Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06260

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06255 and CA264_06260 are separated by 30 nucleotidesCA264_06260 and CA264_06265 are separated by 601 nucleotidesCA264_06265 and CA264_06270 are separated by 2 nucleotides CA264_06255: CA264_06255 - argininosuccinate synthase, at 1,455,131 to 1,456,333 _06255 CA264_06260: CA264_06260 - N-acetyltransferase, at 1,456,364 to 1,457,038 _06260 CA264_06265: CA264_06265 - hypothetical protein, at 1,457,640 to 1,457,936 _06265 CA264_06270: CA264_06270 - aspartate aminotransferase, at 1,457,939 to 1,459,195 _06270 Position (kb) 1456 1457 1458Strain fitness (log2 ratio) -2 -1 0 1 2at 1455.375 kb on - strand, within CA264_06255at 1455.375 kb on - strand, within CA264_06255at 1455.467 kb on - strand, within CA264_06255at 1455.470 kb on + strand, within CA264_06255at 1455.470 kb on + strand, within CA264_06255at 1455.470 kb on + strand, within CA264_06255at 1455.536 kb on + strand, within CA264_06255at 1455.624 kb on - strand, within CA264_06255at 1455.660 kb on - strand, within CA264_06255at 1455.660 kb on - strand, within CA264_06255at 1455.861 kb on + strand, within CA264_06255at 1455.910 kb on + strand, within CA264_06255at 1455.942 kb on - strand, within CA264_06255at 1455.942 kb on - strand, within CA264_06255at 1456.015 kb on + strand, within CA264_06255at 1456.016 kb on - strand, within CA264_06255at 1456.117 kb on + strand, within CA264_06255at 1456.167 kb on - strand, within CA264_06255at 1456.175 kb on - strand, within CA264_06255at 1456.180 kb on - strand, within CA264_06255at 1456.233 kb on - strandat 1456.245 kb on + strandat 1456.248 kb on - strandat 1456.287 kb on + strandat 1456.323 kb on - strandat 1456.339 kb on + strandat 1456.343 kb on + strandat 1456.344 kb on - strandat 1456.570 kb on + strand, within CA264_06260at 1456.570 kb on + strand, within CA264_06260at 1456.624 kb on - strand, within CA264_06260at 1456.627 kb on + strand, within CA264_06260at 1456.639 kb on - strand, within CA264_06260at 1456.807 kb on - strand, within CA264_06260at 1456.810 kb on + strand, within CA264_06260at 1456.810 kb on + strand, within CA264_06260at 1456.810 kb on + strand, within CA264_06260at 1456.811 kb on - strand, within CA264_06260at 1456.908 kb on + strand, within CA264_06260at 1456.936 kb on + strand, within CA264_06260at 1457.078 kb on + strandat 1457.079 kb on - strandat 1457.082 kb on + strandat 1457.320 kb on + strandat 1457.361 kb on + strandat 1457.390 kb on + strandat 1457.391 kb on - strandat 1457.423 kb on + strandat 1457.429 kb on - strandat 1457.435 kb on - strandat 1457.489 kb on - strandat 1457.543 kb on + strandat 1457.545 kb on + strandat 1457.581 kb on - strandat 1457.581 kb on - strandat 1457.633 kb on + strandat 1457.663 kb on - strandat 1457.663 kb on - strandat 1457.841 kb on + strand, within CA264_06265at 1457.841 kb on + strand, within CA264_06265at 1457.841 kb on + strand, within CA264_06265at 1457.841 kb