Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00490

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00485 and CA264_00490 are separated by 3 nucleotidesCA264_00490 and CA264_00495 are separated by 287 nucleotides CA264_00485: CA264_00485 - peptidase M4, at 106,154 to 107,341 _00485 CA264_00490: CA264_00490 - TonB-dependent siderophore receptor, at 107,345 to 109,738 _00490 CA264_00495: CA264_00495 - hypothetical protein, at 110,026 to 111,225 _00495 Position (kb) 107 108 109 110Strain fitness (log2 ratio) -2 -1 0 1 2 3at 106.346 kb on + strand, within CA264_00485at 106.346 kb on + strand, within CA264_00485at 106.347 kb on - strand, within CA264_00485at 106.347 kb on - strand, within CA264_00485at 106.348 kb on + strand, within CA264_00485at 106.348 kb on + strand, within CA264_00485at 106.348 kb on + strand, within CA264_00485at 106.349 kb on - strand, within CA264_00485at 106.349 kb on - strand, within CA264_00485at 106.353 kb on + strand, within CA264_00485at 106.353 kb on + strand, within CA264_00485at 106.354 kb on - strand, within CA264_00485at 106.354 kb on - strand, within CA264_00485at 106.354 kb on - strand, within CA264_00485at 106.354 kb on - strand, within CA264_00485at 106.404 kb on + strand, within CA264_00485at 106.405 kb on - strand, within CA264_00485at 106.449 kb on + strand, within CA264_00485at 106.460 kb on + strand, within CA264_00485at 106.502 kb on + strand, within CA264_00485at 106.503 kb on - strand, within CA264_00485at 106.607 kb on - strand, within CA264_00485at 106.697 kb on - strand, within CA264_00485at 106.701 kb on - strand, within CA264_00485at 106.742 kb on + strand, within CA264_00485at 106.788 kb on + strand, within CA264_00485at 106.788 kb on + strand, within CA264_00485at 106.788 kb on + strand, within CA264_00485at 106.868 kb on + strand, within CA264_00485at 106.869 kb on - strand, within CA264_00485at 106.869 kb on - strand, within CA264_00485at 106.869 kb on - strand, within CA264_00485at 106.881 kb on - strand, within CA264_00485at 106.886 kb on + strand, within CA264_00485at 106.887 kb on - strand, within CA264_00485at 106.919 kb on + strand, within CA264_00485at 106.919 kb on + strand, within CA264_00485at 106.920 kb on - strand, within CA264_00485at 106.920 kb on - strand, within CA264_00485at 106.922 kb on - strand, within CA264_00485at 106.936 kb on + strand, within CA264_00485at 106.954 kb on - strand, within CA264_00485at 106.954 kb on - strand, within CA264_00485at 106.957 kb on - strand, within CA264_00485at 106.957 kb on - strand, within CA264_00485at 106.957 kb on - strand, within CA264_00485at 107.026 kb on - strand, within CA264_00485at 107.047 kb on - strand, within CA264_00485at 107.050 kb on - strand, within CA264_00485at 107.070 kb on + strand, within CA264_00485at 107.071 kb on - strand, within CA264_00485at 107.073 kb on + strand, within CA264_00485at 107.074 kb on - strand, within CA264_00485at 107.074 kb on - strand, within CA264_00485at 107.076 kb on - strand, within CA264_00485at 107.076 kb on - strand, within CA264_00485at 107.209 kb on - strand, within CA264_00485at 107.250 kb on - strandat 107.250 kb on - strandat 107.341 kb on + strandat 107.342 kb on - strandat 107.346 kb on + strandat 107.347 kb on - strandat 107.400 kb on + strandat 107.401 kb on - strandat 107.403 kb on + strandat 107.403 kb on + strandat 107.424 kb on + strandat 107.437 kb on - strandat 107.457 kb on + strandat 107.639 kb on + strand, within