Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06130

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06125 and CA264_06130 are separated by 10 nucleotidesCA264_06130 and CA264_06135 are separated by 77 nucleotides CA264_06125: CA264_06125 - alkyl hydroperoxide reductase, at 1,429,635 to 1,430,753 _06125 CA264_06130: CA264_06130 - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 1,430,764 to 1,432,221 _06130 CA264_06135: CA264_06135 - alanine--tRNA ligase, at 1,432,299 to 1,434,935 _06135 Position (kb) 1430 1431 1432 1433Strain fitness (log2 ratio) -1 0 1at 1430.030 kb on + strand, within CA264_06125at 1430.100 kb on - strand, within CA264_06125at 1430.101 kb on + strand, within CA264_06125at 1430.101 kb on + strand, within CA264_06125at 1430.451 kb on + strand, within CA264_06125at 1430.452 kb on - strand, within CA264_06125at 1430.452 kb on - strand, within CA264_06125at 1430.610 kb on + strand, within CA264_06125at 1430.688 kb on - strandat 1432.255 kb on + strandat 1432.255 kb on + strandat 1432.266 kb on - strandat 1432.294 kb on - strandat 1432.314 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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1,430,030 + CA264_06125 0.35 -0.2
1,430,100 - CA264_06125 0.42 -0.7
1,430,101 + CA264_06125 0.42 -0.2
1,430,101 + CA264_06125 0.42 -1.0
1,430,451 + CA264_06125 0.73 +0.9
1,430,452 - CA264_06125 0.73 -0.6
1,430,452 - CA264_06125 0.73 +0.3
1,430,610 + CA264_06125 0.87 +0.8
1,430,688 - +0.5
1,432,255 + +0.1
1,432,255 + +0.3
1,432,266 - -0.8
1,432,294 - +0.3
1,432,314 - -0.9

Or see this region's nucleotide sequence