Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06295

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06290 and CA264_06295 are separated by 122 nucleotidesCA264_06295 and CA264_06300 are separated by 27 nucleotides CA264_06290: CA264_06290 - amino-acid racemase, at 1,463,714 to 1,464,787 _06290 CA264_06295: CA264_06295 - carbonic anhydrase, at 1,464,910 to 1,465,533 _06295 CA264_06300: CA264_06300 - universal stress protein UspA, at 1,465,561 to 1,466,481 _06300 Position (kb) 1464 1465 1466Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1463.940 kb on - strand, within CA264_06290at 1463.941 kb on + strand, within CA264_06290at 1463.942 kb on - strand, within CA264_06290at 1463.944 kb on - strand, within CA264_06290at 1463.977 kb on + strand, within CA264_06290at 1463.979 kb on + strand, within CA264_06290at 1463.979 kb on + strand, within CA264_06290at 1463.980 kb on - strand, within CA264_06290at 1463.980 kb on - strand, within CA264_06290at 1463.984 kb on + strand, within CA264_06290at 1464.191 kb on - strand, within CA264_06290at 1464.191 kb on - strand, within CA264_06290at 1464.237 kb on + strand, within CA264_06290at 1464.237 kb on + strand, within CA264_06290at 1464.237 kb on + strand, within CA264_06290at 1464.246 kb on - strand, within CA264_06290at 1464.495 kb on + strand, within CA264_06290at 1464.588 kb on + strand, within CA264_06290at 1464.688 kb on + strandat 1464.688 kb on + strandat 1464.693 kb on - strandat 1464.693 kb on - strandat 1464.695 kb on - strandat 1464.695 kb on - strandat 1464.729 kb on - strandat 1464.731 kb on - strandat 1464.791 kb on + strandat 1464.821 kb on - strandat 1464.822 kb on + strandat 1464.868 kb on + strandat 1464.868 kb on + strandat 1464.880 kb on - strandat 1464.890 kb on + strandat 1464.899 kb on + strandat 1464.899 kb on + strandat 1464.901 kb on + strandat 1464.901 kb on + strandat 1464.901 kb on + strandat 1464.901 kb on + strandat 1464.901 kb on + strandat 1464.901 kb on + strandat 1464.905 kb on + strandat 1464.905 kb on + strandat 1464.906 kb on - strandat 1464.906 kb on - strandat 1464.906 kb on - strandat 1464.910 kb on - strandat 1464.910 kb on - strandat 1464.916 kb on + strandat 1465.025 kb on - strand, within CA264_06295at 1465.033 kb on - strand, within CA264_06295at 1465.098 kb on + strand, within CA264_06295at 1465.191 kb on + strand, within CA264_06295at 1465.191 kb on + strand, within CA264_06295at 1465.191 kb on + strand, within CA264_06295at 1465.191 kb on + strand, within CA264_06295at 1465.192 kb on - strand, within CA264_06295at 1465.192 kb on - strand, within CA264_06295at 1465.192 kb on - strand, within CA264_06295at 1465.192 kb on - strand, within CA264_06295at 1465.197 kb on + strand, within CA264_06295at 1465.197 kb on + strand, within CA264_06295at 1465.211 kb on - strand, within CA264_06295at 1465.211 kb on - strand, within CA264_06295at 1465.294 kb on + strand, within CA264_06295at 1465.294 kb on + strand, within CA264_06295at 1465.295 kb on - strand, within CA264_06295at 1465.300 kb on - strand, within CA264_06295at 1465.305 kb on + strand, within CA264_06295at 1465.306 kb on - strand, within CA264_06295at 1465.543 kb on - strandat 1465.612 kb on - strandat 1465.839 kb on + strand, within CA264_06300at 1465.843 kb on - strand, within CA264_06300at 1465.889 kb on + strand, within CA264_06300at 1465.890 kb on - strand, within