CA264_00490at 107.639 kb on + strand, within CA264_00490at 107.645 kb on + strand, within CA264_00490at 107.652 kb on + strand, within CA264_00490at 107.693 kb on + strand, within CA264_00490at 107.748 kb on + strand, within CA264_00490at 107.749 kb on - strand, within CA264_00490at 107.754 kb on + strand, within CA264_00490at 107.759 kb on - strand, within CA264_00490at 107.759 kb on - strand, within CA264_00490at 107.968 kb on + strand, within CA264_00490at 107.968 kb on + strand, within CA264_00490at 108.006 kb on - strand, within CA264_00490at 108.022 kb on + strand, within CA264_00490at 108.022 kb on + strand, within CA264_00490at 108.124 kb on - strand, within CA264_00490at 108.207 kb on + strand, within CA264_00490at 108.220 kb on - strand, within CA264_00490at 108.220 kb on - strand, within CA264_00490at 108.235 kb on + strand, within CA264_00490at 108.240 kb on - strand, within CA264_00490at 108.240 kb on - strand, within CA264_00490at 108.244 kb on + strand, within CA264_00490at 108.314 kb on + strand, within CA264_00490at 108.314 kb on + strand, within CA264_00490at 108.320 kb on - strand, within CA264_00490at 108.348 kb on + strand, within CA264_00490at 108.369 kb on + strand, within CA264_00490at 108.419 kb on - strand, within CA264_00490at 108.518 kb on + strand, within CA264_00490at 108.717 kb on + strand, within CA264_00490at 108.793 kb on + strand, within CA264_00490at 108.820 kb on - strand, within CA264_00490at 108.837 kb on + strand, within CA264_00490at 108.838 kb on - strand, within CA264_00490at 108.946 kb on - strand, within CA264_00490at 109.011 kb on + strand, within CA264_00490at 109.043 kb on - strand, within CA264_00490at 109.179 kb on + strand, within CA264_00490at 109.179 kb on + strand, within CA264_00490at 109.179 kb on + strand, within CA264_00490at 109.180 kb on - strand, within CA264_00490at 109.236 kb on - strand, within CA264_00490at 109.238 kb on + strand, within CA264_00490at 109.238 kb on + strand, within CA264_00490at 109.244 kb on - strand, within CA264_00490at 109.266 kb on - strand, within CA264_00490at 109.286 kb on + strand, within CA264_00490at 109.286 kb on + strand, within CA264_00490at 109.286 kb on + strand, within CA264_00490at 109.286 kb on + strand, within CA264_00490at 109.286 kb on + strand, within CA264_00490at 109.287 kb on - strand, within CA264_00490at 109.287 kb on - strand, within CA264_00490at 109.353 kb on + strand, within CA264_00490at 109.441 kb on + strand, within CA264_00490at 109.442 kb on - strand, within CA264_00490at 109.446 kb on - strand, within CA264_00490at 109.446 kb on - strand, within CA264_00490at 109.499 kb on - strandat 109.500 kb on + strandat 109.500 kb on + strandat 109.505 kb on - strandat 109.575 kb on - strandat 109.673 kb on + strandat 109.673 kb on + strandat 109.718 kb on + strandat 109.718 kb on + strandat 109.721 kb on + strandat 109.721 kb on + strandat 109.722 kb on - strandat 109.724 kb on - strandat 109.738 kb on + strandat 109.739 kb on - strandat 109.747 kb on + strandat 109.748 kb on - strandat 109.748 kb on - strandat 109.750 kb on + strandat 109.819 kb on + strandat 109.819 kb on + strandat 109.859 kb on + strandat 109.859 kb on + strandat 109.862 kb on + strandat 109.862 kb on + strandat 109.862 kb on + strandat 109.863 kb on - strandat 109.867 kb on - strandat 109.867 kb on - strandat 109.867 kb on - strandat 109.869 kb on - strandat 109.880 kb on + strandat 109.881 kb on - strandat 109.886 kb on + strandat 