Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08270

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08260 and CA264_08265 are separated by 260 nucleotidesCA264_08265 and CA264_08270 are separated by 33 nucleotidesCA264_08270 and CA264_08275 are separated by 19 nucleotidesCA264_08275 and CA264_08280 are separated by 0 nucleotides CA264_08260: CA264_08260 - pseudouridine synthase, at 1,909,432 to 1,910,028 _08260 CA264_08265: CA264_08265 - iron-sulfur cluster assembly accessory protein, at 1,910,289 to 1,910,615 _08265 CA264_08270: CA264_08270 - Fe-S cluster assembly protein SufB, at 1,910,649 to 1,912,103 _08270 CA264_08275: CA264_08275 - ABC transporter ATP-binding protein, at 1,912,123 to 1,912,893 _08275 CA264_08280: CA264_08280 - Fe-S cluster assembly protein SufD, at 1,912,894 to 1,914,234 _08280 Position (kb) 1910 1911 1912 1913Strain fitness (log2 ratio) -2 -1 0 1 2at 1909.649 kb on - strand, within CA264_08260at 1909.714 kb on - strand, within CA264_08260at 1909.714 kb on - strand, within CA264_08260at 1909.719 kb on - strand, within CA264_08260at 1909.732 kb on + strand, within CA264_08260at 1909.733 kb on - strand, within CA264_08260at 1909.758 kb on + strand, within CA264_08260at 1909.759 kb on - strand, within CA264_08260at 1909.759 kb on - strand, within CA264_08260at 1909.759 kb on - strand, within CA264_08260at 1909.848 kb on + strand, within CA264_08260at 1909.848 kb on + strand, within CA264_08260at 1909.976 kb on + strandat 1910.042 kb on - strandat 1910.074 kb on + strandat 1910.135 kb on + strandat 1910.136 kb on - strandat 1910.136 kb on - strandat 1910.136 kb on - strandat 1910.136 kb on - strandat 1910.195 kb on - strandat 1910.199 kb on + strandat 1910.200 kb on - strandat 1910.204 kb on + strandat 1910.204 kb on + strandat 1910.226 kb on + strandat 1910.236 kb on - strandat 1910.240 kb on - strandat 1910.320 kb on - strandat 1910.320 kb on - strandat 1910.368 kb on + strand, within CA264_08265at 1910.368 kb on + strand, within CA264_08265at 1910.369 kb on - strand, within CA264_08265at 1910.472 kb on - strand, within CA264_08265at 1910.564 kb on + strand, within CA264_08265at 1910.666 kb on + strandat 1910.667 kb on - strandat 1910.667 kb on - strandat 1910.667 kb on - strandat 1910.669 kb on + strandat 1910.890 kb on + strand, within CA264_08270at 1910.890 kb on + strand, within CA264_08270at 1910.903 kb on + strand, within CA264_08270at 1910.914 kb on - strand, within CA264_08270at 1910.959 kb on + strand, within CA264_08270at 1910.960 kb on - strand, within CA264_08270at 1911.057 kb on - strand, within CA264_08270at 1911.075 kb on + strand, within CA264_08270at 1911.104 kb on + strand, within CA264_08270at 1911.240 kb on + strand, within CA264_08270at 1911.240 kb on + strand, within CA264_08270at 1911.241 kb on - strand, within CA264_08270at 1911.329 kb on + strand, within CA264_08270at 1911.357 kb on - strand, within CA264_08270at 1911.360 kb on + strand, within CA264_08270at 1911.448 kb on + strand, within CA264_08270at 1911.453 kb on + strand, within CA264_08270at 1911.454 kb on - strand, within CA264_08270at 1911.454 kb on - strand, within CA264_08270at 1911.508 kb on - strand, within CA264_08270at 1911.571 kb on + strand, within CA264_08270at 1911.572 kb on - strand, within CA264_08270at 1911.699 kb on + strand, within CA264_08270at 1911.728 kb on + strand, within CA264_08270at 1911.744 kb on - strand, within CA264_08270at 1911.744 kb on - strand, within CA264_08270at 1911.771 kb on + strand, within CA264_08270at 1911.866 kb on + strand, within CA264_08270at 1911.866 kb on + strand, within CA264_08270at 1911.866 kb on + strand, within CA264_08270at 1911.908 kb on - strand, within CA264_08270at 1911.908 kb on - strand, within CA264_08270at 1911.973 kb on + strandat 1911.973 kb on + strandat 1911.974 kb on - strandat 1912.012 kb on - strandat 1912.073 kb on - strandat 1912.096 kb on + strandat 1912.097 kb on - strandat 1912.097 kb on - strandat 1912.097 kb on - strandat 1912.097 kb on - strandat 1912.104 kb on + strandat 1912.127 kb on + strandat 1912.154 kb on + strandat 1912.181 kb on + strandat 1912.181 kb on + strandat 1912.181 kb on + strandat 1912.208 kb on + strand, within CA264_08275at 1912.280 kb on - strand, within CA264_08275at 1912.280 kb on - strand, within CA264_08275at 1912.281 kb on + strand, within CA264_08275at 1912.281 kb on + strand, within CA264_08275at 1912.286 kb on + strand, within CA264_08275at 1912.286 kb on + strand, within CA264_08275at 1912.343 kb on + strand, within CA264_08275at 1912.406 kb on - strand, within CA264_08275at 1912.440 kb on - strand, within CA264_08275at 1912.891 kb on + strandat 1912.891 kb on + strandat 1912.892 kb on - strandat 1912.892 kb on - strandat 1912.911 kb on + strandat 1912.914 kb on - strandat 1912.914 kb on - strandat 1912.989 kb on - strandat 1912.997 kb on + strandat 1913.066 kb on - strand, within CA264_08280at 1913.067 kb on + strand, within CA264_08280at 1913.068 kb on - strand, within CA264_08280

