Experiment: m.b. Chloride 750 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02380 and CA264_02385 are separated by 212 nucleotides CA264_02385 and CA264_02390 are separated by 72 nucleotides
CA264_02380: CA264_02380 - homoserine dehydrogenase, at 550,252 to 551,511
_02380
CA264_02385: CA264_02385 - hypothetical protein, at 551,724 to 552,410
_02385
CA264_02390: CA264_02390 - diaminopimelate decarboxylase, at 552,483 to 553,625
_02390
Position (kb) 551
552
553 Strain fitness (log2 ratio) -2
-1
0
1
2 at 550.879 kb on - strand, within CA264_02380 at 550.909 kb on - strand, within CA264_02380 at 550.909 kb on - strand, within CA264_02380 at 550.910 kb on + strand, within CA264_02380 at 550.910 kb on + strand, within CA264_02380 at 550.911 kb on - strand, within CA264_02380 at 550.911 kb on - strand, within CA264_02380 at 550.911 kb on - strand, within CA264_02380 at 551.053 kb on + strand, within CA264_02380 at 551.098 kb on + strand, within CA264_02380 at 551.191 kb on + strand, within CA264_02380 at 551.197 kb on + strand, within CA264_02380 at 551.197 kb on + strand, within CA264_02380 at 551.198 kb on - strand, within CA264_02380 at 551.198 kb on - strand, within CA264_02380 at 551.218 kb on + strand, within CA264_02380 at 551.276 kb on + strand, within CA264_02380 at 551.279 kb on - strand, within CA264_02380 at 551.279 kb on - strand, within CA264_02380 at 551.346 kb on - strand, within CA264_02380 at 551.457 kb on + strand at 551.458 kb on - strand at 551.475 kb on - strand at 551.537 kb on - strand at 551.564 kb on - strand at 551.568 kb on - strand at 551.574 kb on - strand at 551.672 kb on - strand at 551.695 kb on + strand at 551.695 kb on + strand at 551.696 kb on - strand at 551.771 kb on - strand at 551.792 kb on + strand at 551.793 kb on - strand, within CA264_02385 at 551.793 kb on - strand, within CA264_02385 at 551.829 kb on - strand, within CA264_02385 at 551.836 kb on - strand, within CA264_02385 at 551.837 kb on + strand, within CA264_02385 at 551.837 kb on + strand, within CA264_02385 at 551.841 kb on + strand, within CA264_02385 at 551.841 kb on + strand, within CA264_02385 at 551.842 kb on - strand, within CA264_02385 at 551.842 kb on - strand, within CA264_02385 at 551.842 kb on - strand, within CA264_02385 at 551.847 kb on + strand, within CA264_02385 at 551.953 kb on - strand, within CA264_02385 at 551.954 kb on + strand, within CA264_02385 at 552.085 kb on + strand, within CA264_02385 at 552.086 kb on - strand, within CA264_02385 at 552.086 kb on - strand, within CA264_02385 at 552.090 kb on + strand, within CA264_02385 at 552.090 kb on + strand, within CA264_02385 at 552.091 kb on - strand, within CA264_02385 at 552.152 kb on - strand, within CA264_02385 at 552.152 kb on - strand, within CA264_02385 at 552.294 kb on + strand, within CA264_02385 at 552.414 kb on - strand at 552.414 kb on - strand at 552.468 kb on + strand at 552.470 kb on + strand at 552.490 kb on + strand at 552.490 kb on + strand at 552.521 kb on - strand at 552.688 kb on - strand, within CA264_02390 