Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25290

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS25280 and ABIE40_RS25285 are separated by 24 nucleotidesABIE40_RS25285 and ABIE40_RS25290 are separated by 7 nucleotidesABIE40_RS25290 and ABIE40_RS25295 overlap by 4 nucleotidesABIE40_RS25295 and ABIE40_RS25300 are separated by 29 nucleotides ABIE40_RS25280: ABIE40_RS25280 - GGDEF domain-containing phosphodiesterase, at 1,231,122 to 1,232,924 _RS25280 ABIE40_RS25285: ABIE40_RS25285 - cupin domain-containing protein, at 1,232,949 to 1,233,278 _RS25285 ABIE40_RS25290: ABIE40_RS25290 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 1,233,286 to 1,234,041 _RS25290 ABIE40_RS25295: ABIE40_RS25295 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 1,234,038 to 1,234,880 _RS25295 ABIE40_RS25300: ABIE40_RS25300 - ATP-binding cassette domain-containing protein, at 1,234,910 to 1,235,647 _RS25300 Position (kb) 1233 1234 1235Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1232.295 kb on - strand, within ABIE40_RS25280at 1232.479 kb on + strand, within ABIE40_RS25280at 1232.479 kb on + strand, within ABIE40_RS25280at 1232.479 kb on + strand, within ABIE40_RS25280at 1232.479 kb on + strand, within ABIE40_RS25280at 1232.479 kb on + strand, within ABIE40_RS25280at 1232.479 kb on + strand, within ABIE40_RS25280at 1232.479 kb on + strand, within ABIE40_RS25280at 1232.479 kb on + strand, within ABIE40_RS25280at 1232.479 kb on + strand, within ABIE40_RS25280at 1232.479 kb on + strand, within ABIE40_RS25280at 1232.480 kb on - strand, within ABIE40_RS25280at 1232.480 kb on - strand, within ABIE40_RS25280at 1232.480 kb on - strand, within ABIE40_RS25280at 1232.480 kb on - strand, within ABIE40_RS25280at 1232.480 kb on - strand, within ABIE40_RS25280at 1232.480 kb on - strand, within ABIE40_RS25280at 1232.480 kb on - strand, within ABIE40_RS25280at 1232.480 kb on - strand, within ABIE40_RS25280at 1232.505 kb on + strand, within ABIE40_RS25280at 1232.506 kb on - strand, within ABIE40_RS25280at 1232.598 kb on + strand, within ABIE40_RS25280at 1232.598 kb on + strand, within ABIE40_RS25280at 1232.598 kb on + strand, within ABIE40_RS25280at 1232.599 kb on - strand, within ABIE40_RS25280at 1232.599 kb on - strand, within ABIE40_RS25280at 1232.621 kb on + strand, within ABIE40_RS25280at 1232.655 kb on + strand, within ABIE40_RS25280at 1232.951 kb on - strandat 1232.951 kb on - strandat 1232.952 kb on + strandat 1232.952 kb on + strandat 1232.952 kb on + strandat 1232.952 kb on + strandat 1232.952 kb on + strandat 1232.952 kb on + strandat 1232.952 kb on + strandat 1232.953 kb on - strandat 1232.953 kb on - strandat 1232.953 kb on - strandat 1232.953 kb on - strandat 1232.953 kb on - strandat 1233.112 kb on + strand, within ABIE40_RS25285at 1233.112 kb on + strand, within ABIE40_RS25285at 1233.113 kb on - strand, within ABIE40_RS25285at 1233.113 kb on - strand, within ABIE40_RS25285at 1233.113 kb on - strand, within ABIE40_RS25285at 1233.113 kb on - strand, within ABIE40_RS25285at 1233.113 kb on - strand, within ABIE40_RS25285at 1233.113 kb on - strand, within ABIE40_RS25285at 1233.125 kb on + strand, within ABIE40_RS25285at 1233.126 kb on - strand, within ABIE40_RS25285at 1233.335 kb on + strandat 1233.335 kb on + strandat 1233.336 kb on - strandat 1233.336 kb on - strandat 1233.336 kb on - strandat 1233.336 kb on - strandat 1233.378 kb on + strand, within ABIE40_RS25290at 1233.378 kb on + strand, within ABIE40_RS25290at 1233.378 kb on + strand, within