strandat 2190.176 kb on - strandat 2190.181 kb on - strandat 2190.181 kb on - strandat 2190.270 kb on + strandat 2190.291 kb on + strandat 2190.292 kb on - strandat 2190.292 kb on - strandat 2190.292 kb on - strandat 2190.343 kb on - strandat 2190.351 kb on + strandat 2190.462 kb on + strandat 2190.463 kb on - strandat 2190.463 kb on - strandat 2190.470 kb on - strandat 2190.472 kb on - strandat 2190.518 kb on - strandat 2190.576 kb on + strandat 2190.791 kb on + strand, within CA264_09370at 2190.802 kb on + strand, within CA264_09370at 2190.803 kb on - strand, within CA264_09370at 2190.803 kb on - strand, within CA264_09370at 2190.963 kb on + strand, within CA264_09370at 2190.964 kb on - strand, within CA264_09370at 2191.023 kb on + strand, within CA264_09370at 2191.078 kb on - strand, within CA264_09370at 2191.312 kb on + strand, within CA264_09370at 2191.313 kb on - strand, within CA264_09370at 2191.458 kb on - strand, within CA264_09370at 2191.472 kb on + strand, within CA264_09370at 2191.675 kb on - strand, within CA264_09370at 2191.743 kb on + strand, within CA264_09370at 2191.755 kb on - strand, within CA264_09370at 2191.852 kb on - strand, within CA264_09370at 2191.878 kb on + strand, within CA264_09370at 2191.888 kb on - strandat 2191.888 kb on - strandat 2191.888 kb on - strandat 2191.888 kb on - strandat 2191.891 kb on + strandat 2191.891 kb on + strandat 2191.891 kb on + strandat 2191.892 kb on - strandat 2191.892 kb on - strandat 2191.892 kb on - strandat 2191.933 kb on + strandat 2191.934 kb on - strandat 2191.950 kb on + strandat 2191.958 kb on - strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.963 kb on + strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2191.964 kb on - strandat 2192.035 kb on + strandat 2192.129 kb on + strandat 2192.168 kb on - strand, within CA264_09375at 2192.168 kb on - strand, within CA264_09375at 2192.308 kb on + strand, within CA264_09375at 2192.315 kb on - strandat 2192.342 kb on + strandat 2192.343 kb on - strandat 2192.415 kb on + strand, within CA264_09380at 2192.415 kb on + strand, within CA264_09380at 2192.444 kb on + strand, within CA264_09380at 2192.451 kb on + strand, within CA264_09380at 2192.464 kb on + strand, within CA264_09380at 2192.465 kb on - strand, within CA264_09380at 2192.532 kb on + strand, within CA264_09380at 2192.557 kb on - strand, within CA264_09380at 2192.634 kb on + strand, within CA264_09380at 2192.709 kb on - strandat 2192.713 kb on - strandat 2192.713 kb on - strandat 2192.716 kb on - strandat 2192.716 kb on - strandat 2192.724 kb on - strandat 2192.834 kb on + strandat 2192.834 kb on + strandat 2192.839 kb on - strandat 2192.865 kb on - strandat 2192.899 kb on + strandat 2192.900 kb on - strandat 2192.900 kb on - strandat 2192.947 kb on + strandat 2192.948 kb on - strandat 2192.948 kb on - strandat 2192.972 kb on + strandat 2192.999 kb on + strandat 2193.000 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