CA264_06300at 1465.928 kb on + strand, within CA264_06300at 1466.007 kb on - strand, within CA264_06300at 1466.099 kb on - strand, within CA264_06300at 1466.146 kb on + strand, within CA264_06300at 1466.146 kb on + strand, within CA264_06300at 1466.147 kb on - strand, within CA264_06300at 1466.162 kb on - strand, within CA264_06300at 1466.216 kb on - strand, within CA264_06300at 1466.227 kb on + strand, within CA264_06300at 1466.228 kb on - strand, within CA264_06300at 1466.271 kb on + strand, within CA264_06300at 1466.272 kb on - strand, within CA264_06300at 1466.329 kb on + strand, within CA264_06300at 1466.383 kb on + strand, within CA264_06300at 1466.415 kb on - strandat 1466.508 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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1,463,940 - CA264_06290 0.21 -2.0
1,463,941 + CA264_06290 0.21 -2.1
1,463,942 - CA264_06290 0.21 -2.6
1,463,944 - CA264_06290 0.21 -1.1
1,463,977 + CA264_06290 0.24 -3.2
1,463,979 + CA264_06290 0.25 -1.1
1,463,979 + CA264_06290 0.25 -2.7
1,463,980 - CA264_06290 0.25 +0.1
1,463,980 - CA264_06290 0.25 +1.1
1,463,984 + CA264_06290 0.25 -1.9
1,464,191 - CA264_06290 0.44 -3.1
1,464,191 - CA264_06290 0.44 -0.7
1,464,237 + CA264_06290 0.49 -0.7
1,464,237 + CA264_06290 0.49 -0.3
1,464,237 + CA264_06290 0.49 -0.3
1,464,246 - CA264_06290 0.50 -2.5
1,464,495 + CA264_06290 0.73 -1.9
1,464,588 + CA264_06290 0.81 -2.9
1,464,688 + -3.3
1,464,688 + -0.4
1,464,693 - -3.4
1,464,693 - -1.4
1,464,695 - -3.8
1,464,695 - -2.8
1,464,729 - -1.6
1,464,731 - -3.2
1,464,791 + +0.4
1,464,821 - -1.1
1,464,822 + -0.2
1,464,868 + -0.5
1,464,868 + +0.9
1,464,880 - -0.3
1,464,890 + -0.4
1,464,899 + +0.1
1,464,899 + -1.1
1,464,901 + +0.6
1,464,901 + +0.4
1,464,901 + -0.9
1,464,901 + +0.5
1,464,901 + -0.8
1,464,901 + +0.5
1,464,905 + -0.0
1,464,905 + -0.6
1,464,906 - -0.1
1,464,906 - -0.7
1,464,906 - -0.3
1,464,910 - -0.7
1,464,910 - +2.1
1,464,916 + +0.1
1,465,025 - CA264_06295 0.18 -0.0
1,465,033 - CA264_06295 0.20 -0.4
1,465,098 + CA264_06295 0.30 -1.5
1,465,191 + CA264_06295 0.45 +2.1
1,465,191 + CA264_06295 0.45 -0.9
1,465,191 + CA264_06295 0.45 -0.3
1,465,191 + CA264_06295 0.45 -0.2
1,465,192 - CA264_06295 0.45 +0.7
1,465,192 - CA264_06295 0.45 -1.0
1,465,192 - CA264_06295 0.45 -0.4
1,465,192 - CA264_06295 0.45 +0.7
1,465,197 + CA264_06295 0.46 +0.2
1,465,197 + CA264_06295 0.46 -0.4
1,465,211 - CA264_06295 0.48 +0.1
1,465,211 - CA264_06295 0.48 -0.1
1,465,294 + CA264_06295 0.62 -0.1
1,465,294 + CA264_06295 0.62 +1.4
1,465,295 - CA264_06295 0.62 -0.2
1,465,300 - CA264_06295 0.62 +0.6
1,465,305 + CA264_06295 0.63 -0.1
1,465,306 - CA264_06295 0.63 -0.3
1,465,543 - -0.8
1,465,612 - -0.8
1,465,839 + CA264_06300 0.30 -0.5
1,465,843 - CA264_06300 0.31 +0.3
1,465,889 + CA264_06300 0.36 -0.3
1,465,890 - CA264_06300 0.36 +0.0
1,465,928 + CA264_06300 0.40 +0.7
1,466,007 - CA264_06300 0.48 -1.1
1,466,099 - CA264_06300 0.58 -0.7
1,466,146 + CA264_06300 0.64 -0.5
1,466,146 + CA264_06300 0.64 -1.5
1,466,147 - CA264_06300 0.64 -1.2
1,466,162 - CA264_06300 0.65 +0.3
1,466,216 - CA264_06300 0.71 -0.2
1,466,227 + CA264_06300 0.72 -1.6
1,466,228 - CA264_06300 0.72 -0.4
1,466,271 + CA264_06300 0.77 -0.8
1,466,272 - CA264_06300 0.77 +0.1
1,466,329 + CA264_06300 0.83 -0.3
1,466,383 + CA264_06300 0.89 -0.4
1,466,415 - +0.0
1,466,508 - +0.3

Or see this region's nucleotide sequence