Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28990 and ABIE40_RS28995 overlap by 2 nucleotides ABIE40_RS28995 and ABIE40_RS29000 are separated by 238 nucleotides ABIE40_RS29000 and ABIE40_RS29005 are separated by 97 nucleotides
ABIE40_RS28990: ABIE40_RS28990 - arsenical resistance protein ArsH, at 496,554 to 497,303
_RS28990
ABIE40_RS28995: ABIE40_RS28995 - epoxide hydrolase N-terminal domain-containing protein, at 497,302 to 497,403
_RS28995
ABIE40_RS29000: ABIE40_RS29000 - cold-shock protein, at 497,642 to 497,851
_RS29000
ABIE40_RS29005: ABIE40_RS29005 - hypothetical protein, at 497,949 to 498,119
_RS29005
Position (kb) 497
498
499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 497.132 kb on + strand, within ABIE40_RS28990 at 497.133 kb on - strand, within ABIE40_RS28990 at 497.133 kb on - strand, within ABIE40_RS28990 at 497.134 kb on + strand, within ABIE40_RS28990 at 497.134 kb on + strand, within ABIE40_RS28990 at 497.134 kb on + strand, within ABIE40_RS28990 at 497.134 kb on + strand, within ABIE40_RS28990 at 497.134 kb on + strand, within ABIE40_RS28990 at 497.135 kb on - strand, within ABIE40_RS28990 at 497.135 kb on - strand, within ABIE40_RS28990 at 497.135 kb on - strand, within ABIE40_RS28990 at 497.158 kb on + strand, within ABIE40_RS28990 at 497.158 kb on + strand, within ABIE40_RS28990 at 497.199 kb on - strand, within ABIE40_RS28990 at 497.199 kb on - strand, within ABIE40_RS28990 at 497.199 kb on - strand, within ABIE40_RS28990 at 497.210 kb on + strand, within ABIE40_RS28990 at 497.210 kb on + strand, within ABIE40_RS28990 at 497.210 kb on + strand, within ABIE40_RS28990 at 497.210 kb on + strand, within ABIE40_RS28990 at 497.211 kb on - strand, within ABIE40_RS28990 at 497.211 kb on - strand, within ABIE40_RS28990 at 497.211 kb on - strand, within ABIE40_RS28990 at 497.223 kb on + strand, within ABIE40_RS28990 at 497.234 kb on + strand at 497.234 kb on + strand at 497.234 kb on + strand at 497.234 kb on + strand at 497.314 kb on - strand, within ABIE40_RS28995 at 497.401 kb on + strand at 497.401 kb on + strand at 497.401 kb on + strand at 497.401 kb on + strand at 497.401 kb on + strand at 497.401 kb on + strand at 497.402 kb on - strand at 497.402 kb on - strand at 497.446 kb on - strand at 497.485 kb on - strand at 497.498 kb on + strand at 497.499 kb on - strand at 497.500 kb on + strand at 497.500 kb on + strand at 497.500 kb on + strand at 497.500 kb on + strand at 497.540 kb on + strand at 497.615 kb on - strand at 497.635 kb on - strand at 497.647 kb on + strand at 497.648 kb on - strand at 497.658 kb on + strand at 497.762 kb on + strand, within ABIE40_RS29000 at 497.762 kb on + strand, within ABIE40_RS29000 at 497.763 kb on - strand, within ABIE40_RS29000 at 497.763 kb on - strand, within ABIE40_RS29000 at 497.763 kb on - strand, within ABIE40_RS29000 at 497.763 kb on - strand, within ABIE40_RS29000 at 497.789 kb on + strand, within ABIE40_RS29000 at 497.789 kb on + strand, within ABIE40_RS29000 at 497.790 kb on - strand, within ABIE40_RS29000 at 497.790 kb on - strand, within ABIE40_RS29000 at 497.879 kb on + strand at 497.879 kb on + strand at 497.879 kb on + strand at 497.879 kb on + strand at 497.880 kb on - strand at 497.880 kb on - strand at 497.880 kb on - strand at 497.880 kb on - strand at 497.880 kb on - strand at 497.880 kb on - strand at 497.880 kb on - strand