Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01545

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01535 and CA264_01540 are separated by 440 nucleotidesCA264_01540 and CA264_01545 are separated by 147 nucleotidesCA264_01545 and CA264_01550 are separated by 2 nucleotides CA264_01535: CA264_01535 - hypothetical protein, at 363,821 to 364,003 _01535 CA264_01540: CA264_01540 - hypothetical protein, at 364,444 to 364,767 _01540 CA264_01545: CA264_01545 - 3-deoxy-7-phosphoheptulonate synthase, at 364,915 to 366,036 _01545 CA264_01550: CA264_01550 - aminotransferase, at 366,039 to 367,220 _01550 Position (kb) 364 365 366 367Strain fitness (log2 ratio) -2 -1 0 1 2at 364.006 kb on + strandat 364.093 kb on - strandat 364.103 kb on + strandat 364.103 kb on + strandat 364.104 kb on - strandat 364.104 kb on - strandat 364.104 kb on - strandat 364.105 kb on + strandat 364.106 kb on - strandat 364.106 kb on - strandat 364.115 kb on - strandat 364.115 kb on - strandat 364.232 kb on + strandat 364.232 kb on + strandat 364.232 kb on + strandat 364.233 kb on - strandat 364.233 kb on - strandat 364.269 kb on - strandat 364.269 kb on - strandat 364.275 kb on + strandat 364.281 kb on + strandat 364.424 kb on - strandat 364.424 kb on - strandat 364.429 kb on + strandat 364.429 kb on + strandat 364.446 kb on - strandat 364.446 kb on - strandat 364.446 kb on - strandat 364.588 kb on - strand, within CA264_01540at 364.611 kb on - strand, within CA264_01540at 364.675 kb on - strand, within CA264_01540at 364.675 kb on - strand, within CA264_01540at 364.677 kb on - strand, within CA264_01540at 364.689 kb on + strand, within CA264_01540at 364.689 kb on + strand, within CA264_01540at 364.693 kb on + strand, within CA264_01540at 364.693 kb on + strand, within CA264_01540at 364.694 kb on - strand, within CA264_01540at 364.694 kb on - strand, within CA264_01540at 364.712 kb on + strand, within CA264_01540at 364.719 kb on + strand, within CA264_01540at 364.773 kb on + strandat 364.781 kb on + strandat 364.782 kb on - strandat 364.916 kb on + strandat 364.916 kb on + strandat 364.917 kb on - strandat 364.989 kb on + strandat 364.990 kb on - strandat 365.622 kb on + strand, within CA264_01545at 365.623 kb on - strand, within CA264_01545at 365.635 kb on + strand, within CA264_01545at 365.761 kb on + strand, within CA264_01545at 365.761 kb on + strand, within CA264_01545at 365.771 kb on - strand, within CA264_01545at 366.000 kb on + strandat 366.018 kb on + strandat 366.025 kb on - strandat 366.030 kb on + strandat 366.030 kb on + strandat 366.030 kb on + strandat 366.031 kb on - strandat 366.043 kb on - strandat 366.043 kb on - strandat 366.205 kb on + strand, within CA264_01550at 366.214 kb on - strand, within CA264_01550at 366.285 kb on + strand, within CA264_01550at 366.286 kb on - strand, within CA264_01550at 366.329 kb on - strand, within CA264_01550at 366.417 kb on + strand, within CA264_01550at 366.439 kb on - strand, within CA264_01550at 366.439 kb on - strand, within CA264_01550at 366.498 kb on - strand, within CA264_01550at 366.550 kb on - strand, within CA264_01550at 366.551 kb on + strand, within CA264_01550at 366.556 kb on - strand, within CA264_01550at 366.642 kb on + strand, within CA264_01550at 366.659 kb on + strand, within CA264_01550at 366.698 kb on - strand, within CA264_01550at 366.717 kb on + strand, within CA264_01550at 366.718 kb on - strand, within CA264_01550at 366.790 kb on + strand, within CA264_01550at 366.896 kb on + strand, within CA264_01550at 366.961 kb on + strand, within CA264_01550at 366.962 kb on - strand, within CA264_01550at 366.962 kb on - strand, within CA264_01550at 366.973 kb on + strand, within CA264_01550

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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364,006 + -1.1
364,093 - -0.4
364,103 + -1.8
364,103 + -0.5
364,104 - +0.3
364,104 - +0.2
364,104 - -0.2
364,105 + -1.0
364,106 - -1.3
364,106 - +0.7
364,115 - -0.0
364,115 - -0.8
364,232 + -0.1
364,232 + +1.0
364,232 + +1.4
364,233 - +2.0
364,233 - -1.0
364,269 - -0.4
364,269 - -0.4
364,275 + -0.2
364,281 + +1.2
364,424 - -1.2
364,424 - +0.3
364,429 + -1.4
364,429 + +0.1
364,446 - +0.1
364,446 - +0.7
364,446 - -0.5
364,588 - CA264_01540 0.44 -0.5
364,611 - CA264_01540 0.52 -0.5
364,675 - CA264_01540 0.71 +0.2
364,675 - CA264_01540 0.71 -0.1
364,677 - CA264_01540 0.72 +2.3
364,689 + CA264_01540 0.76 +0.5
364,689 + CA264_01540 0.76 +1.3
364,693 + CA264_01540 0.77 -1.9
364,693 + CA264_01540 0.77 +0.0
364,694 - CA264_01540 0.77 -0.5
364,694 - CA264_01540 0.77 -0.1
364,712 + CA264_01540 0.83 +0.2
364,719 + CA264_01540 0.85 -0.2
364,773 + -0.5
364,781 + -0.3
364,782 - -0.2
364,916 + -0.8
364,916 + -0.4
364,917 - -0.9
364,989 + +0.1
364,990 - -0.4
365,622 + CA264_01545 0.63 +2.0
365,623 - CA264_01545 0.63 +0.7
365,635 + CA264_01545 0.64 -0.2
365,761 + CA264_01545 0.75 +0.1
365,761 + CA264_01545 0.75 +0.7
365,771 - CA264_01545 0.76 +0.3
366,000 + -0.1
366,018 + -1.0
366,025 - -0.1
366,030 + +0.7
366,030 + -0.3
366,030 + +0.2
366,031 - +1.3
366,043 - -0.3
366,043 - +0.3
366,205 + CA264_01550 0.14 +0.3
366,214 - CA264_01550 0.15 +0.6
366,285 + CA264_01550 0.21 -0.0
366,286 - CA264_01550 0.21 -0.2
366,329 - CA264_01550 0.25 +0.2
366,417 + CA264_01550 0.32 -0.2
366,439 - CA264_01550 0.34 +0.4
366,439 - CA264_01550 0.34 -0.9
366,498 - CA264_01550 0.39 -0.4
366,550 - CA264_01550 0.43 -0.7
366,551 + CA264_01550 0.43 -0.2
366,556 - CA264_01550 0.44 -0.7
366,642 + CA264_01550 0.51 +0.5
366,659 + CA264_01550 0.52 -0.4
366,698 - CA264_01550 0.56 +0.9
366,717 + CA264_01550 0.57 -2.1
366,718 - CA264_01550 0.57 -1.0
366,790 + CA264_01550 0.64 -1.1
366,896 + CA264_01550 0.73 -0.5
366,961 + CA264_01550 0.78 -0.1
366,962 - CA264_01550 0.78 -1.7
366,962 - CA264_01550 0.78 +0.4
366,973 + CA264_01550 0.79 -1.8

Or see this region's nucleotide sequence