Experiment: m.b. Chloride 750 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09275 and CA264_09280 are separated by 174 nucleotides CA264_09280 and CA264_09285 are separated by 54 nucleotides CA264_09285 and CA264_09290 are separated by 15 nucleotides
CA264_09275: CA264_09275 - epimerase, at 2,169,967 to 2,171,439
_09275
CA264_09280: CA264_09280 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 2,171,614 to 2,172,561
_09280
CA264_09285: CA264_09285 - anti-anti-sigma factor, at 2,172,616 to 2,172,993
_09285
CA264_09290: CA264_09290 - ribonuclease Z, at 2,173,009 to 2,173,926
_09290
Position (kb)
2171
2172
2173 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2170.657 kb on + strand, within CA264_09275 at 2170.657 kb on + strand, within CA264_09275 at 2170.665 kb on - strand, within CA264_09275 at 2170.708 kb on + strand, within CA264_09275 at 2170.709 kb on - strand, within CA264_09275 at 2170.729 kb on + strand, within CA264_09275 at 2170.730 kb on - strand, within CA264_09275 at 2170.794 kb on - strand, within CA264_09275 at 2170.825 kb on + strand, within CA264_09275 at 2170.826 kb on - strand, within CA264_09275 at 2170.924 kb on + strand, within CA264_09275 at 2170.924 kb on + strand, within CA264_09275 at 2170.924 kb on + strand, within CA264_09275 at 2170.925 kb on - strand, within CA264_09275 at 2171.047 kb on + strand, within CA264_09275 at 2171.050 kb on - strand, within CA264_09275 at 2171.254 kb on - strand, within CA264_09275 at 2171.254 kb on - strand, within CA264_09275 at 2171.254 kb on - strand, within CA264_09275 at 2171.437 kb on + strand at 2171.438 kb on - strand at 2171.459 kb on - strand at 2171.461 kb on - strand at 2171.461 kb on - strand at 2171.466 kb on - strand at 2171.473 kb on + strand at 2171.479 kb on + strand at 2171.491 kb on + strand at 2171.491 kb on + strand at 2171.513 kb on + strand at 2171.578 kb on + strand at 2171.578 kb on + strand at 2171.582 kb on + strand at 2171.597 kb on - strand at 2171.613 kb on - strand at 2171.771 kb on - strand, within CA264_09280 at 2171.784 kb on - strand, within CA264_09280 at 2171.843 kb on + strand, within CA264_09280 at 2171.895 kb on + strand, within CA264_09280 at 2171.947 kb on + strand, within CA264_09280 at 2171.948 kb on - strand, within CA264_09280 at 2172.104 kb on + strand, within CA264_09280 at 2172.104 kb on + strand, within CA264_09280 at 2172.104 kb on + strand, within CA264_09280 at 2172.105 kb on - strand, within CA264_09280 at 2172.208 kb on + strand, within CA264_09280 at 2172.225 kb on + strand, within CA264_09280 at 2172.284 kb on - strand, within CA264_09280 at 2172.446 kb on - strand, within CA264_09280 at 2172.450 kb on - strand, within CA264_09280 at 2172.450 kb on - strand, within CA264_09280 at 2172.457 kb on + strand, within CA264_09280 at 2172.458 kb on - strand, within CA264_09280 at 2172.498 kb on + strand at 2172.499 kb on - strand at 2172.499 kb on - strand at 2172.584 kb on - strand at 2172.596 kb on - strand at 2172.610 kb on + strand at 2172.611 kb on - strand at 2172.629 kb on + strand at 2172.633 kb on + strand at 