at 552.720 kb on + strand, within CA264_02390 at 552.781 kb on + strand, within CA264_02390 at 552.932 kb on - strand, within CA264_02390 at 552.932 kb on - strand, within CA264_02390 at 552.932 kb on - strand, within CA264_02390 at 553.014 kb on + strand, within CA264_02390 at 553.022 kb on + strand, within CA264_02390 at 553.035 kb on - strand, within CA264_02390 at 553.102 kb on - strand, within CA264_02390 at 553.183 kb on + strand, within CA264_02390 at 553.184 kb on - strand, within CA264_02390 at 553.184 kb on - strand, within CA264_02390 at 553.187 kb on + strand, within CA264_02390 at 553.188 kb on - strand, within CA264_02390 at 553.287 kb on - strand, within CA264_02390 at 553.333 kb on - strand, within CA264_02390
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM remove 550,879 - CA264_02380 0.50 -0.1 550,909 - CA264_02380 0.52 +0.1 550,909 - CA264_02380 0.52 -0.1 550,910 + CA264_02380 0.52 +0.1 550,910 + CA264_02380 0.52 -1.1 550,911 - CA264_02380 0.52 +0.6 550,911 - CA264_02380 0.52 -0.8 550,911 - CA264_02380 0.52 -0.1 551,053 + CA264_02380 0.64 -0.2 551,098 + CA264_02380 0.67 -0.7 551,191 + CA264_02380 0.75 -1.2 551,197 + CA264_02380 0.75 -0.7 551,197 + CA264_02380 0.75 +1.3 551,198 - CA264_02380 0.75 -0.1 551,198 - CA264_02380 0.75 -0.1 551,218 + CA264_02380 0.77 -0.7 551,276 + CA264_02380 0.81 +0.4 551,279 - CA264_02380 0.82 -0.2 551,279 - CA264_02380 0.82 +1.9 551,346 - CA264_02380 0.87 -1.3 551,457 + +0.2 551,458 - +0.3 551,475 - +0.5 551,537 - +0.3 551,564 - -0.8 551,568 - -1.2 551,574 - -0.4 551,672 - +0.5 551,695 + -0.4 551,695 + -0.1 551,696 - +0.3 551,771 - +0.6 551,792 + -0.3 551,793 - CA264_02385 0.10 +1.1 551,793 - CA264_02385 0.10 -0.3 551,829 - CA264_02385 0.15 -0.3 551,836 - CA264_02385 0.16 -0.4 551,837 + CA264_02385 0.16 +1.9 551,837 + CA264_02385 0.16 -1.7 551,841 + CA264_02385 0.17 -0.5 551,841 + CA264_02385 0.17 +1.0 551,842 - CA264_02385 0.17 -2.0 551,842 - CA264_02385 0.17 -0.6 551,842 - CA264_02385 0.17 +0.4 551,847 + CA264_02385 0.18 +0.1 551,953 - CA264_02385 0.33 +1.0 551,954 + CA264_02385 0.33 +2.2 552,085 + CA264_02385 0.53 -0.7 552,086 - CA264_02385 0.53 +0.8 552,086 - CA264_02385 0.53 -0.1 552,090 + CA264_02385 0.53 -0.0 552,090 + CA264_02385 0.53 -0.3 552,091 - CA264_02385 0.53 -0.6 552,152 - CA264_02385 0.62 -1.3 552,152 - CA264_02385 0.62 -1.1 552,294 + CA264_02385 0.83 -0.1 552,414 - -0.2 552,414 - +0.7 552,468 + -0.2 552,470 + +1.5 552,490 + +0.2 552,490 + -1.4 552,521 - +0.7 552,688 - CA264_02390 0.18 +1.9 552,720 + CA264_02390 0.21 -0.9 552,781 + CA264_02390 0.26 -1.2 552,932 - CA264_02390 0.39 -0.5 552,932 - CA264_02390 0.39 -0.2 552,932 - CA264_02390 0.39 -0.8 553,014 + CA264_02390 0.46 -1.1 553,022 + CA264_02390 0.47 -1.3 553,035 - CA264_02390 0.48 -0.6 553,102 - CA264_02390 0.54 +0.3 553,183 + CA264_02390 0.61 -1.1 553,184 - CA264_02390 0.61 +0.5 553,184 - CA264_02390 0.61 -0.8 553,187 + CA264_02390 0.62 -1.6 553,188 - CA264_02390 0.62 -0.2 553,287 - CA264_02390 0.70 -0.7 553,333 - CA264_02390 0.74 +0.1
Or see this region's nucleotide sequence