109.910 kb on - strandat 109.953 kb on + strandat 109.953 kb on + strandat 109.953 kb on + strandat 110.010 kb on + strandat 110.010 kb on + strandat 110.011 kb on - strandat 110.022 kb on + strandat 110.023 kb on - strandat 110.237 kb on + strand, within CA264_00495at 110.238 kb on - strand, within CA264_00495at 110.298 kb on - strand, within CA264_00495at 110.300 kb on + strand, within CA264_00495at 110.301 kb on - strand, within CA264_00495at 110.336 kb on - strand, within CA264_00495at 110.336 kb on - strand, within CA264_00495at 110.369 kb on + strand, within CA264_00495at 110.369 kb on + strand, within CA264_00495at 110.370 kb on - strand, within CA264_00495at 110.370 kb on - strand, within CA264_00495at 110.373 kb on + strand, within CA264_00495at 110.373 kb on + strand, within CA264_00495at 110.373 kb on + strand, within CA264_00495at 110.374 kb on - strand, within CA264_00495at 110.485 kb on + strand, within CA264_00495at 110.491 kb on - strand, within CA264_00495at 110.519 kb on - strand, within CA264_00495at 110.529 kb on + strand, within CA264_00495at 110.573 kb on + strand, within CA264_00495at 110.573 kb on + strand, within CA264_00495at 110.593 kb on - strand, within CA264_00495at 110.647 kb on + strand, within CA264_00495at 110.648 kb on - strand, within CA264_00495at 110.649 kb on + strand, within CA264_00495at 110.732 kb on + strand, within CA264_00495

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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106,346 + CA264_00485 0.16 -0.0
106,346 + CA264_00485 0.16 +0.6
106,347 - CA264_00485 0.16 +1.0
106,347 - CA264_00485 0.16 -1.6
106,348 + CA264_00485 0.16 +0.1
106,348 + CA264_00485 0.16 -0.0
106,348 + CA264_00485 0.16 +3.7
106,349 - CA264_00485 0.16 +0.3
106,349 - CA264_00485 0.16 +0.6
106,353 + CA264_00485 0.17 -0.3
106,353 + CA264_00485 0.17 +0.3
106,354 - CA264_00485 0.17 +0.7
106,354 - CA264_00485 0.17 +1.3
106,354 - CA264_00485 0.17 +0.1
106,354 - CA264_00485 0.17 +0.4
106,404 + CA264_00485 0.21 -0.2
106,405 - CA264_00485 0.21 +0.6
106,449 + CA264_00485 0.25 +1.4
106,460 + CA264_00485 0.26 +0.6
106,502 + CA264_00485 0.29 +0.0
106,503 - CA264_00485 0.29 +0.2
106,607 - CA264_00485 0.38 -0.8
106,697 - CA264_00485 0.46 -0.3
106,701 - CA264_00485 0.46 +0.6
106,742 + CA264_00485 0.49 +0.6
106,788 + CA264_00485 0.53 -0.1
106,788 + CA264_00485 0.53 +0.6
106,788 + CA264_00485 0.53 -0.3
106,868 + CA264_00485 0.60 +1.3
106,869 - CA264_00485 0.60 +0.6
106,869 - CA264_00485 0.60 +0.5
106,869 - CA264_00485 0.60 +0.7
106,881 - CA264_00485 0.61 +0.0
106,886 + CA264_00485 0.62 +0.1
106,887 - CA264_00485 0.62 +0.4
106,919 + CA264_00485 0.64 -0.2
106,919 + CA264_00485 0.64 -0.9
106,920 - CA264_00485 0.64 +0.4
106,920 - CA264_00485 0.64 +0.9
106,922 - CA264_00485 0.65 +0.7
106,936 + CA264_00485 0.66 -0.0
106,954 - CA264_00485 0.67 +1.1
106,954 - CA264_00485 0.67 +0.2
106,957 - CA264_00485 0.68 +0.4
106,957 - CA264_00485 0.68 -0.8
106,957 - CA264_00485 0.68 +0.1
107,026 - CA264_00485 0.73 +0.7
107,047 - CA264_00485 0.75 +1.0
107,050 - CA264_00485 0.75 -1.9
107,070 + CA264_00485 0.77 -0.3
107,071 - CA264_00485 0.77 +0.2
107,073 + CA264_00485 0.77 -0.5
107,074 - CA264_00485 0.77 +0.3
107,074 - CA264_00485 0.77 -0.3
107,076 - CA264_00485 0.78 +0.1
107,076 - CA264_00485 0.78 +0.0
107,209 - CA264_00485 0.89 +0.6
107,250 - +0.3
107,250 - +0.6
107,341 + +0.3
107,342 - -0.6
107,346 + +1.3
107,347 - +0.6
107,400 + +1.7
107,401 - +0.6
107,403 + -0.3
