Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00155

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00145 and CA264_00150 are separated by 107 nucleotidesCA264_00150 and CA264_00155 overlap by 59 nucleotidesCA264_00155 and CA264_00160 are separated by 130 nucleotides CA264_00145: CA264_00145 - DNA mismatch repair protein MutT, at 37,074 to 37,637 _00145 CA264_00150: CA264_00150 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 37,745 to 38,551 _00150 CA264_00155: CA264_00155 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 38,493 to 38,780 _00155 CA264_00160: CA264_00160 - hypothetical protein, at 38,911 to 41,952 _00160 Position (kb) 38 39Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 37.569 kb on - strand, within CA264_00145at 37.636 kb on - strandat 37.636 kb on - strandat 37.673 kb on + strandat 37.673 kb on + strandat 37.673 kb on + strandat 37.675 kb on + strandat 37.713 kb on + strandat 37.714 kb on - strandat 37.760 kb on + strandat 37.779 kb on - strandat 37.779 kb on - strandat 37.821 kb on + strandat 37.868 kb on - strand, within CA264_00150at 37.871 kb on + strand, within CA264_00150at 37.884 kb on + strand, within CA264_00150at 37.999 kb on + strand, within CA264_00150at 38.000 kb on + strand, within CA264_00150at 38.000 kb on + strand, within CA264_00150at 38.042 kb on - strand, within CA264_00150at 38.045 kb on - strand, within CA264_00150at 38.096 kb on + strand, within CA264_00150at 38.119 kb on - strand, within CA264_00150at 38.119 kb on - strand, within CA264_00150at 38.158 kb on - strand, within CA264_00150at 38.315 kb on + strand, within CA264_00150at 38.358 kb on + strand, within CA264_00150at 38.375 kb on - strand, within CA264_00150at 38.482 kb on + strandat 38.486 kb on - strandat 38.486 kb on - strandat 38.795 kb on + strandat 38.809 kb on + strandat 38.883 kb on + strandat 39.008 kb on + strandat 39.008 kb on + strandat 39.008 kb on + strandat 39.009 kb on - strandat 39.010 kb on + strandat 39.010 kb on + strandat 39.117 kb on + strandat 39.155 kb on - strandat 39.176 kb on + strandat 39.313 kb on - strand, within CA264_00160at 39.323 kb on + strand, within CA264_00160at 39.368 kb on + strand, within CA264_00160at 39.369 kb on - strand, within CA264_00160at 39.372 kb on + strand, within CA264_00160at 39.372 kb on + strand, within CA264_00160at 39.372 kb on + strand, within CA264_00160at 39.373 kb on - strand, within CA264_00160at 39.373 kb on - strand, within CA264_00160at 39.374 kb on + strand, within CA264_00160at 39.375 kb on - strand, within CA264_00160at 39.394 kb on - strand, within CA264_00160at 39.397 kb on + strand, within CA264_00160at 39.397 kb on + strand, within CA264_00160at 39.397 kb on + strand, within CA264_00160at 39.424 kb on - strand, within CA264_00160at 39.488 kb on - strand, within CA264_00160at 39.538 kb on + strand, within CA264_00160at 39.539 kb on - strand, within CA264_00160at 39.602 kb on + strand, within CA264_00160at 39.602 kb on + strand, within CA264_00160at 39.602 kb on + strand, within CA264_00160at 39.603 kb on - strand, within CA264_00160at 39.624 kb on + strand, within CA264_00160at 39.624 kb on + strand, within CA264_00160at 39.633 kb on + strand, within CA264_00160at 39.675 kb on + strand, within CA264_00160at 39.676 kb on - strand, within CA264_00160at 39.688 kb on + strand, within CA264_00160at 39.713 kb on - strand, within CA264_00160at 39.748 kb on - strand, within CA264_00160at 39.751 kb on + strand, within CA264_00160at 39.752 kb on - strand, within CA264_00160at 39.752 kb on - strand, within CA264_00160at 39.753 kb on + strand, within CA264_00160at 39.763 kb on + strand, within CA264_00160at 39.768 kb on + strand, within CA264_00160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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37,569 - CA264_00145 0.88 +1.1
37,636 - -0.6
37,636 - -0.3
37,673 + -0.6
37,673 + -0.4
37,673 + +1.1
37,675 + -0.4
37,713 + +0.5
37,714 - -0.4
37,760 + -0.1
37,779 - +0.4
37,779 - +0.4
37,821 + -0.2
37,868 - CA264_00150 0.15 +0.5
37,871 + CA264_00150 0.16 -0.4
37,884 + CA264_00150 0.17 -0.3
37,999 + CA264_00150 0.31 +0.3
38,000 + CA264_00150 0.32 +0.2
38,000 + CA264_00150 0.32 +0.2
38,042 - CA264_00150 0.37 -0.4
38,045 - CA264_00150 0.37 +0.6
38,096 + CA264_00150 0.43 -0.1
38,119 - CA264_00150 0.46 +0.3
38,119 - CA264_00150 0.46 -0.2
38,158 - CA264_00150 0.51 +0.2
38,315 + CA264_00150 0.71 +0.4
38,358 + CA264_00150 0.76 -0.3
38,375 - CA264_00150 0.78 -0.1
38,482 + -0.6
38,486 - +1.3
38,486 - -0.0
38,795 + -0.6
38,809 + +0.5
38,883 + -0.6
39,008 + -1.1
39,008 + +0.1
39,008 + +0.1
39,009 - -1.0
39,010 + -0.4
39,010 + -0.4
39,117 + +0.2
39,155 - -1.1
39,176 + -1.4
39,313 - CA264_00160 0.13 -1.6
39,323 + CA264_00160 0.14 -1.6
39,368 + CA264_00160 0.15 -1.3
39,369 - CA264_00160 0.15 -1.9
39,372 + CA264_00160 0.15 -0.9
39,372 + CA264_00160 0.15 -1.1
39,372 + CA264_00160 0.15 -1.7
39,373 - CA264_00160 0.15 -0.5
39,373 - CA264_00160 0.15 -0.9
39,374 + CA264_00160 0.15 -1.9
39,375 - CA264_00160 0.15 -1.7
39,394 - CA264_00160 0.16 -2.1
39,397 + CA264_00160 0.16 -1.9
39,397 + CA264_00160 0.16 -0.5
39,397 + CA264_00160 0.16 +0.9
39,424 - CA264_00160 0.17 -1.1
39,488 - CA264_00160 0.19 -3.7
39,538 + CA264_00160 0.21 -0.8
39,539 - CA264_00160 0.21 +0.3
39,602 + CA264_00160 0.23 -4.1
39,602 + CA264_00160 0.23 -2.5
39,602 + CA264_00160 0.23 -1.4
39,603 - CA264_00160 0.23 -2.2
39,624 + CA264_00160 0.23 -0.8
39,624 + CA264_00160 0.23 -1.2
39,633 + CA264_00160 0.24 +1.5
39,675 + CA264_00160 0.25 -1.5
39,676 - CA264_00160 0.25 -0.1
39,688 + CA264_00160 0.26 -2.0
39,713 - CA264_00160 0.26 -1.2
39,748 - CA264_00160 0.28 -1.2
39,751 + CA264_00160 0.28 -0.9
39,752 - CA264_00160 0.28 -0.7
39,752 - CA264_00160 0.28 -2.4
39,753 + CA264_00160 0.28 +0.5
39,763 + CA264_00160 0.28 -1.5
39,768 + CA264_00160 0.28 -1.2

Or see this region's nucleotide sequence