Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20415 and ABIE40_RS20420 are separated by 135 nucleotides ABIE40_RS20420 and ABIE40_RS20425 are separated by 154 nucleotides ABIE40_RS20425 and ABIE40_RS20430 are separated by 1 nucleotides
ABIE40_RS20415: ABIE40_RS20415 - fatty acid desaturase family protein, at 187,224 to 188,309
_RS20415
ABIE40_RS20420: ABIE40_RS20420 - LacI family DNA-binding transcriptional regulator, at 188,445 to 189,473
_RS20420
ABIE40_RS20425: ABIE40_RS20425 - TIM barrel protein, at 189,628 to 190,440
_RS20425
ABIE40_RS20430: ABIE40_RS20430 - precorrin-4 C(11)-methyltransferase, at 190,442 to 191,200
_RS20430
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.465 kb on + strand, within ABIE40_RS20415 at 187.466 kb on - strand, within ABIE40_RS20415 at 187.466 kb on - strand, within ABIE40_RS20415 at 187.480 kb on + strand, within ABIE40_RS20415 at 187.480 kb on + strand, within ABIE40_RS20415 at 187.481 kb on - strand, within ABIE40_RS20415 at 187.507 kb on + strand, within ABIE40_RS20415 at 187.507 kb on + strand, within ABIE40_RS20415 at 187.508 kb on - strand, within ABIE40_RS20415 at 187.508 kb on - strand, within ABIE40_RS20415 at 187.508 kb on - strand, within ABIE40_RS20415 at 187.647 kb on - strand, within ABIE40_RS20415 at 187.647 kb on - strand, within ABIE40_RS20415 at 187.647 kb on - strand, within ABIE40_RS20415 at 187.647 kb on - strand, within ABIE40_RS20415 at 187.648 kb on + strand, within ABIE40_RS20415 at 187.648 kb on + strand, within ABIE40_RS20415 at 187.649 kb on - strand, within ABIE40_RS20415 at 187.649 kb on - strand, within ABIE40_RS20415 at 187.675 kb on + strand, within ABIE40_RS20415 at 187.675 kb on + strand, within ABIE40_RS20415 at 187.675 kb on + strand, within ABIE40_RS20415 at 187.675 kb on + strand, within ABIE40_RS20415 at 187.676 kb on - strand, within ABIE40_RS20415 at 187.796 kb on - strand, within ABIE40_RS20415 at 187.796 kb on - strand, within ABIE40_RS20415 at 187.967 kb on - strand, within ABIE40_RS20415 at 188.047 kb on + strand, within ABIE40_RS20415 at 188.059 kb on + strand, within ABIE40_RS20415 at 188.060 kb on - strand, within ABIE40_RS20415 at 188.101 kb on + strand, within ABIE40_RS20415 at 188.101 kb on + strand, within ABIE40_RS20415 at 188.102 kb on - strand, within ABIE40_RS20415 at 188.102 kb on - strand, within ABIE40_RS20415 at 188.102 kb on - strand, within ABIE40_RS20415 at 188.102 kb on - strand, within ABIE40_RS20415 at 188.102 kb on - strand, within ABIE40_RS20415 at 188.209 kb on - strand at 188.209 kb on - strand at 188.221 kb on + strand at 188.221 kb on + strand at 188.284 kb on + strand at 188.346 kb on + strand at 188.347 kb on - strand at 188.347 kb on - strand at 188.384 kb on + strand at 188.385 kb on - strand at 188.462 kb on - strand at 188.559 kb on + strand, within ABIE40_RS20420 at 188.676 kb on + strand, within ABIE40_RS20420 at 188.676 kb on + strand, within ABIE40_RS20420 at 188.676 kb on + strand, within ABIE40_RS20420 at 188.676 kb on + strand, within ABIE40_RS20420 at 188.677 kb on - strand, within ABIE40_RS20420 at 188.687 kb on + strand, within ABIE40_RS20420 at 188.937 kb on + strand, within ABIE40_RS20420 at 188.938 kb on - strand, within ABIE40_RS20420 at 188.939 kb on + strand, within ABIE40_RS20420 at 189.012 kb on - strand, within ABIE40_RS20420 at 189.081 kb on + strand, within ABIE40_RS20420 at 189.081 kb on + strand, within ABIE40_RS20420 at 189.081 kb on + strand, within ABIE40_RS20420 at 189.082 kb on - strand, within ABIE40_RS20420 at 189.204 kb on + strand, within ABIE40_RS20420 at 189.204 kb on + strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.205 kb on - strand, within ABIE40_RS20420 at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.453 kb on + strand at 189.454 kb on - strand at 189.454 kb on - strand at 189.454 kb on - strand at 189.454 kb on - strand at 189.454 kb on - strand at 189.454 kb on - strand at 189.454 kb on - strand at 189.454 kb on - strand at 189.456 kb on - strand at 189.467 kb on + strand at 189.467 kb on + strand at 189.468 kb on - strand at 189.472 kb on - strand at 189.519 kb on + strand at 189.520 kb on - strand at 189.702 kb on + strand at 189.895 kb on + strand, within ABIE40_RS20425 at 189.895 kb on + strand, within ABIE40_RS20425 at 190.191 kb on + strand, within ABIE40_RS20425 at 190.192 kb on - strand, within ABIE40_RS20425 at 190.192 kb on - strand, within ABIE40_RS20425 at 190.333 kb on + strand, within ABIE40_RS20425 at 190.333 kb on + strand, within ABIE40_RS20425 at 190.333 kb on + strand, within ABIE40_RS20425 at 190.334 kb on - strand, within ABIE40_RS20425 at 190.420 kb on + strand at 190.420 kb on + strand at 190.421 kb on - strand at 190.421 kb on - strand at 190.421 kb on - strand at 190.421 kb on - strand at 190.443 kb on + strand at 190.444 kb on - strand at 190.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 187,465 + ABIE40_RS20415 0.22 -0.1 187,466 - ABIE40_RS20415 0.22 +1.3 187,466 - ABIE40_RS20415 0.22 -0.5 187,480 + ABIE40_RS20415 0.24 -0.0 187,480 + ABIE40_RS20415 0.24 +0.7 187,481 - ABIE40_RS20415 0.24 -0.7 187,507 + ABIE40_RS20415 0.26 -0.6 187,507 + ABIE40_RS20415 0.26 -0.4 187,508 - ABIE40_RS20415 0.26 -0.7 187,508 - ABIE40_RS20415 0.26 +0.7 187,508 - ABIE40_RS20415 0.26 +0.3 187,647 - ABIE40_RS20415 0.39 -0.1 187,647 - ABIE40_RS20415 0.39 +0.4 187,647 - ABIE40_RS20415 0.39 -1.7 187,647 - ABIE40_RS20415 0.39 -0.1 187,648 + ABIE40_RS20415 0.39 -0.1 187,648 + ABIE40_RS20415 0.39 -0.9 187,649 - ABIE40_RS20415 0.39 +1.0 187,649 - ABIE40_RS20415 0.39 +0.9 187,675 + ABIE40_RS20415 0.42 -1.7 187,675 + ABIE40_RS20415 0.42 +1.0 187,675 + ABIE40_RS20415 0.42 +1.8 187,675 + ABIE40_RS20415 0.42 -0.3 187,676 - ABIE40_RS20415 0.42 -0.6 187,796 - ABIE40_RS20415 0.53 +0.9 187,796 - ABIE40_RS20415 0.53 +0.4 187,967 - ABIE40_RS20415 0.68 -0.7 188,047 + ABIE40_RS20415 0.76 +0.2 188,059 + ABIE40_RS20415 0.77 -1.0 188,060 - ABIE40_RS20415 0.77 -0.0 188,101 + ABIE40_RS20415 0.81 +0.1 188,101 + ABIE40_RS20415 0.81 -2.0 188,102 - ABIE40_RS20415 0.81 -1.0 188,102 - ABIE40_RS20415 0.81 +1.1 188,102 - ABIE40_RS20415 0.81 +0.5 188,102 - ABIE40_RS20415 0.81 +0.2 188,102 - ABIE40_RS20415 0.81 +1.3 188,209 - +0.3 188,209 - -0.7 188,221 + +0.5 188,221 + +0.3 188,284 + -0.9 188,346 + +0.7 188,347 - +0.1 188,347 - -1.0 188,384 + -0.6 188,385 - +0.1 188,462 - +0.1 188,559 + ABIE40_RS20420 0.11 +0.7 188,676 + ABIE40_RS20420 0.22 +0.2 188,676 + ABIE40_RS20420 0.22 -0.7 188,676 + ABIE40_RS20420 0.22 +0.5 188,676 + ABIE40_RS20420 0.22 +0.2 188,677 - ABIE40_RS20420 0.23 +0.3 188,687 + ABIE40_RS20420 0.24 -0.0 188,937 + ABIE40_RS20420 0.48 +0.5 188,938 - ABIE40_RS20420 0.48 +0.8 188,939 + ABIE40_RS20420 0.48 -3.0 189,012 - ABIE40_RS20420 0.55 -0.2 189,081 + ABIE40_RS20420 0.62 +0.9 189,081 + ABIE40_RS20420 0.62 -1.7 189,081 + ABIE40_RS20420 0.62 -0.6 189,082 - ABIE40_RS20420 0.62 -0.3 189,204 + ABIE40_RS20420 0.74 +0.8 189,204 + ABIE40_RS20420 0.74 -0.6 189,205 - ABIE40_RS20420 0.74 +0.2 189,205 - ABIE40_RS20420 0.74 -0.7 189,205 - ABIE40_RS20420 0.74 +1.5 189,205 - ABIE40_RS20420 0.74 +1.0 189,205 - ABIE40_RS20420 0.74 -0.1 189,205 - ABIE40_RS20420 0.74 +1.6 189,205 - ABIE40_RS20420 0.74 +0.0 189,453 + -1.4 189,453 + +1.1 189,453 + -0.1 189,453 + -1.0 189,453 + -1.2 189,453 + -0.6 189,453 + -0.1 189,453 + -0.3 189,454 - +0.6 189,454 - -0.3 189,454 - -1.1 189,454 - -0.5 189,454 - -1.5 189,454 - +2.1 189,454 - -0.6 189,454 - -1.3 189,456 - +0.1 189,467 + +0.8 189,467 + +0.8 189,468 - -0.3 189,472 - +0.6 189,519 + -1.3 189,520 - +0.4 189,702 + +0.0 189,895 + ABIE40_RS20425 0.33 -1.2 189,895 + ABIE40_RS20425 0.33 +1.1 190,191 + ABIE40_RS20425 0.69 +0.3 190,192 - ABIE40_RS20425 0.69 +0.5 190,192 - ABIE40_RS20425 0.69 -2.1 190,333 + ABIE40_RS20425 0.87 -0.2 190,333 + ABIE40_RS20425 0.87 -0.5 190,333 + ABIE40_RS20425 0.87 -0.5 190,334 - ABIE40_RS20425 0.87 +1.3 190,420 + +0.1 190,420 + -0.3 190,421 - +0.0 190,421 - +0.3 190,421 - +0.4 190,421 - -0.1 190,443 + +0.2 190,444 - +0.4 190,470 + -1.5
Or see this region's nucleotide sequence