107,403 + -0.1
107,424 + +0.2
107,437 - +1.3
107,457 + +0.4
107,639 + CA264_00490 0.12 +0.5
107,639 + CA264_00490 0.12 -1.0
107,645 + CA264_00490 0.13 +0.1
107,652 + CA264_00490 0.13 +0.5
107,693 + CA264_00490 0.15 +0.9
107,748 + CA264_00490 0.17 -0.1
107,749 - CA264_00490 0.17 -0.3
107,754 + CA264_00490 0.17 +1.9
107,759 - CA264_00490 0.17 +0.3
107,759 - CA264_00490 0.17 +1.2
107,968 + CA264_00490 0.26 -0.1
107,968 + CA264_00490 0.26 -0.3
108,006 - CA264_00490 0.28 +0.7
108,022 + CA264_00490 0.28 +0.5
108,022 + CA264_00490 0.28 +0.7
108,124 - CA264_00490 0.33 -0.3
108,207 + CA264_00490 0.36 +0.9
108,220 - CA264_00490 0.37 +0.9
108,220 - CA264_00490 0.37 +1.0
108,235 + CA264_00490 0.37 +0.0
108,240 - CA264_00490 0.37 -0.3
108,240 - CA264_00490 0.37 -0.6
108,244 + CA264_00490 0.38 -0.1
108,314 + CA264_00490 0.40 +0.1
108,314 + CA264_00490 0.40 -0.1
108,320 - CA264_00490 0.41 +1.0
108,348 + CA264_00490 0.42 +0.5
108,369 + CA264_00490 0.43 +0.2
108,419 - CA264_00490 0.45 +1.2
108,518 + CA264_00490 0.49 +0.4
108,717 + CA264_00490 0.57 +0.2
108,793 + CA264_00490 0.60 +0.1
108,820 - CA264_00490 0.62 +0.5
108,837 + CA264_00490 0.62 +1.1
108,838 - CA264_00490 0.62 +0.4
108,946 - CA264_00490 0.67 +1.0
109,011 + CA264_00490 0.70 -0.3
109,043 - CA264_00490 0.71 -0.0
109,179 + CA264_00490 0.77 +0.3
109,179 + CA264_00490 0.77 +1.3
109,179 + CA264_00490 0.77 +0.1
109,180 - CA264_00490 0.77 +0.3
109,236 - CA264_00490 0.79 +2.0
109,238 + CA264_00490 0.79 +1.0
109,238 + CA264_00490 0.79 +0.4
109,244 - CA264_00490 0.79 -0.0
109,266 - CA264_00490 0.80 +0.3
109,286 + CA264_00490 0.81 +1.2
109,286 + CA264_00490 0.81 +0.5
109,286 + CA264_00490 0.81 +0.2
109,286 + CA264_00490 0.81 +0.2
109,286 + CA264_00490 0.81 +1.3
109,287 - CA264_00490 0.81 +0.9
109,287 - CA264_00490 0.81 -0.4
109,353 + CA264_00490 0.84 -0.2
109,441 + CA264_00490 0.88 -0.3
109,442 - CA264_00490 0.88 +0.5
109,446 - CA264_00490 0.88 +0.2
109,446 - CA264_00490 0.88 -1.2
109,499 - -0.9
109,500 + +1.2
109,500 + +0.4
109,505 - -1.6
109,575 - +0.4
109,673 + +0.5
109,673 + +0.1
109,718 + +0.6
109,718 + +0.1
109,721 + +1.1
109,721 + -0.5
109,722 - -0.7
109,724 - +1.6
109,738 + -0.2
109,739 - +1.3
109,747 + +0.5
109,748 - +2.0
109,748 - +1.3
109,750 + +0.3
109,819 + +0.4
109,819 + +1.1
109,859 + +0.2
109,859 + -2.4
109,862 + -0.3
109,862 + +0.4
109,862 + +0.4
109,863 - +0.5
109,867 - -0.3
109,867 - +1.1
109,867 - +0.4
109,869 - +0.2
109,880 + -0.4
109,881 - -0.1
109,886 + -0.4
109,910 - +0.5
109,953 + -0.5
109,953 + -0.3
109,953 + -1.2
110,010 + -0.4
110,010 + -0.4
110,011 - +0.3
110,022 + +0.0
110,023 - -0.9
110,237 + CA264_00495 0.18 -0.5
110,238 - CA264_00495 0.18 +1.3
110,298 - CA264_00495 0.23 -0.5
110,300 + CA264_00495 0.23 -0.9
110,301 - CA264_00495 0.23 -1.8
110,336 - CA264_00495 0.26 -0.4
110,336 - CA264_00495 0.26 -1.0
110,369 + CA264_00495 0.29 +0.0
110,369 + CA264_00495 0.29 +0.4
110,370 - CA264_00495 0.29 -0.9
110,370 - CA264_00495 0.29 -1.6
110,373 + CA264_00495 0.29 +0.2
110,373 + CA264_00495 0.29 -0.7
110,373 + CA264_00495 0.29 +0.8
110,374 - CA264_00495 0.29 -0.4
110,485 + CA264_00495 0.38 -0.0
110,491 - CA264_00495 0.39 -0.5
110,519 - CA264_00495 0.41 -1.4
110,529 + CA264_00495 0.42 -1.0
110,573 + CA264_00495 0.46 -0.5
110,573 + CA264_00495 0.46 -0.3
110,593 - CA264_00495 0.47 -0.5
110,647 + CA264_00495 0.52 -0.3
110,648 - CA264_00495 0.52 +0.2
110,649 + CA264_00495 0.52 -0.8
110,732 + CA264_00495 0.59 +0.4

Or see this region's nucleotide sequence