remove
2,189,598 + CA264_09365 0.46 -0.3
2,189,599 - CA264_09365 0.46 +0.0
2,189,600 + CA264_09365 0.46 -0.1
2,189,687 + CA264_09365 0.53 -0.0
2,189,699 + CA264_09365 0.54 -0.7
2,189,768 + CA264_09365 0.59 +1.0
2,189,769 - CA264_09365 0.59 -2.0
2,189,769 - CA264_09365 0.59 -0.0
2,189,773 - CA264_09365 0.60 +0.8
2,189,773 - CA264_09365 0.60 -0.4
2,189,874 + CA264_09365 0.67 +0.1
2,189,875 - CA264_09365 0.68 -0.0
2,189,914 + CA264_09365 0.71 +1.3
2,189,998 + CA264_09365 0.77 -0.5
2,190,054 - CA264_09365 0.81 -1.0
2,190,057 - CA264_09365 0.82 +0.6
2,190,153 + CA264_09365 0.89 -0.2
2,190,168 + -0.4
2,190,175 + -1.1
2,190,175 + -0.6
2,190,176 - +1.0
2,190,181 - -0.3
2,190,181 - +0.1
2,190,270 + -0.0
2,190,291 + -0.3
2,190,292 - +0.5
2,190,292 - -0.3
2,190,292 - -1.3
2,190,343 - -0.7
2,190,351 + +0.4
2,190,462 + -0.8
2,190,463 - -0.5
2,190,463 - -1.3
2,190,470 - -1.2
2,190,472 - -0.7
2,190,518 - +0.7
2,190,576 + +0.5
2,190,791 + CA264_09370 0.21 +0.4
2,190,802 + CA264_09370 0.22 +1.5
2,190,803 - CA264_09370 0.22 -0.2
2,190,803 - CA264_09370 0.22 -1.0
2,190,963 + CA264_09370 0.32 +0.1
2,190,964 - CA264_09370 0.32 -0.3
2,191,023 + CA264_09370 0.36 -0.8
2,191,078 - CA264_09370 0.39 +1.2
2,191,312 + CA264_09370 0.54 -0.4
2,191,313 - CA264_09370 0.54 +0.8
2,191,458 - CA264_09370 0.63 +0.4
2,191,472 + CA264_09370 0.64 +0.2
2,191,675 - CA264_09370 0.77 -0.6
2,191,743 + CA264_09370 0.81 -0.8
2,191,755 - CA264_09370 0.82 -0.5
2,191,852 - CA264_09370 0.88 -0.1
2,191,878 + CA264_09370 0.90 -0.3
2,191,888 - -0.8
2,191,888 - +0.1
2,191,888 - -0.6
2,191,888 - +0.6
2,191,891 + -0.6
2,191,891 + +0.2
2,191,891 + -1.0
2,191,892 - -0.1
2,191,892 - -0.4
2,191,892 - -0.6
2,191,933 + +0.7
2,191,934 - +1.7
2,191,950 + -0.6
2,191,958 - -0.3
2,191,963 + -0.5
2,191,963 + -0.7
2,191,963 + -1.1
2,191,963 + -0.8
2,191,963 + -0.6
2,191,963 + +0.3
2,191,963 + -0.1
2,191,963 + -0.5
2,191,964 - -0.8
2,191,964 - +0.2
2,191,964 - -0.3
2,191,964 - -0.2
2,191,964 - +0.3
2,191,964 - +0.1
2,191,964 - +0.2
2,191,964 - +1.3
2,191,964 - -0.4
2,192,035 + +0.3
2,192,129 + -0.9
2,192,168 - CA264_09375 0.20 +0.1
2,192,168 - CA264_09375 0.20 -1.5
2,192,308 + CA264_09375 0.90 +0.4
2,192,315 - -0.2
2,192,342 + -1.0
2,192,343 - +0.5
2,192,415 + CA264_09380 0.20 -0.7
2,192,415 + CA264_09380 0.20 -0.8
2,192,444 + CA264_09380 0.27 -0.8
2,192,451 + CA264_09380 0.29 +0.6
2,192,464 + CA264_09380 0.32 +0.1
2,192,465 - CA264_09380 0.32 -0.2
2,192,532 + CA264_09380 0.49 +0.4
2,192,557 - CA264_09380 0.55 -0.1
2,192,634 + CA264_09380 0.74 +0.4
2,192,709 - -0.2
2,192,713 - -0.1
2,192,713 - +0.2
2,192,716 - +0.2
2,192,716 - -1.4
2,192,724 - -0.5
2,192,834 + +0.8
2,192,834 + +0.3
2,192,839 - +0.1
2,192,865 - -0.1
2,192,899 + -0.1
2,192,900 - -0.3
2,192,900 - -0.0
2,192,947 + +0.0
2,192,948 - +0.2
2,192,948 - -0.2
2,192,972 + +0.0
2,192,999 + -1.3
2,193,000 - -0.0

Or see this region's nucleotide sequence