ABIE40_RS25290at 1233.378 kb on + strand, within ABIE40_RS25290at 1233.378 kb on + strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.379 kb on - strand, within ABIE40_RS25290at 1233.463 kb on - strand, within ABIE40_RS25290at 1233.480 kb on - strand, within ABIE40_RS25290at 1233.576 kb on - strand, within ABIE40_RS25290at 1233.842 kb on - strand, within ABIE40_RS25290at 1234.256 kb on - strand, within ABIE40_RS25295at 1234.256 kb on - strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.261 kb on + strand, within ABIE40_RS25295at 1234.262 kb on - strand, within ABIE40_RS25295at 1234.262 kb on - strand, within ABIE40_RS25295at 1234.378 kb on + strand, within ABIE40_RS25295at 1234.378 kb on + strand, within ABIE40_RS25295at 1234.378 kb on + strand, within ABIE40_RS25295at 1234.379 kb on - strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.495 kb on + strand, within ABIE40_RS25295at 1234.496 kb on - strand, within ABIE40_RS25295at 1234.496 kb on - strand, within ABIE40_RS25295at 1234.559 kb on + strand, within ABIE40_RS25295at 1234.560 kb on - strand, within ABIE40_RS25295at 1234.561 kb on + strand, within ABIE40_RS25295at 1234.561 kb on + strand, within ABIE40_RS25295at 1234.561 kb on + strand, within ABIE40_RS25295at 1234.561 kb on + strand, within ABIE40_RS25295at 1234.561 kb on + strand, within ABIE40_RS25295at 1234.562 kb on - strand, within ABIE40_RS25295at 1234.562 kb on - strand, within ABIE40_RS25295at 1234.562 kb on - strand, within ABIE40_RS25295at 1234.589 kb on - strand, within ABIE40_RS25295at 1234.753 kb on + strand, within ABIE40_RS25295at 1234.753 kb on + strand, within ABIE40_RS25295at 1234.754 kb on - strand, within ABIE40_RS25295at 1234.754 kb on - strand, within ABIE40_RS25295at 1234.754 kb on - strand, within ABIE40_RS25295at 1234.754 kb on - strand, within ABIE40_RS25295at 1234.820 kb on + strandat 1234.872 kb on + strandat 1234.872 kb on + strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.873 kb on - strandat 1234.926 kb on + strandat 1234.926 kb on + strandat 1234.927 kb on - strandat 1234.927 kb on - strandat 1234.927 kb on - strandat 1234.930 kb on - strandat 1234.973 kb on + strandat 1234.973 kb on + strandat 1234.974 kb on - strandat 1235.020 kb on - strand, within ABIE40_RS25300at 1235.028 kb on + strand, within ABIE40_RS25300at 1235.028 kb on + strand, within ABIE40_RS25300

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,232,295 - ABIE40_RS25280 0.65 -0.2
1,232,479 + ABIE40_RS25280 0.75 -0.1
1,232,479 + ABIE40_RS25280 0.75 -0.2
1,232,479 + ABIE40_RS25280 0.75 +0.7
1,232,479 + ABIE40_RS25280 0.75 +0.3
1,232,479 + ABIE40_RS25280 0.75 -1.1
1,232,479 + ABIE40_RS25280 0.75 +0.6
1,232,479 + ABIE40_RS25280 0.75 -0.4
1,232,479 + ABIE40_RS25280 0.75 -1.9
1,232,479 + ABIE40_RS25280 0.75 +0.5
1,232,479 + ABIE40_RS25280 0.75 +1.1
1,232,480 - ABIE40_RS25280 0.75 +0.7
1,232,480 - ABIE40_RS25280 0.75 -0.2
1,232,480 - ABIE40_RS25280 0.75 -0.4
1,232,480 - ABIE40_RS25280 0.75 -1.9
1,232,480 - ABIE40_RS25280 0.75 +0.4
1,232,480 - ABIE40_RS25280 0.75 +0.7
1,232,480 - ABIE40_RS25280 0.75 +3.6
1,232,480 - ABIE40_RS25280 0.75 +1.0
1,232,505 + ABIE40_RS25280 0.77 -0.2
1,232,506 - ABIE40_RS25280 0.77 +1.5
1,232,598 + ABIE40_RS25280 0.82 -0.2
1,232,598 + ABIE40_RS25280 0.82 +0.4
1,232,598 + ABIE40_RS25280 0.82 -0.8
1,232,599 - ABIE40_RS25280 0.82 +0.4
1,232,599 - ABIE40_RS25280 0.82 +0.1
1,232,621 + ABIE40_RS25280 0.83 +0.8
1,232,655 + ABIE40_RS25280 0.85 +0.2
1,232,951 - +5.3
1,232,951 - +0.4
