Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05380

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05375 and CA264_05380 are separated by 312 nucleotidesCA264_05380 and CA264_05385 are separated by 82 nucleotidesCA264_05385 and CA264_05390 are separated by 300 nucleotides CA264_05375: CA264_05375 - hypothetical protein, at 1,246,680 to 1,248,476 _05375 CA264_05380: CA264_05380 - glutamine synthetase type III, at 1,248,789 to 1,250,978 _05380 CA264_05385: CA264_05385 - hypothetical protein, at 1,251,061 to 1,251,429 _05385 CA264_05390: CA264_05390 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 1,251,730 to 1,253,703 _05390 Position (kb) 1248 1249 1250 1251Strain fitness (log2 ratio) -2 -1 0 1 2at 1247.815 kb on + strand, within CA264_05375at 1248.028 kb on + strand, within CA264_05375at 1248.036 kb on - strand, within CA264_05375at 1248.263 kb on + strand, within CA264_05375at 1248.264 kb on - strand, within CA264_05375at 1248.265 kb on + strand, within CA264_05375at 1248.266 kb on - strand, within CA264_05375at 1248.266 kb on - strand, within CA264_05375at 1248.269 kb on - strand, within CA264_05375at 1248.269 kb on - strand, within CA264_05375at 1248.269 kb on - strand, within CA264_05375at 1248.336 kb on + strandat 1248.336 kb on + strandat 1248.336 kb on + strandat 1248.336 kb on + strandat 1248.337 kb on - strandat 1248.339 kb on - strandat 1248.339 kb on - strandat 1248.339 kb on - strandat 1248.341 kb on + strandat 1248.342 kb on - strandat 1248.342 kb on - strandat 1248.346 kb on + strandat 1248.346 kb on + strandat 1248.347 kb on - strandat 1248.380 kb on - strandat 1248.411 kb on - strandat 1248.437 kb on - strandat 1248.437 kb on - strandat 1248.438 kb on + strandat 1248.449 kb on + strandat 1248.460 kb on - strandat 1248.460 kb on - strandat 1248.462 kb on + strandat 1248.463 kb on - strandat 1248.465 kb on - strandat 1248.469 kb on + strandat 1248.470 kb on - strandat 1248.531 kb on - strandat 1248.537 kb on + strandat 1248.537 kb on + strandat 1248.539 kb on + strandat 1248.539 kb on + strandat 1248.540 kb on - strandat 1248.753 kb on - strandat 1250.996 kb on + strandat 1250.996 kb on + strandat 1251.020 kb on + strandat 1251.082 kb on + strandat 1251.083 kb on - strandat 1251.110 kb on - strand, within CA264_05385at 1251.157 kb on + strand, within CA264_05385at 1251.158 kb on - strand, within CA264_05385at 1251.175 kb on + strand, within CA264_05385at 1251.175 kb on + strand, within CA264_05385at 1251.175 kb on + strand, within CA264_05385at 1251.175 kb on + strand, within CA264_05385at 1251.175 kb on + strand, within CA264_05385at 1251.176 kb on - strand, within CA264_05385at 1251.323 kb on - strand, within CA264_05385at 1251.323 kb on - strand, within CA264_05385at 1251.324 kb on + strand, within CA264_05385at 1251.324 kb on + strand, within CA264_05385at 1251.324 kb on + strand, within CA264_05385at 1251.325 kb on - strand, within CA264_05385at 1251.429 kb on + strandat 1251.500 kb on + strandat 1251.592 kb on + strandat 1251.597 kb on - strandat 1251.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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1,247,815 + CA264_05375 0.63 -0.7
1,248,028 + CA264_05375 0.75 +0.0
1,248,036 - CA264_05375 0.75 -0.3
1,248,263 + CA264_05375 0.88 -0.1
1,248,264 - CA264_05375 0.88 -1.3
1,248,265 + CA264_05375 0.88 -0.6
1,248,266 - CA264_05375 0.88 -0.2
1,248,266 - CA264_05375 0.88 -0.5
1,248,269 - CA264_05375 0.88 -0.0
1,248,269 - CA264_05375 0.88 -1.0
1,248,269 - CA264_05375 0.88 -0.3
1,248,336 + -2.3
1,248,336 + +0.5
1,248,336 + -0.3
1,248,336 + +0.5
1,248,337 - -0.4
1,248,339 - +0.1
1,248,339 - +0.7
1,248,339 - -0.8
1,248,341 + +0.3
1,248,342 - +0.9
1,248,342 - -0.8
1,248,346 + -1.9
1,248,346 + -0.6
1,248,347 - -1.1
1,248,380 - -0.3
1,248,411 - +0.3
1,248,437 - -0.6
1,248,437 - -0.2
1,248,438 + -0.3
1,248,449 + -0.8
1,248,460 - -0.1
1,248,460 - +0.2
1,248,462 + -0.6
1,248,463 - -0.3
1,248,465 - -0.2
1,248,469 + -0.1
1,248,470 - -0.3
1,248,531 - -0.3
1,248,537 + -0.3
1,248,537 + -1.3
1,248,539 + +0.0
1,248,539 + +0.2
1,248,540 - -1.0
1,248,753 - -0.1
1,250,996 + -0.0
1,250,996 + -0.1
1,251,020 + -0.4
1,251,082 + +0.0
1,251,083 - +0.9
1,251,110 - CA264_05385 0.13 -0.8
1,251,157 + CA264_05385 0.26 +1.9
1,251,158 - CA264_05385 0.26 -0.2
1,251,175 + CA264_05385 0.31 -0.4
1,251,175 + CA264_05385 0.31 +0.5
1,251,175 + CA264_05385 0.31 -0.5
1,251,175 + CA264_05385 0.31 +0.0
1,251,175 + CA264_05385 0.31 -0.3
1,251,176 - CA264_05385 0.31 -0.1
1,251,323 - CA264_05385 0.71 +0.0
1,251,323 - CA264_05385 0.71 -1.0
1,251,324 + CA264_05385 0.71 -2.4
1,251,324 + CA264_05385 0.71 -0.6
1,251,324 + CA264_05385 0.71 -1.1
1,251,325 - CA264_05385 0.72 -1.3
1,251,429 + -0.1
1,251,500 + -0.1
1,251,592 + -1.4
1,251,597 - +0.4
1,251,689 + +0.4

Or see this region's nucleotide sequence