on + strand, within CA264_06265at 1457.841 kb on + strand, within CA264_06265at 1457.841 kb on + strand, within CA264_06265at 1457.842 kb on - strand, within CA264_06265at 1457.842 kb on - strand, within CA264_06265at 1457.842 kb on - strand, within CA264_06265at 1457.842 kb on - strand, within CA264_06265at 1457.842 kb on - strand, within CA264_06265at 1457.844 kb on - strand, within CA264_06265at 1457.844 kb on - strand, within CA264_06265at 1457.844 kb on - strand, within CA264_06265at 1457.844 kb on - strand, within CA264_06265at 1457.893 kb on + strand, within CA264_06265at 1457.893 kb on + strand, within CA264_06265at 1457.894 kb on - strand, within CA264_06265at 1457.940 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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1,455,375 - CA264_06255 0.20 +0.5
1,455,375 - CA264_06255 0.20 +0.3
1,455,467 - CA264_06255 0.28 -1.1
1,455,470 + CA264_06255 0.28 +0.7
1,455,470 + CA264_06255 0.28 -1.0
1,455,470 + CA264_06255 0.28 -0.0
1,455,536 + CA264_06255 0.34 -0.6
1,455,624 - CA264_06255 0.41 -0.8
1,455,660 - CA264_06255 0.44 -0.9
1,455,660 - CA264_06255 0.44 -0.7
1,455,861 + CA264_06255 0.61 +2.1
1,455,910 + CA264_06255 0.65 -1.1
1,455,942 - CA264_06255 0.67 -0.1
1,455,942 - CA264_06255 0.67 +1.0
1,456,015 + CA264_06255 0.73 -0.1
1,456,016 - CA264_06255 0.74 -1.3
1,456,117 + CA264_06255 0.82 -0.6
1,456,167 - CA264_06255 0.86 +1.1
1,456,175 - CA264_06255 0.87 -1.9
1,456,180 - CA264_06255 0.87 -0.9
1,456,233 - -1.1
1,456,245 + -0.2
1,456,248 - +0.3
1,456,287 + -0.2
1,456,323 - -1.1
1,456,339 + -0.5
1,456,343 + +0.4
1,456,344 - -0.5
1,456,570 + CA264_06260 0.31 -0.6
1,456,570 + CA264_06260 0.31 +0.5
1,456,624 - CA264_06260 0.39 -0.9
1,456,627 + CA264_06260 0.39 -0.2
1,456,639 - CA264_06260 0.41 -1.4
1,456,807 - CA264_06260 0.66 -0.3
1,456,810 + CA264_06260 0.66 -0.4
1,456,810 + CA264_06260 0.66 +0.6
1,456,810 + CA264_06260 0.66 -0.8
1,456,811 - CA264_06260 0.66 -0.4
1,456,908 + CA264_06260 0.81 -0.0
1,456,936 + CA264_06260 0.85 -1.6
1,457,078 + -1.4
1,457,079 - -0.0
1,457,082 + -0.9
1,457,320 + -1.6
1,457,361 + -0.3
1,457,390 + -0.3
1,457,391 - +0.9
1,457,423 + +0.0
1,457,429 - +0.4
1,457,435 - -0.0
1,457,489 - -1.7
1,457,543 + +0.3
1,457,545 + +0.4
1,457,581 - +0.4
1,457,581 - -0.5
1,457,633 + -0.4
1,457,663 - +1.5
1,457,663 - -0.1
1,457,841 + CA264_06265 0.68 +0.1
1,457,841 + CA264_06265 0.68 -0.8
1,457,841 + CA264_06265 0.68 -0.5
1,457,841 + CA264_06265 0.68 -1.1
1,457,841 + CA264_06265 0.68 +0.5
1,457,841 + CA264_06265 0.68 -0.2
1,457,842 - CA264_06265 0.68 -0.2
1,457,842 - CA264_06265 0.68 -0.2
1,457,842 - CA264_06265 0.68 +0.7
1,457,842 - CA264_06265 0.68 -0.3
1,457,842 - CA264_06265 0.68 -0.1
1,457,844 - CA264_06265 0.69 -0.5
1,457,844 - CA264_06265 0.69 -0.8
1,457,844 - CA264_06265 0.69 -1.3
1,457,844 - CA264_06265 0.69 -0.1
1,457,893 + CA264_06265 0.85 -0.2
1,457,893 + CA264_06265 0.85 -0.4
1,457,894 - CA264_06265 0.86 +0.6
1,457,940 + -0.5

Or see this region's nucleotide sequence