2172.662 kb on + strand, within CA264_09285 at 2172.681 kb on + strand, within CA264_09285 at 2172.772 kb on + strand, within CA264_09285 at 2172.791 kb on + strand, within CA264_09285 at 2172.792 kb on - strand, within CA264_09285 at 2172.799 kb on - strand, within CA264_09285 at 2172.981 kb on + strand at 2172.982 kb on - strand at 2172.992 kb on - strand at 2173.086 kb on - strand at 2173.103 kb on - strand, within CA264_09290 at 2173.157 kb on + strand, within CA264_09290 at 2173.210 kb on + strand, within CA264_09290 at 2173.321 kb on + strand, within CA264_09290 at 2173.388 kb on + strand, within CA264_09290 at 2173.388 kb on + strand, within CA264_09290 at 2173.389 kb on - strand, within CA264_09290 at 2173.412 kb on + strand, within CA264_09290
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM remove 2,170,657 + CA264_09275 0.47 -0.1 2,170,657 + CA264_09275 0.47 -0.1 2,170,665 - CA264_09275 0.47 -0.1 2,170,708 + CA264_09275 0.50 -0.0 2,170,709 - CA264_09275 0.50 -0.2 2,170,729 + CA264_09275 0.52 +0.7 2,170,730 - CA264_09275 0.52 -1.1 2,170,794 - CA264_09275 0.56 -0.0 2,170,825 + CA264_09275 0.58 +1.6 2,170,826 - CA264_09275 0.58 -0.9 2,170,924 + CA264_09275 0.65 +0.2 2,170,924 + CA264_09275 0.65 -0.1 2,170,924 + CA264_09275 0.65 +1.6 2,170,925 - CA264_09275 0.65 +0.2 2,171,047 + CA264_09275 0.73 +1.1 2,171,050 - CA264_09275 0.74 +0.2 2,171,254 - CA264_09275 0.87 +0.0 2,171,254 - CA264_09275 0.87 +0.3 2,171,254 - CA264_09275 0.87 -0.6 2,171,437 + +0.3 2,171,438 - -1.7 2,171,459 - +0.2 2,171,461 - -1.9 2,171,461 - +0.2 2,171,466 - +0.6 2,171,473 + +0.2 2,171,479 + +0.7 2,171,491 + +0.6 2,171,491 + +0.7 2,171,513 + -0.2 2,171,578 + -0.4 2,171,578 + +0.6 2,171,582 + +1.4 2,171,597 - +0.0 2,171,613 - -0.1 2,171,771 - CA264_09280 0.17 -1.9 2,171,784 - CA264_09280 0.18 -1.1 2,171,843 + CA264_09280 0.24 +0.5 2,171,895 + CA264_09280 0.30 +1.2 2,171,947 + CA264_09280 0.35 +0.9 2,171,948 - CA264_09280 0.35 -0.2 2,172,104 + CA264_09280 0.52 +2.2 2,172,104 + CA264_09280 0.52 -0.4 2,172,104 + CA264_09280 0.52 +0.4 2,172,105 - CA264_09280 0.52 +0.1 2,172,208 + CA264_09280 0.63 -0.1 2,172,225 + CA264_09280 0.64 -0.3 2,172,284 - CA264_09280 0.71 -0.4 2,172,446 - CA264_09280 0.88 +1.6 2,172,450 - CA264_09280 0.88 -1.3 2,172,450 - CA264_09280 0.88 -0.2 2,172,457 + CA264_09280 0.89 -0.9 2,172,458 - CA264_09280 0.89 -0.5 2,172,498 + +0.6 2,172,499 - -0.5 2,172,499 - +0.4 2,172,584 - -0.9 2,172,596 - -1.6 2,172,610 + +0.5 2,172,611 - -1.6 2,172,629 + -2.1 2,172,633 + -1.4 2,172,662 + CA264_09285 0.12 -1.6 2,172,681 + CA264_09285 0.17 -1.3 2,172,772 + CA264_09285 0.41 -0.3 2,172,791 + CA264_09285 0.46 -2.1 2,172,792 - CA264_09285 0.47 -2.3 2,172,799 - CA264_09285 0.48 -1.4 2,172,981 + -2.3 2,172,982 - -0.8 2,172,992 - -2.3 2,173,086 - -0.3 2,173,103 - CA264_09290 0.10 -1.8 2,173,157 + CA264_09290 0.16 -0.5 2,173,210 + CA264_09290 0.22 +0.1 2,173,321 + CA264_09290 0.34 -0.4 2,173,388 + CA264_09290 0.41 +0.6 2,173,388 + CA264_09290 0.41 +0.1 2,173,389 - CA264_09290 0.41 +0.9 2,173,412 + CA264_09290 0.44 +0.4
Or see this region's nucleotide sequence