1,232,952 + -0.6
1,232,952 + -0.8
1,232,952 + -0.1
1,232,952 + -0.4
1,232,952 + -1.6
1,232,952 + +0.4
1,232,952 + -0.6
1,232,953 - +0.3
1,232,953 - -0.6
1,232,953 - -0.1
1,232,953 - -0.1
1,232,953 - +0.6
1,233,112 + ABIE40_RS25285 0.49 -0.3
1,233,112 + ABIE40_RS25285 0.49 +1.0
1,233,113 - ABIE40_RS25285 0.50 +0.9
1,233,113 - ABIE40_RS25285 0.50 +1.6
1,233,113 - ABIE40_RS25285 0.50 -0.6
1,233,113 - ABIE40_RS25285 0.50 -0.3
1,233,113 - ABIE40_RS25285 0.50 +0.3
1,233,113 - ABIE40_RS25285 0.50 +0.3
1,233,125 + ABIE40_RS25285 0.53 -0.3
1,233,126 - ABIE40_RS25285 0.54 -0.5
1,233,335 + +1.7
1,233,335 + -0.9
1,233,336 - -0.3
1,233,336 - +0.3
1,233,336 - +1.6
1,233,336 - +2.9
1,233,378 + ABIE40_RS25290 0.12 -0.0
1,233,378 + ABIE40_RS25290 0.12 +0.8
1,233,378 + ABIE40_RS25290 0.12 +0.3
1,233,378 + ABIE40_RS25290 0.12 -1.6
1,233,378 + ABIE40_RS25290 0.12 +0.3
1,233,379 - ABIE40_RS25290 0.12 -0.2
1,233,379 - ABIE40_RS25290 0.12 -0.4
1,233,379 - ABIE40_RS25290 0.12 -0.9
1,233,379 - ABIE40_RS25290 0.12 -1.6
1,233,379 - ABIE40_RS25290 0.12 +1.4
1,233,379 - ABIE40_RS25290 0.12 -1.4
1,233,379 - ABIE40_RS25290 0.12 +0.8
1,233,463 - ABIE40_RS25290 0.23 +2.0
1,233,480 - ABIE40_RS25290 0.26 +0.6
1,233,576 - ABIE40_RS25290 0.38 -0.2
1,233,842 - ABIE40_RS25290 0.74 +1.4
1,234,256 - ABIE40_RS25295 0.26 +0.8
1,234,256 - ABIE40_RS25295 0.26 -0.1
1,234,261 + ABIE40_RS25295 0.26 -0.2
1,234,261 + ABIE40_RS25295 0.26 +0.2
1,234,261 + ABIE40_RS25295 0.26 +1.0
1,234,261 + ABIE40_RS25295 0.26 +0.8
1,234,261 + ABIE40_RS25295 0.26 +0.2
1,234,261 + ABIE40_RS25295 0.26 -0.2
1,234,261 + ABIE40_RS25295 0.26 +0.7
1,234,261 + ABIE40_RS25295 0.26 -1.9
1,234,261 + ABIE40_RS25295 0.26 +2.4
1,234,261 + ABIE40_RS25295 0.26 +0.2
1,234,261 + ABIE40_RS25295 0.26 -0.2
1,234,262 - ABIE40_RS25295 0.27 +1.0
1,234,262 - ABIE40_RS25295 0.27 +0.7
1,234,378 + ABIE40_RS25295 0.40 -0.9
1,234,378 + ABIE40_RS25295 0.40 -0.4
1,234,378 + ABIE40_RS25295 0.40 +0.0
1,234,379 - ABIE40_RS25295 0.40 +0.5
1,234,495 + ABIE40_RS25295 0.54 +0.8
1,234,495 + ABIE40_RS25295 0.54 -1.1
1,234,495 + ABIE40_RS25295 0.54 +0.6
1,234,495 + ABIE40_RS25295 0.54 +0.8
1,234,495 + ABIE40_RS25295 0.54 +1.2
1,234,495 + ABIE40_RS25295 0.54 -0.2
1,234,495 + ABIE40_RS25295 0.54 +0.4
1,234,495 + ABIE40_RS25295 0.54 -0.2
1,234,496 - ABIE40_RS25295 0.54 -1.1
1,234,496 - ABIE40_RS25295 0.54 -1.8
1,234,559 + ABIE40_RS25295 0.62 +1.2
1,234,560 - ABIE40_RS25295 0.62 +0.3
1,234,561 + ABIE40_RS25295 0.62 -1.9
1,234,561 + ABIE40_RS25295 0.62 +0.8
1,234,561 + ABIE40_RS25295 0.62 +0.1
1,234,561 + ABIE40_RS25295 0.62 -0.3
1,234,561 + ABIE40_RS25295 0.62 +0.5
1,234,562 - ABIE40_RS25295 0.62 -0.4
1,234,562 - ABIE40_RS25295 0.62 -0.2
1,234,562 - ABIE40_RS25295 0.62 -0.6
1,234,589 - ABIE40_RS25295 0.65 -0.3
1,234,753 + ABIE40_RS25295 0.85 +0.3
1,234,753 + ABIE40_RS25295 0.85 -2.0
1,234,754 - ABIE40_RS25295 0.85 -0.8
1,234,754 - ABIE40_RS25295 0.85 +0.4
1,234,754 - ABIE40_RS25295 0.85 -0.6
1,234,754 - ABIE40_RS25295 0.85 -0.9
1,234,820 + -0.2
1,234,872 + -0.5
1,234,872 + +0.1
1,234,873 - -0.6
1,234,873 - -0.4
1,234,873 - +0.7
1,234,873 - +1.7
1,234,873 - -0.7
1,234,873 - -0.5
1,234,873 - -0.4
1,234,873 - -2.5
1,234,873 - -1.0
1,234,873 - -0.4
1,234,873 - -0.7
1,234,926 + +0.7
1,234,926 + +1.3
1,234,927 - -1.3
1,234,927 - -0.7
1,234,927 - -0.4
1,234,930 - -0.2
1,234,973 + +0.3
1,234,973 + -0.0
1,234,974 - -0.2
1,235,020 - ABIE40_RS25300 0.15 +0.4
1,235,028 + ABIE40_RS25300 0.16 -0.1
1,235,028 + ABIE40_RS25300 0.16 +0.0

Or see this region's nucleotide sequence