at 498.051 kb on + strand, within ABIE40_RS29005 at 498.089 kb on + strand, within ABIE40_RS29005 at 498.293 kb on + strand at 498.297 kb on + strand at 498.298 kb on - strand at 498.298 kb on - strand at 498.314 kb on + strand at 498.350 kb on + strand at 498.350 kb on + strand at 498.350 kb on + strand at 498.351 kb on - strand at 498.382 kb on + strand at 498.401 kb on - strand at 498.438 kb on + strand at 498.438 kb on + strand at 498.438 kb on + strand at 498.439 kb on - strand at 498.460 kb on + strand at 498.460 kb on + strand at 498.490 kb on + strand at 498.550 kb on - strand at 498.606 kb on - strand at 498.636 kb on + strand at 498.637 kb on - strand at 498.643 kb on - strand at 498.671 kb on - strand at 498.704 kb on - strand at 498.760 kb on - strand at 499.027 kb on + strand at 499.027 kb on + strand at 499.028 kb on - strand at 499.028 kb on - strand at 499.028 kb on - strand at 499.028 kb on - strand at 499.062 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 497,132 + ABIE40_RS28990 0.77 -0.8 497,133 - ABIE40_RS28990 0.77 -1.4 497,133 - ABIE40_RS28990 0.77 -0.0 497,134 + ABIE40_RS28990 0.77 -1.5 497,134 + ABIE40_RS28990 0.77 +0.4 497,134 + ABIE40_RS28990 0.77 +0.2 497,134 + ABIE40_RS28990 0.77 -0.0 497,134 + ABIE40_RS28990 0.77 -0.5 497,135 - ABIE40_RS28990 0.77 +0.1 497,135 - ABIE40_RS28990 0.77 -1.0 497,135 - ABIE40_RS28990 0.77 -0.0 497,158 + ABIE40_RS28990 0.81 +0.0 497,158 + ABIE40_RS28990 0.81 -1.1 497,199 - ABIE40_RS28990 0.86 -2.8 497,199 - ABIE40_RS28990 0.86 -0.1 497,199 - ABIE40_RS28990 0.86 -3.1 497,210 + ABIE40_RS28990 0.87 +0.3 497,210 + ABIE40_RS28990 0.87 +0.1 497,210 + ABIE40_RS28990 0.87 +2.4 497,210 + ABIE40_RS28990 0.87 +0.0 497,211 - ABIE40_RS28990 0.88 -2.5 497,211 - ABIE40_RS28990 0.88 +0.7 497,211 - ABIE40_RS28990 0.88 -1.5 497,223 + ABIE40_RS28990 0.89 -0.3 497,234 + +1.2 497,234 + -0.3 497,234 + +1.0 497,234 + -0.6 497,314 - ABIE40_RS28995 0.12 +1.0 497,401 + -0.6 497,401 + -1.2 497,401 + -0.6 497,401 + -0.0 497,401 + -1.4 497,401 + +0.4 497,402 - +0.1 497,402 - -0.1 497,446 - -2.7 497,485 - +0.7 497,498 + +0.5 497,499 - -0.6 497,500 + +0.5 497,500 + -0.4 497,500 + -1.9 497,500 + -1.4 497,540 + -0.2 497,615 - -1.0 497,635 - -0.4 497,647 + +0.7 497,648 - +0.4 497,658 + -1.7 497,762 + ABIE40_RS29000 0.57 -0.8 497,762 + ABIE40_RS29000 0.57 +0.3 497,763 - ABIE40_RS29000 0.58 -0.7 497,763 - ABIE40_RS29000 0.58 +0.5 497,763 - ABIE40_RS29000 0.58 -1.0 497,763 - ABIE40_RS29000 0.58 -0.7 497,789 + ABIE40_RS29000 0.70 -1.8 497,789 + ABIE40_RS29000 0.70 -0.4 497,790 - ABIE40_RS29000 0.70 -1.6 497,790 - ABIE40_RS29000 0.70 -1.4 497,879 + -0.7 497,879 + +1.2 497,879 + +0.4 497,879 + -1.2 497,880 - -0.1 497,880 - +1.1 497,880 - -0.4 497,880 - -1.5 497,880 - +0.2 497,880 - +1.0 497,880 - +0.1 498,051 + ABIE40_RS29005 0.60 -0.6 498,089 + ABIE40_RS29005 0.82 -0.2 498,293 + -0.4 498,297 + +0.2 498,298 - +0.9 498,298 - -0.0 498,314 + -0.1 498,350 + +0.6 498,350 + -1.8 498,350 + +0.7 498,351 - -1.0 498,382 + +0.1 498,401 - -2.8 498,438 + -1.6 498,438 + +0.1 498,438 + -0.1 498,439 - -0.3 498,460 + +0.4 498,460 + +1.7 498,490 + +1.0 498,550 - +0.5 498,606 - +0.7 498,636 + +0.7 498,637 - -0.5 498,643 - -1.2 498,671 - -0.2 498,704 - -1.3 498,760 - +0.3 499,027 + -0.4 499,027 + -1.9 499,028 - -0.0 499,028 - -0.1 499,028 - +1.2 499,028 - -0.6 499,062 - -0.7
Or see this region's nucleotide sequence