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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1,909,649 - CA264_08260 0.36 +0.9
1,909,714 - CA264_08260 0.47 -1.4
1,909,714 - CA264_08260 0.47 +0.4
1,909,719 - CA264_08260 0.48 +0.1
1,909,732 + CA264_08260 0.50 +0.7
1,909,733 - CA264_08260 0.50 -0.5
1,909,758 + CA264_08260 0.55 +2.1
1,909,759 - CA264_08260 0.55 +0.6
1,909,759 - CA264_08260 0.55 +0.2
1,909,759 - CA264_08260 0.55 +0.2
1,909,848 + CA264_08260 0.70 -0.1
1,909,848 + CA264_08260 0.70 +0.9
1,909,976 + -0.0
1,910,042 - +0.4
1,910,074 + +1.1
1,910,135 + +1.0
1,910,136 - +0.5
1,910,136 - +0.8
1,910,136 - +0.7
1,910,136 - +0.3
1,910,195 - +0.9
1,910,199 + +2.1
1,910,200 - +0.3
1,910,204 + +1.2
1,910,204 + +0.7
1,910,226 + +0.7
1,910,236 - +1.0
1,910,240 - +0.8
1,910,320 - +1.0
1,910,320 - +0.8
1,910,368 + CA264_08265 0.24 +1.1
1,910,368 + CA264_08265 0.24 +0.8
1,910,369 - CA264_08265 0.24 +0.7
1,910,472 - CA264_08265 0.56 +0.8
1,910,564 + CA264_08265 0.84 +1.3
1,910,666 + -0.6
1,910,667 - -0.2
1,910,667 - +0.3
1,910,667 - -0.2
1,910,669 + -2.3
1,910,890 + CA264_08270 0.17 -0.7
1,910,890 + CA264_08270 0.17 +0.6
1,910,903 + CA264_08270 0.17 -0.4
1,910,914 - CA264_08270 0.18 -1.3
1,910,959 + CA264_08270 0.21 -0.3
1,910,960 - CA264_08270 0.21 -0.7
1,911,057 - CA264_08270 0.28 -0.4
1,911,075 + CA264_08270 0.29 +0.6
1,911,104 + CA264_08270 0.31 -0.4
1,911,240 + CA264_08270 0.41 -0.9
1,911,240 + CA264_08270 0.41 -0.5
1,911,241 - CA264_08270 0.41 -0.4
1,911,329 + CA264_08270 0.47 -1.4
1,911,357 - CA264_08270 0.49 +0.1
1,911,360 + CA264_08270 0.49 +0.2
1,911,448 + CA264_08270 0.55 +2.3
1,911,453 + CA264_08270 0.55 -0.9
1,911,454 - CA264_08270 0.55 -0.1
1,911,454 - CA264_08270 0.55 +0.5
1,911,508 - CA264_08270 0.59 -0.1
1,911,571 + CA264_08270 0.63 -0.0
1,911,572 - CA264_08270 0.63 -0.5
1,911,699 + CA264_08270 0.72 -0.7
1,911,728 + CA264_08270 0.74 -0.7
1,911,744 - CA264_08270 0.75 -1.4
1,911,744 - CA264_08270 0.75 +0.1
1,911,771 + CA264_08270 0.77 -0.2
1,911,866 + CA264_08270 0.84 -1.6
1,911,866 + CA264_08270 0.84 +1.1
1,911,866 + CA264_08270 0.84 +0.3
1,911,908 - CA264_08270 0.87 -1.1
1,911,908 - CA264_08270 0.87 -0.4
1,911,973 + -1.4
1,911,973 + +0.3
1,911,974 - -0.5
1,912,012 - -0.0
1,912,073 - -0.4
1,912,096 + -0.6
1,912,097 - -0.7
1,912,097 - -0.9
1,912,097 - +0.8
1,912,097 - +0.0
1,912,104 + -0.2
1,912,127 + -0.4
1,912,154 + -1.1
1,912,181 + -0.3
1,912,181 + -1.4
1,912,181 + +0.4
1,912,208 + CA264_08275 0.11 -0.6
1,912,280 - CA264_08275 0.20 -0.5
1,912,280 - CA264_08275 0.20 +0.3
1,912,281 + CA264_08275 0.20 +1.9
1,912,281 + CA264_08275 0.20 +0.3
1,912,286 + CA264_08275 0.21 +0.1
1,912,286 + CA264_08275 0.21 +0.9
1,912,343 + CA264_08275 0.29 -0.2
1,912,406 - CA264_08275 0.37 -0.2
1,912,440 - CA264_08275 0.41 +1.5
1,912,891 + -0.1
1,912,891 + -0.0
1,912,892 - -0.4
1,912,892 - -0.2
1,912,911 + -1.3
1,912,914 - -0.1
1,912,914 - +1.3
1,912,989 - +1.6
1,912,997 + +0.3
1,913,066 - CA264_08280 0.13 +0.9
1,913,067 + CA264_08280 0.13 +0.6
1,913,068 - CA264_08280 0.13 +0.9

Or see this region's nucleotide sequence